Table 5 Name glossary for overlapping candidate sRNA genes
Name by Argaman et al. |
Name by Rivas et al. |
Name by Chen et al. |
Name by Tjaden et al. |
Name by Carter et al. |
Comments |
|
tpe90 |
|
|
HB_290/HB_291 |
|
psrA1 |
tk7 |
IS004 |
|
|
|
|
|
IS008 |
|
HB_29 |
|
|
|
|
C0086 |
HB_33 |
|
|
tpe43 |
IS011 |
|
|
|
psrA2 |
|
IS012 |
|
|
|
|
|
|
C0120 |
HB_303/HB_304 |
|
|
|
IS018 |
|
HB_41 |
|
|
|
IS019 |
C0129 |
|
|
|
|
|
C0132 |
HB_46 |
|
|
|
|
C0142 |
HB_310 |
|
|
|
IS031 |
C0182 |
|
|
|
|
IS035 |
|
HB_66/HB_67 |
|
|
|
|
C0194 |
HB_68 |
|
|
|
|
C0197 |
HB_69 |
|
|
tpe1 |
|
C0230 |
|
|
|
|
IS043 |
C0258 |
|
|
|
|
|
C0267 |
HB_324 |
|
|
|
IS050 |
C0292 |
|
|
|
|
|
C0313 |
HB_82/HB_83 |
|
|
|
|
C0337 |
HB_353 |
|
|
|
|
C0352 |
HB_356 |
|
|
te3 |
IS070 |
|
|
Overlaps a 5’ UTR |
|
|
IS077 |
C0386 |
|
|
|
te16 |
|
|
HB_363 |
Resides within an operon |
|
pk2 |
|
C0421 |
|
|
|
|
|
C0424 |
HB_108 |
|
psrA6 |
|
|
C0430 |
|
|
psrA7 |
|
IS087 |
|
|
|
|
tp29 |
IS089 |
|
|
|
|
|
IS094 |
|
HB_115 |
|
|
|
|
C0487 |
HB_374 |
|
|
|
|
C0496 |
HB_376/HB_377/HB_378 |
|
|
tp11 |
IS105 |
|
HB_125 |
|
|
tpe60 |
|
|
HB_126/HB_127/HB_128 |
|
|
t49 |
|
|
HB_384 |
|
|
k3 |
|
C0510 |
|
Experimentally tested |
|
|
|
C0513 |
HB_389/HB_390 |
|
|
p26 |
|
C0536 |
HB_135 |
|
|
k30 |
IS115 |
C0543 |
|
|
|
|
IS117 |
|
HB_409 |
|
|
|
IS125 |
C0593 |
HB_413 |
|
|
|
IS129 |
|
HB_418 |
|
|
|
|
C0634 |
HB_150 |
|
|
t55 |
IS133 |
|
|
|
|
t55 |
|
C0635 |
|
|
|
|
|
C0643 |
HB_151/HB_152 |
|
|
|
IS141 |
|
HB_433/HB_434/HB_435 |
|
|
t77 |
|
|
HB_443 |
|
|
|
|
C0687 |
HB_174 |
|
|
tpe85 |
|
C0696 |
HB_446/HB_447 |
|
|
|
IS149 |
|
HB_448 |
Overlaps a 5' UTR |
|
|
IS154 |
|
HB_455 |
|
|
|
|
C0736 |
HB_459 |
|
|
|
|
C0738 |
HB_181 |
|
|
|
|
C0740 |
HB_463/HB_464/HB_465 |
|
|
|
IS162 |
C0747 |
|
|
|
k23 |
|
|
HB_466 |
|
|
tpke31 |
IS170 |
|
|
|
|
t21 |
|
C0807 |
|
Experimentally tested |
psrA17 |
tpk9 |
|
|
|
|
|
tp48 |
IS173 |
|
|
Overlaps a 5' UTR |
|
tp37 |
|
|
HB_478 |
|
|
|
IS175 |
C0832 |
|
|
|
|
|
C0835 |
HB_188/HB_189 |
|
|
tpe86 |
|
C0840 |
|
|
|
|
IS182 |
C0857 |
HB_483 |
|
|
|
|
C0861 |
HB_195 |
|
|
|
|
C0868 |
HB_486/HB_487 |
|
|
|
|
C0871 |
HB_198 |
|
|
tpke122 |
|
|
HB_495 |
Experimentally tested |
|
|
|
C0877 |
HB_496 |
|
|
|
|
C0881 |
HB_497 |
|
|
|
|
C0900 |
HB_204 |
|
|
cc4_13 |
|
|
HB_512 |
|
|
|
IS193 |
|
HB_215 |
Overlaps a 5' UTR |
|
p1 |
|
|
HB_521 |
Experimentally tested |
|
|
|
C0945 |
HB_224 |
|
|
p29 |
|
C0950 |
HB_526 |
|
|
|
|
C0970 |
HB_528 |
|
|
|
|
C0973 |
HB_529 |
|
|
|
|
C0989 |
HB_536/HB_537 |
|
|
tp9 |
|
C1010 |
HB_543 |
|
|
tp9 |
|
|
HB_254 |
|
|
|
IS212 |
|
HB_257 |
|
|
t34 |
|
C1051 |
|
|
|
t34 |
|
|
HB_546 |
|
|
|
|
C1061 |
HB_548 |
|
|
|
|
C1066 |
HB_273/HB_274 |
|
|
|
|
C1067 |
HB_557/HB_558 |
|
|
tpke10 |
IS220 |
|
HB_276 |
Experimentally tested |
|
|
IS224 |
C1078 |
|
|
|
|
|
C1088 |
HB_285/HB_286 |
|
|
t13 |
|
|
HB_561 |
|
|
tpe80 |
|
|
HB_562 |
|