Namea

Table 4 Candidate sRNA genes that were not yet verified experimentally

Name^a	Source	Location^b	Strand^c	Adjacent genes^d	Overlapping candidates^e	Comments^f,g
tke2	Rivas et al.	257	unknown	thrL/thrA		Score: 15.16
						Resides within an operon
C0003	Tjaden et al.	8087-8159	-	yaaJ/talB
tp27	Rivas et al.	9193	unknown	talB/mog		Score: 11.06
HB_1	Carter et al.	10585-10642	+	yaaH/yaaW
HB_2	Carter et al.	16228-16307	+	dnaJ/gef
HB_3	Carter et al.	16548-16627	+	dnaJ/gef
HB_287	Carter et al.	16671-16750	-	dnaJ/gef
tpe88	Rivas et al.	16979	unknown	gefL/nhaA		Score: 6.95
IS001	Chen et al.	20666-20798	+	nhaR/rpsT
HB_288	Carter et al.	34701-34780	-	caiF/caiE
tpe4	Rivas et al.	45566	unknown	Not intergenic		Score: 22.29
						Experimentally tested
tpk4	Rivas et al.	47805	unknown	Not intergenic		Score: 21.77
						Experimentally tested
pe6	Rivas et al.	49634	unknown	kefC/folA		Score: 11.04
C0016	Tjaden et al.	49682-49780	+	kefC/folA
pe8	Rivas et al.	58182	unknown	djlA/yabP		Score: 10.13
HB_4	Carter et al.	58220-58299	+	djlA/yabP	HB_5 58260-58339 +	Overlaps a 5' UTR
HB_5	Carter et al.	58260-58339	+	djlA/yabP	HB_4 58220-58299 +	Overlaps a 5' UTR
HB_6	Carter et al.	59360-59439	+	yabQ/rluA		Overlaps a 3' UTR
HB_7	Carter et al.	63315-63394	+	hepA/polB
C0023	Tjaden et al.	70222-70340	+	araB/araC
tpe79	Rivas et al.	75482	unknown	tbpA/yabN		Score: 8.56
C0027	Tjaden et al.	77461-77533	+	yabN/yabM
tpe18	Rivas et al.	83537	unknown	leuA/leuL		Score: 15.23
						Resides within an operon
tpe6	Rivas et al.	85320	unknown	leuO/ilvI		Score: 21.63
						Experimentally tested
k51	Rivas et al.	107497	unknown	lpxC/srrA		Score: 5.17
HB_8	Carter et al.	117680-117751	+	ppdD/nadC
HB_9	Carter et al.	127788-127861	+	aceF/lpd		Resides within an operon
tpe34	Rivas et al.	136467	unknown	speE/yacC		Score: 13.13
HB_289	Carter et al.	164600-164679	-	hrpB/mrcB
IS003	Chen et al.	167267-167427	-	mrcB/fhuA
C0042	Tjaden et al.	174939-175081	+	hemL/yadQ
HB_291	Carter et al.	182309-182354	-	degP/yaeG	HB_290 182315-182394 -
					tpe90 182320
HB_290	Carter et al.	182315-182394	-	degP/yaeG	tpe90 182320
					HB_291 182309-182354 -
tpe90	Rivas et al.	182320	unknown	degP/yaeG	HB_290 182315-182394 -	Score: 6.62
					HB_291 182309-182354 -
HB_10	Carter et al.	183621-183700	+	yaeG/yaeH	HB_11 183661-183708 +
HB_11	Carter et al.	183661-183708	+	yaeG/yaeH	HB_10 183621-183700 +
C0049	Tjaden et al.	190613-190847	-	rpsB/tsf
IS004	Chen et al.	191706-191797	-	tsf/pyrH	tk7 191710
					psrA1 191713-191793 -
tk7	Rivas et al.	191710	unknown	tsf/pyrH	IS004 191706-191797 -	Score: 13.03
						Resides within an operon
psrA1	Argaman et al.	191713-191793	-	tsf/pyrH	IS004 191706-191797 -
C0052	Tjaden et al.	192666-192850	-	pyrH/frr
tpe3	Rivas et al.	193445	unknown	frr/dxr		Score: 23.88
						Experimentally tested Resides within an operon
C0057	Tjaden et al.	200372-200470	-	yaeT/hlpA
tp51	Rivas et al.	201998	unknown	lpxD/fabZ		Score: 5.83
						Resides within an operon
HB_292	Carter et al.	214001-214080	-	Not intergenic		Overlaps a 5' UTR
tk18	Rivas et al.	219997	unknown	rcsF/yaeC		Score: 6.14
HB_293	Carter et al.	223441-223520	-	yaeD/rrsH
HB_12	Carter et al.	223489-223568	+	yaeD/rrsH	HB_13 223529-223608 +	Resides within an operon
HB_13	Carter et al.	223529-223608	+	yaeD/rrsH	HB_12 223489-223568 +	Resides within an operon
IS005	Chen et al.	225589-225706	-	alaV/rrlH
t47	Rivas et al.	229006	unknown	aspU/yafB		Score: 7.56
pe13	Rivas et al.	230998	unknown	yafC/yafD		Score: 7.52
C0065	Tjaden et al.	236814-236897	+	dnaQ/aspV
C0066	Tjaden et al.	237091-237297	+	aspV/yafT
HB_294	Carter et al.	239339-239418	-	Not intergenic
C0070	Tjaden et al.	245831-245907	+	yafK/yafQ
HB_14	Carter et al.	248295-248357	+	yafM/fhiA
C0072	Tjaden et al.	256435-256515	-	gpt/yafA
C0073	Tjaden et al.	259483-259571	+	phoE/proB
k15	Rivas et al.	261982	unknown	proA/thrW		Score: 11.33
HB_295	Carter et al.	263320-263399	-	Not intergenic
HB_15	Carter et al.	263362-263441	+	Not intergenic
C0074	Tjaden et al.	268372-268463	+	ykfA/perR
HB_296	Carter et al.	271480-271555	-	perR/ykfC
HB_16	Carter et al.	271480-271559	+	perR/ykfC	HB_17 271520-271599 +	Resides within an operon
HB_17	Carter et al.	271520-271599	+	perR/ykfC	HB_18 271560-271639 +	Resides within an operon
					HB_16 271480-271559 +
HB_18	Carter et al.	271560-271639	+	perR/ykfC	HB_17 271520-271599 +	Resides within an operon
HB_19	Carter et al.	271640-271719	+	perR/ykfC	HB_20 271680-271759 +	Resides within an operon
HB_20	Carter et al.	271680-271759	+	perR/ykfC	HB_21 271720-271799 +	Resides within an operon
					HB_19 271640-271719 +
HB_21	Carter et al.	271720-271799	+	perR/ykfC	HB_20 271680-271759 +	Resides within an operon
HB_22	Carter et al.	271880-271959	+	perR/ykfC	HB_23 271920-271999 +	Resides within an operon
HB_23	Carter et al.	271920-271999	+	perR/ykfC	HB_24 271960-272035 +	Resides within an operon
					HB_22 271880-271959 +
HB_24	Carter et al.	271960-272035	+	perR/ykfC	HB_23 271920-271999 +	Resides within an operon
HB_297	Carter et al.	279369-279448	-	afuB/yagB		Overlaps a 5' UTR
HB_25	Carter et al.	279430-279509	+	afuB/yagB
HB_299	Carter et al.	281271-281350	-	yagA/yagE	HB_298 281311-281390 -
HB_26	Carter et al.	281298-281377	+	yagA/yagE
HB_298	Carter et al.	281311-281390	-	yagA/yagE	HB_299 281271-281350 -
IS007	Chen et al.	284398-284523	-	yagF/yagG
C0077	Tjaden et al.	284425-284500	+	yagF/yagG
HB_27	Carter et al.	288437-288516	+	yagI/argF	HB_28 288477-288524 +
HB_28	Carter et al.	288477-288524	+	yagI/argF	HB_27 288437-288516 +
C0078	Tjaden et al.	289535-289661	-	argF/yagJ
IS008	Chen et al.	289594-289856	+	argF/yagJ	HB_29 289620-289699 +
HB_29	Carter et al.	289620-289699	+	argF/yagJ	IS008 289594-289856 +
IS009	Chen et al.	302835-303034	-	yagU/ykgJ
k34	Rivas et al.	309252	unknown	yagY/yagZ		Score: 7.49
HB_30	Carter et al.	311211-311285	+	ykgK/ykgL
HB_31	Carter et al.	312612-312691	+	ykgM/eaeH
C0083	Tjaden et al.	353936-354076	-	prpE/codB
HB_300	Carter et al.	356775-356854	-	codA/cynR
C0085	Tjaden et al.	374105-374609	-	mhpE/mhpT
HB_32	Carter et al.	376696-376758	+	yaiL/yaiM
C0086	Tjaden et al.	379197-379268	+	yaiN/yaiO	HB_33 379217-379292 +
HB_33	Carter et al.	379217-379292	+	yaiN/yaiO	C0086 379197-379268 +
HB_34	Carter et al.	387871-387950	+	tauD/hemB	HB_35 387911-387976 +
HB_35	Carter et al.	387911-387976	+	tauD/hemB	HB_34 387871-387950 +
C0087	Tjaden et al.	395627-395801	+	ampH/sbmA
p14	Rivas et al.	402834	unknown	psiF/yaiC		Score: 9.44
C0090	Tjaden et al.	408255-408327	+	ykiA/yaiD
tp47	Rivas et al.	418413	unknown	phoR/brnQ		Score: 6.71
pe11	Rivas et al.	420136	unknown	brnQ/proY		Score: 9.73
HB_302	Carter et al.	421584-421648	-	proY/malZ	HB_301 421609-421688 -
HB_301	Carter et al.	421609-421688	-	proY/malZ	HB_302 421584-421648 -
HB_36	Carter et al.	431488-431535	+	tsx/yajI
p27	Rivas et al.	434786	unknown	nusB/thiL		Score: 5.96
C0095	Tjaden et al.	440604-440652	-	xseB/thiI
tp55	Rivas et al.	450836	unknown	cyoA/ampG		Score: 5.16
IS011	Chen et al.	450965-451296	+	cyoA/ampG	tpe43 451113
tpe43	Rivas et al.	451113	unknown	cyoA/ampG	IS011 450965-451296 +	Score: 11.80
						Experimentally tested
t2	Rivas et al.	454015	unknown	bolA/tig		Score: 24.93
						Experimentally tested Resides within an operon
IS012	Chen et al.	454059-454263	-	bolA/tig	psrA2 454066-454262 -
psrA2	Argaman et al.	454066-454262	-	bolA/tig	IS012 454059-454263 -
C0102	Tjaden et al.	454271-454319	-	bolA/tig
te1	Rivas et al.	455657	unknown	tig/clpP		Score: 32.63
						Experimentally tested
t22	Rivas et al.	460468	unknown	lon/hupB		Score: 12.20
t45	Rivas et al.	460949	unknown	hupB/ppiD		Score: 7.80
e8	Rivas et al.	463012	unknown	ppiD/ybaV		Score: 8.86
t24	Rivas et al.	463535	unknown	ybaV/ybaW		Score: 11.71
IS014	Chen et al.	480028-480388	+	ybaJ/acrB
k52	Rivas et al.	484845	unknown	acrA/acrR		Score: 5.09
						Overlaps a 5' UTR
C0111	Tjaden et al.	489137-489315	-	aefA/ybaM
C0112	Tjaden et al.	490516-490630	-	ybaN/apt
C0114	Tjaden et al.	491249-491314	-	apt/dnaX
C0116	Tjaden et al.	496227-496317	-	htpG/adk
HB_37	Carter et al.	497044-497123	+	adk/hemH		Overlaps a 3' UTR
C0118	Tjaden et al.	497096-497144	-	adk/hemH
pk1	Rivas et al.	502518	unknown	ybaL/fsr		Score: 14.54
C0120	Tjaden et al.	507786-508062	-	ybaQ/ybaR	HB_304 507819-507898 -
					HB_303 507939-508018 -
HB_304	Carter et al.	507819-507898	-	ybaQ/ybaR	C0120 507786-508062 -
HB_303	Carter et al.	507939-508018	-	ybaQ/ybaR	C0120 507786-508062 -
HB_38	Carter et al.	547692-547771	+	Not intergenic	HB_39 547732-547787 +
HB_39	Carter et al.	547732-547787	+	Not intergenic	HB_38 547692-547771 +
HB_305	Carter et al.	550556-550629	-	ybcF/purK		Overlaps a 3' UTR
HB_40	Carter et al.	550676-550749	+	ybcF/purK
C0125	Tjaden et al.	552356-552429	+	purE/ybbF
IS015	Chen et al.	557205-557329	+	folD/sfmA
IS016	Chen et al.	567886-568040	-	emrE/ybcK
IS017	Chen et al.	569905-570047	-	ybcK/ybcL
HB_306	Carter et al.	572969-573048	-	Not intergenic
IS018	Chen et al.	573636-573747	+	ybcQ/nmpC	HB_41 573643-573722 +
HB_41	Carter et al.	573643-573722	+	ybcQ/nmpC	IS018 573636-573747 +
C0129	Tjaden et al.	576300-576615	+	nmpC/essD	IS019 576356-576507 +
IS019	Chen et al.	576356-576507	+	nmpC/essD	C0129 576300-576615 +
HB_42	Carter et al.	578367-578406	+	ybcU/ybcV
IS020	Chen et al.	579526-579667	+	ybcW/nohB
IS021	Chen et al.	583781-583900	+	appY/ompT
IS022	Chen et al.	584964-585220	+	ompT/envY
C0130	Tjaden et al.	585176-585257	-	ompT/envY
HB_43	Carter et al.	585227-585306	+	ompT/envY
HB_307	Carter et al.	585290-585369	-	ompT/envY
k38	Rivas et al.	594691	unknown	ylcA/ylcB		Score: 7.31
HB_308	Carter et al.	596224-596303	-	ylcB/ylcC
HB_44	Carter et al.	606897-606976	+	ybdK/ybdY	HB_45 606937-607016 +
HB_45	Carter et al.	606937-607016	+	ybdK/ybdY	HB_44 606897-606976 +
HB_309	Carter et al.	606958-607037	-	ybdK/ybdY
C0132	Tjaden et al.	607070-607166	+	Not intergenic	HB_46 607097-607176 +
HB_46	Carter et al.	607097-607176	+	Not intergenic	C0132 607070-607166 +
HB_47	Carter et al.	607177-607237	+	Not intergenic
HB_48	Carter et al.	608401-608480	+	ybdY/entD
HB_49	Carter et al.	608601-608680	+	ybdY/entD
HB_50	Carter et al.	613283-613329	+	Not intergenic		Resides within an operon
C0137	Tjaden et al.	613286-613363	-	Not intergenic
pe5	Rivas et al.	617278	unknown	entF/fepE		Score: 11.20
HB_51	Carter et al.	623784-623863	+	fepB/entC	HB_52 623824-623903 +
HB_52	Carter et al.	623824-623903	+	fepB/entC	HB_51 623784-623863 +
IS023	Chen et al.	623829-624038	-	fepB/entC		Overlaps a 5' UTR
C0140	Tjaden et al.	628936-629050	-	ybdB/cstA
HB_53	Carter et al.	631223-631302	+	cstA/ybdD
HB_310	Carter et al.	631252-631331	-	cstA/ybdD	C0142 631320-631487 -
C0142	Tjaden et al.	631320-631487	-	Not intergenic	HB_310 631252-631331 -
IS024	Chen et al.	637912-638025	+	dsbG/ahpC		Overlaps a 5' UTR
HB_313	Carter et al.	638732-638775	-	ahpC/ahpF	HB_312 638736-638815 -
HB_312	Carter et al.	638736-638815	-	ahpC/ahpF	HB_311 638776-638855 -
					HB_313 638732-638775 -
HB_311	Carter et al.	638776-638855	-	ahpC/ahpF	HB_312 638736-638815 -
k32	Rivas et al.	643240	unknown	rnk/rna		Score: 7.56
						Resides within an operon
C0149	Tjaden et al.	659535-659634	+	lipA/ybeF
HB_54	Carter et al.	661526-661601	+	lipB/ybeD
tk8	Rivas et al.	661867	unknown	ybeD/dacA		Score: 12.21
						Resides within an operon
k36	Rivas et al.	668153	unknown	Not intergenic		Score: 7.40
						Overlaps a 5' UTR
C0157	Tjaden et al.	683647-683729	+	ybeK/gltL
HB_314	Carter et al.	685982-686061	-	gltJ/ybeJ		Overlaps a 3' UTR
HB_55	Carter et al.	685983-686061	+	gltJ/ybeJ
C0161	Tjaden et al.	696662-696695	+	metT/asnB
IS026	Chen et al.	698444-698601	-	asnB/nagD
C0162	Tjaden et al.	698476-698787	+	asnB/nagD
C0164	Tjaden et al.	705149-705271	-	nagE/glnS
IS027	Chen et al.	707168-707344	-	glnS/ybfM
tp28	Rivas et al.	709961	unknown	fur/fldA		Score: 10.62
						Overlaps a 5' UTR
p12	Rivas et al.	711192	unknown	ybfE/ybfF		Score: 11.06
C0168	Tjaden et al.	712103-712177	-	ybfF/seqA
e17	Rivas et al.	719685	unknown	speF/ybfK		Score: 5.66
HB_56	Carter et al.	719854-719933	+	Not intergenic	HB_57 719894-719973 +
HB_57	Carter et al.	719894-719973	+	Not intergenic	HB_56 719854-719933 +
IS028	Chen et al.	728577-728738	-	ybfA/rhsC
C0171	Tjaden et al.	740155-740296	-	phrB/ybgH
IS029	Chen et al.	752270-752396	+	ybgD/gltA
HB_58	Carter et al.	753782-753861	+	gltA/sdhC
HB_315	Carter et al.	754150-754229	-	gltA/sdhC
HB_59	Carter et al.	754262-754341	+	gltA/sdhC	HB_60 754302-754349 +	Overlaps a 5' UTR
HB_60	Carter et al.	754302-754349	+	gltA/sdhC	HB_59 754262-754341 +	Overlaps a 5' UTR
C0175	Tjaden et al.	761963-762219	-	sucB/sucC
k48	Rivas et al.	764274	unknown	sucD/farR		Score: 5.72
IS030	Chen et al.	769959-770055	+	ybgG/cydA
tpe29	Rivas et al.	773827	unknown	ybgE/ybgC		Score: 13.84
C0180	Tjaden et al.	776842-776939	-	tolA/tolB
IS031	Chen et al.	779607-779718	-	ybgF/lysT	C0182 779628-779747 -
C0182	Tjaden et al.	779628-779747	-	ybgF/lysT	IS031 779607-779718 -
HB_61	Carter et al.	779853-779932	+	lysT/valT	HB_62 779893-779937 +
HB_62	Carter et al.	779893-779937	+	lysT/valT	HB_61 779853-779932 +
C0183	Tjaden et al.	780667-780793	-	lysZ/lysQ
HB_63	Carter et al.	780668-780747	+	lysZ/lysQ
HB_64	Carter et al.	780916-780995	+	lysQ/nadA
IS033	Chen et al.	781029-781252	-	lysQ/nadA
C0187	Tjaden et al.	786899-786975	+	gpmA/galM
HB_65	Carter et al.	791449-791528	+	galE/modF
C0188	Tjaden et al.	793891-793971	-	modE/ybhT
HB_316	Carter et al.	802572-802651	-	ybhI/ybhJ
C0189	Tjaden et al.	804999-805120	-	ybhJ/ybhC
tk12	Rivas et al.	808482	unknown	bioA/bioB		Score: 10.09
HB_66	Carter et al.	812251-812330	+	bioD/uvrB	IS035 812251-812372 +
					HB_67 812291-812370 +
IS035	Chen et al.	812251-812372	+	bioD/uvrB	HB_67 812291-812370 +
					HB_66 812251-812330 +
HB_67	Carter et al.	812291-812370	+	bioD/uvrB	IS035 812251-812372 +
					HB_66 812251-812330 +
e16	Rivas et al.	829880	unknown	ybiH/rhlE		Score: 5.82
C0192	Tjaden et al.	831471-831653	-	rhlE/ybiA
HB_318	Carter et al.	835434-835483	-	ybiB/ybiC	HB_317 835444-835523 -
HB_317	Carter et al.	835444-835523	-	ybiB/ybiC	HB_318 835434-835483 -
C0194	Tjaden et al.	836732-836807	+	ybiC/ybiJ	HB_68 836740-836819 +
HB_68	Carter et al.	836740-836819	+	ybiC/ybiJ	C0194 836732-836807 +
C0197	Tjaden et al.	846352-846479	+	glnP/glnH	HB_69 846393-846472 +
HB_69	Carter et al.	846393-846472	+	glnP/glnH	C0197 846352-846479 +
C0198	Tjaden et al.	847276-847423	-	glnH/dps
C0200	Tjaden et al.	849580-849657	-	ybiF/ompX
HB_70	Carter et al.	858375-858435	+	ybiU/ybiV
p25	Rivas et al.	887194	unknown	ybjK/ybjL		Score: 6.15
tk16	Rivas et al.	892670	unknown	ybjN/potF		Score: 6.35
C0209	Tjaden et al.	898873-899054	-	ybjF/artJ
IS036	Chen et al.	899863-899959	+	artJ/artM	IS037 899906-900056 +
IS037	Chen et al.	899906-900056	+	artJ/artM	IS036 899863-899959 +
HB_71	Carter et al.	910323-910402	+	poxB/ybjV
k2	Rivas et al.	914218	unknown	ybjE/aqpZ		Score: 21.47
						Experimentally tested
HB_72	Carter et al.	914259-914338	+	ybjE/aqpZ	HB_73 914299-914378 +
HB_73	Carter et al.	914299-914378	+	ybjE/aqpZ	HB_72 914259-914338 +
IS038	Chen et al.	915522-915655	+	aqpZ/ybjD
tk5	Rivas et al.	921522	unknown	ybjZ/cspD		Score: 13.88
HB_74	Carter et al.	924764-924843	+	clpA/serW
C0215	Tjaden et al.	924883-924970	+	clpA/serW
t70	Rivas et al.	925385	unknown	serW/infA		Score: 5.57
HB_319	Carter et al.	931688-931767	-	trxB/lrp
t6	Rivas et al.	932314	unknown	lrp/ftsK		Score: 19.45
						Experimentally tested
k45	Rivas et al.	938568	unknown	ycaJ/serS		Score: 6.34
						Resides within an operon
k25	Rivas et al.	950305	unknown	pflA/pflB		Score: 9.64
t25	Rivas et al.	960253	unknown	ycaL/cmk		Score: 10.97
C0230	Tjaden et al.	962916-963038	-	rpsA/ihfB	tpe1 962930
tpe1	Rivas et al.	962930	unknown	rpsA/ihfB	C0230 962916-963038 -	Score: 24.75
						Experimentally tested Resides within an operon
pe10	Rivas et al.	963339	unknown	ihfB/ycaI		Score: 10.02
HB_320	Carter et al.	970822-970884	-	kdsB/ycbJ
C0233	Tjaden et al.	980151-980226	+	mukB/ycbB
C0234	Tjaden et al.	980171-980267	-	mukB/ycbB
k43	Rivas et al.	982119	unknown	ycbB/ycbK		Score: 6.43
C0236	Tjaden et al.	983535-983721	-	ycbL/aspC
tpke118	Rivas et al.	984934	unknown	aspC/ompF		Score: 9.14
						Experimentally tested
C0238	Tjaden et al.	985039-985113	+	aspC/ompF
t51	Rivas et al.	986207	unknown	ompF/asnS		Score: 7.35
C0243	Tjaden et al.	989694-989812	+	pncB/pepN
t30	Rivas et al.	1005016	unknown	pyrD/ycbW		Score: 9.65
HB_321	Carter et al.	1006937-1007016	-	ycbX/ycbY
p23	Rivas et al.	1014688	unknown	ymbA/rmf		Score: 6.99
IS042	Chen et al.	1014724-1014910	+	ymbA/rmf
C0246	Tjaden et al.	1014847-1014923	-	ymbA/rmf
C0248	Tjaden et al.	1017551-1017675	+	ycbZ/ycbG
e3	Rivas et al.	1018167	unknown	ycbG/ompA		Score: 16.21
C0250	Tjaden et al.	1019457-1019577	+	ompA/sulA
C0252	Tjaden et al.	1029189-1029267	+	yccW/yccX
HB_75	Carter et al.	1031266-1031311	+	serT/hyaA		Overlaps a 5' UTR
HB_76	Carter et al.	1039736-1039789	+	Not intergenic		Resides within an operon
HB_323	Carter et al.	1049040-1049119	-	ymcD/cspH	HB_322 1049080-1049159 -
HB_322	Carter et al.	1049080-1049159	-	ymcD/cspH	HB_323 1049040-1049119 -
IS043	Chen et al.	1050440-1050555	-	cspH/cspG	C0258 1050518-1050678 -
C0258	Tjaden et al.	1050518-1050678	-	cspH/cspG	IS043 1050440-1050555 -
C0260	Tjaden et al.	1051340-1051510	+	Not intergenic
C0263	Tjaden et al.	1067392-1067559	-	Not intergenic
C0265	Tjaden et al.	1078410-1078489	+	putA/putP
k10	Rivas et al.	1080042	unknown	putP/ycdN		Score: 13.52
HB_324	Carter et al.	1080160-1080239	-	putP/ycdN	C0267 1080196-1080293 -
C0267	Tjaden et al.	1080196-1080293	-	putP/ycdN	HB_324 1080160-1080239 -
IS045	Chen et al.	1102640-1103008	+	csgD/csgB
C0272	Tjaden et al.	1112684-1112759	+	mdoH/yceK
t56	Rivas et al.	1121839	unknown	pyrC/yceB		Score: 6.90
C0276	Tjaden et al.	1124608-1124743	+	yceL/rimJ
t48	Rivas et al.	1140213	unknown	flgL/rne		Score: 7.55
t54	Rivas et al.	1146775	unknown	rpmF/plsX		Score: 7.03
						Resides within an operon
t74	Rivas et al.	1152418	unknown	fabF/pabC		Score: 5.17
t62	Rivas et al.	1156799	unknown	ycfH/ptsG		Score: 6.23
t23	Rivas et al.	1158528	unknown	ptsG/fhuE		Score: 11.81
HB_325	Carter et al.	1164978-1165057	-	ycfP/ndh
tpk6	Rivas et al.	1165110	unknown	ycfP/ndh		Score: 16.16
HB_327	Carter et al.	1166652-1166731	-	ndh/ycfJ	HB_326 1166692-1166771 -
HB_326	Carter et al.	1166692-1166771	-	ndh/ycfJ	HB_327 1166652-1166731 -
C0288	Tjaden et al.	1179616-1179699	-	cobB/ycfZ
e13	Rivas et al.	1195607	unknown	icd/ymfD		Score: 7.21
IS050	Chen et al.	1195609-1195836	-	icd/ymfD	C0292 1195705-1195804 -
C0292	Tjaden et al.	1195705-1195804	-	icd/ymfD	IS050 1195609-1195836 -
HB_328	Carter et al.	1201334-1201401	-	ymfI/ymfK
HB_77	Carter et al.	1201334-1201413	+	ymfI/ymfK
t64	Rivas et al.	1210669	unknown	Not intergenic		Score: 5.91
IS052	Chen et al.	1216232-1216376	-	ymgC/ycgG
HB_78	Carter et al.	1222682-1222761	+	Not intergenic
IS054	Chen et al.	1223125-1223269	-	ycgI/minE	IS055 1223195-1223288 -
HB_79	Carter et al.	1223171-1223250	+	ycgI/minE
IS055	Chen et al.	1223195-1223288	-	ycgI/minE	IS054 1223125-1223269 -
C0294	Tjaden et al.	1223306-1223396	-	ycgI/minE
HB_80	Carter et al.	1226232-1226293	+	ycgJ/ycgK
k49	Rivas et al.	1227965	unknown	ycgM/ycgN		Score: 5.46
C0300	Tjaden et al.	1232303-1232384	-	dsbB/nhaB
IS056	Chen et al.	1236615-1236718	-	ycgB/dadA
HB_81	Carter et al.	1239173-1239252	+	dadX/ycgO
tp21	Rivas et al.	1255837	unknown	ycgV/ychF		Score: 13.34
C0304	Tjaden et al.	1260026-1260101	-	ychM/prs
C0305	Tjaden et al.	1260061-1260149	+	ychM/prs
C0307	Tjaden et al.	1261103-1261247	+	prs/ychB
HB_342	Carter et al.	1268332-1268411	-	kdsA/chaA	HB_341 1268372-1268451 -
HB_341	Carter et al.	1268372-1268451	-	kdsA/chaA	HB_342 1268332-1268411 -
p13	Rivas et al.	1268489	unknown	kdsA/chaA		Score: 9.59
						Overlaps a 3' UTR
HB_340	Carter et al.	1268532-1268611	-	kdsA/chaA	HB_339 1268572-1268651 -
HB_339	Carter et al.	1268572-1268651	-	kdsA/chaA	HB_338 1268612-1268691 -
					HB_340 1268532-1268611 -
HB_338	Carter et al.	1268612-1268691	-	kdsA/chaA	HB_339 1268572-1268651 -
HB_337	Carter et al.	1268852-1268931	-	kdsA/chaA	HB_336 1268892-1268971 -
HB_336	Carter et al.	1268892-1268971	-	kdsA/chaA	HB_335 1268932-1269011 -
					HB_337 1268852-1268931 -
HB_335	Carter et al.	1268932-1269011	-	kdsA/chaA	HB_336 1268892-1268971 -
tpe83	Rivas et al.	1269024	unknown	kdsA/chaA		Score: 8.09
						Overlaps a 3' UTR
HB_334	Carter et al.	1269092-1269171	-	kdsA/chaA	HB_333 1269132-1269211 -
HB_333	Carter et al.	1269132-1269211	-	kdsA/chaA	HB_334 1269092-1269171 -
HB_332	Carter et al.	1269412-1269491	-	kdsA/chaA	HB_331 1269452-1269531 -
HB_331	Carter et al.	1269452-1269531	-	kdsA/chaA	HB_332 1269412-1269491 -
tpe95	Rivas et al.	1269546	unknown	kdsA/chaA		Score: 6.04
						Overlaps a 3' UTR
HB_330	Carter et al.	1269612-1269691	-	kdsA/chaA	HB_329 1269652-1269731 -
HB_329	Carter et al.	1269652-1269731	-	kdsA/chaA	HB_330 1269612-1269691 -
HB_343	Carter et al.	1278597-1278676	-	narK/narG
HB_82	Carter et al.	1285790-1285869	+	narI/tpr	C0313 1285808-1285883 +
					HB_83 1285830-1285881 +
C0313	Tjaden et al.	1285808-1285883	+	narI/tpr	HB_83 1285830-1285881 +
					HB_82 1285790-1285869 +
HB_83	Carter et al.	1285830-1285881	+	narI/tpr	C0313 1285808-1285883 +
					HB_82 1285790-1285869 +
C0314	Tjaden et al.	1286562-1286744	+	tyrV/tyrT
HB_346	Carter et al.	1286602-1286680	-	tyrV/tyrT	HB_345 1286641-1286720 -
HB_345	Carter et al.	1286641-1286720	-	tyrV/tyrT	HB_344 1286681-1286760 -
					HB_346 1286602-1286680 -
HB_344	Carter et al.	1286681-1286760	-	tyrV/tyrT	HB_345 1286641-1286720 -
C0318	Tjaden et al.	1290522-1290623	-	rssB/galU
HB_347	Carter et al.	1293409-1293488	-	tdk/ychG
HB_84	Carter et al.	1299109-1299155	+	ychE/oppA		Overlaps a 5' UTR
k35	Rivas et al.	1300839	unknown	oppA/oppB		Score: 7.44
						Resides within an operon
HB_85	Carter et al.	1306800-1306879	+	cls/kch
k33	Rivas et al.	1318464	unknown	Not intergenic		Score: 7.49
C0325	Tjaden et al.	1321159-1321239	-	trpL/trpH
HB_348	Carter et al.	1328902-1328981	-	yciN/topA
HB_86	Carter et al.	1328903-1328982	+	yciN/topA	HB_87 1328943-1329021 +	Overlaps a 5' UTR
HB_87	Carter et al.	1328943-1329021	+	yciN/topA	HB_86 1328903-1328982 +	Overlaps a 5' UTR
t31	Rivas et al.	1331692	unknown	topA/cysB		Score: 9.61
HB_88	Carter et al.	1333254-1333333	+	Not intergenic	HB_89 1333294-1333373 +
HB_89	Carter et al.	1333294-1333373	+	Not intergenic	HB_88 1333254-1333333 +
HB_349	Carter et al.	1333645-1333724	-	yciX/acnA
IS059	Chen et al.	1342431-1342640	-	yciT/yciR		Overlaps a 5' UTR
HB_90	Carter et al.	1344937-1345001	+	yciR/rnb
IS060	Chen et al.	1349187-1349375	+	fabI/ycjD
HB_352	Carter et al.	1349231-1349310	-	fabI/ycjD		Overlaps a 5' UTR
HB_351	Carter et al.	1349311-1349390	-	fabI/ycjD	HB_350 1349351-1349430 -
HB_350	Carter et al.	1349351-1349430	-	fabI/ycjD	HB_351 1349311-1349390 -
C0337	Tjaden et al.	1357334-1357442	-	ycjJ/ycjK	HB_353 1357434-1357513 -
HB_353	Carter et al.	1357434-1357513	-	ycjJ/ycjK	C0337 1357334-1357442 -
HB_91	Carter et al.	1357436-1357513	+	ycjJ/ycjK
HB_92	Carter et al.	1360573-1360652	+	ycjC/aldH
C0340	Tjaden et al.	1368076-1368174	-	pspE/ycjM
HB_354	Carter et al.	1407365-1407444	-	ydaN/dbpA
t29	Rivas et al.	1415412	unknown	recE/racC		Score: 9.79
t68	Rivas et al.	1416267	unknown	kil/sieB		Score: 5.58
C0345	Tjaden et al.	1417525-1417597	-	ydaG/racR
HB_93	Carter et al.	1417576-1417655	+	ydaG/racR
IS062	Chen et al.	1432742-1433125	-	ynaE/ynaF
C0346	Tjaden et al.	1433171-1433207	+	ynaE/ynaF
tke8	Rivas et al.	1435054	unknown	ompN/ydbK		Score: 6.07
C0347	Tjaden et al.	1439219-1439291	-	Not intergenic
HB_94	Carter et al.	1439259-1439338	+	Not intergenic
IS064	Chen et al.	1449521-1449621	+	tynA/maoC
IS065	Chen et al.	1463108-1463224	-	paaY/ydbA
IS066	Chen et al.	1463254-1463399	+	paaY/ydbA
C0350	Tjaden et al.	1488549-1488713	+	Not intergenic
HB_355	Carter et al.	1488680-1488759	-	Not intergenic		Overlaps a 5' UTR
HB_95	Carter et al.	1489457-1489536	+	cybB/ydcA		Overlaps a 3' UTR
IS067	Chen et al.	1489461-1489633	-	cybB/ydcA
C0352	Tjaden et al.	1489877-1489979	-	Not intergenic	HB_356 1489906-1489985 -
HB_356	Carter et al.	1489906-1489985	-	Not intergenic	C0352 1489877-1489979 -
HB_357	Carter et al.	1490204-1490243	-	ydcB/trg
HB_358	Carter et al.	1501191-1501270	-	Not intergenic
C0358	Tjaden et al.	1522401-1522473	-	yncE/ansP
HB_96	Carter et al.	1525417-1525496	+	yncH/rhsE
C0361	Tjaden et al.	1545201-1545329	+	yddG/fdnG
IS069	Chen et al.	1550236-1550402	+	fdnI/yddM
IS070	Chen et al.	1553777-1554007	-	sfcA/yddX	te3 1553785	Overlaps a 5' UTR Resides within an operon
te3	Rivas et al.	1553785	unknown	sfcA/yddX	IS070 1553777-1554007 -	Score: 17.63
						Overlaps a 5' UTR
C0365	Tjaden et al.	1553987-1554087	+	sfcA/yddX
HB_97	Carter et al.	1561231-1561310	+	yddT/yddU
C0369	Tjaden et al.	1568530-1568627	+	xasA/gadB
HB_98	Carter et al.	1577577-1577656	+	yddA/ydeM
IS071	Chen et al.	1580770-1580915	+	ydeN/ydeO
HB_99	Carter et al.	1582034-1582113	+	ydeO/ydeP
IS072	Chen et al.	1596191-1596326	+	ydeK/ydeV
C0372	Tjaden et al.	1609916-1609988	+	yneF/yneG
HB_100	Carter et al.	1620744-1620823	+	ydeE/ydeH
HB_359	Carter et al.	1627063-1627108	-	ydfH/ydfZ
IS073	Chen et al.	1630377-1630602	+	ydfJ/ydfK
C0376	Tjaden et al.	1636223-1636310	-	ydfY/cspI
C0382	Tjaden et al.	1640115-1640303	-	cspF/ydfT
HB_101	Carter et al.	1642458-1642537	+	ydfU/rem
te18	Rivas et al.	1643052	unknown	rem/relF		Score: 8.59
						Overlaps a 3' UTR
HB_102	Carter et al.	1643057-1643136	+	rem/relF
C0386	Tjaden et al.	1644948-1645054	-	flxA/ydfW	IS077 1644975-1645147 -
IS077	Chen et al.	1644975-1645147	-	flxA/ydfW	C0386 1644948-1645054 -
HB_103	Carter et al.	1647106-1647185	+	rzpQ/dicB
C0387	Tjaden et al.	1647224-1647351	-	rzpQ/dicB
HB_104	Carter et al.	1647266-1647345	+	rzpQ/dicB		Overlaps a 5' UTR
C0389	Tjaden et al.	1650738-1650900	-	intQ/rspB
C0392	Tjaden et al.	1663181-1663259	+	ynfI/ynfJ
IS078	Chen et al.	1669041-1669213	-	ynfM/asr
p31	Rivas et al.	1687778	unknown	manA/ydgA		Score: 5.05
C0398	Tjaden et al.	1694211-1694352	+	uidA/uidR
IS079	Chen et al.	1695141-1695301	+	uidR/hdhA
C0401	Tjaden et al.	1702604-1702818	+	ydgJ/ydgT
pk4	Rivas et al.	1712299	unknown	ydgR/gst		Score: 7.63
HB_360	Carter et al.	1716397-1716476	-	ydhA/ydhH
tpe20	Rivas et al.	1733277	unknown	ydhO/sodB		Score: 14.61
C0406	Tjaden et al.	1735523-1735633	-	ydhP/purR
IS081	Chen et al.	1739222-1739379	+	ydhC/cfa		Overlaps a 5' UTR
HB_361	Carter et al.	1739267-1739346	-	ydhC/cfa
e6	Rivas et al.	1753526	unknown	ydhZ/pykF		Score: 10.03
						Overlaps a 5' UTR
HB_362	Carter et al.	1753592-1753671	-	ydhZ/pykF
t50	Rivas et al.	1755137	unknown	pykF/lpp		Score: 7.50
t3	Rivas et al.	1755683	unknown	lpp/ynhG		Score: 23.48
						Experimentally tested
C0412	Tjaden et al.	1756794-1756890	+	ynhG/ynhA
HB_105	Carter et al.	1762901-1762957	+	ydiC/ydiH
HB_106	Carter et al.	1766800-1766879	+	ydiJ/ydiK	HB_107 1766840-1766919 +
HB_107	Carter et al.	1766840-1766919	+	ydiJ/ydiK	HB_106 1766800-1766879 +
C0417	Tjaden et al.	1787527-1787597	-	aroH/ydiE
tp13	Rivas et al.	1793178	unknown	btuC/ihfA		Score: 15.52
C0420	Tjaden et al.	1796981-1797146	+	pheS/pheM
HB_365	Carter et al.	1797050-1797129	-	pheS/pheM	HB_364 1797090-1797169 -	Resides within an operon
HB_364	Carter et al.	1797090-1797169	-	pheS/pheM	HB_365 1797050-1797129 -	Resides within an operon
HB_363	Carter et al.	1797170-1797249	-	pheS/pheM	te16 1797175	Resides within an operon
te16	Rivas et al.	1797175	unknown	pheS/pheM	HB_363 1797170-1797249 -	Score: 8.85
						Resides within an operon
tke6	Rivas et al.	1797296	unknown	pheM/rplT		Score: 8.06
C0421	Tjaden et al.	1798023-1798118	+	rpmI/infC	pk2 1798025
pk2	Rivas et al.	1798025	unknown	rpmI/infC	C0421 1798023-1798118 +	Score: 12.18
						Resides within an operon
HB_108	Carter et al.	1803218-1803297	+	arpB/ydiY	C0424 1803239-1803347 +
C0424	Tjaden et al.	1803239-1803347	+	arpB/ydiY	HB_108 1803218-1803297 +
IS085	Chen et al.	1804122-1804298	-	ydiY/pfkB
C0425	Tjaden et al.	1804173-1804380	+	ydiY/pfkB
HB_366	Carter et al.	1808073-1808132	-	yniC/ydjM
HB_367	Carter et al.	1820352-1820431	-	osmE/nadE
p5	Rivas et al.	1823032	unknown	ydjR/spy		Score: 16.94
						Experimentally tested
HB_109	Carter et al.	1823075-1823154	+	ydjR/spy
HB_368	Carter et al.	1848718-1848793	-	sppA/ansA
HB_110	Carter et al.	1859567-1859646	+	ydjL/yeaC
t17	Rivas et al.	1860602	unknown	yeaA/gapA		Score: 12.85
						Overlaps a 5' UTR
psrA6	Argaman et al.	1860608-1860782	-	yeaA/gapA	C0430 1860674-1860747 -
C0430	Tjaden et al.	1860674-1860747	-	yeaA/gapA	psrA6 1860608-1860782 -
tpk13	Rivas et al.	1861792	unknown	gapA/yeaD		Score: 11.64
HB_111	Carter et al.	1876925-1877004	+	yeaP/yeaQ
HB_112	Carter et al.	1878103-1878144	+	yeaR/yeaS
p24	Rivas et al.	1886017	unknown	rnd/fadD		Score: 6.42
psrA7	Argaman et al.	1887849-1887959	+	fadD/yeaY	IS087 1887856-1887966 +
IS087	Chen et al.	1887856-1887966	+	fadD/yeaY	psrA7 1887849-1887959 +
tp25	Rivas et al.	1896332	unknown	sdaA/yoaD		Score: 11.84
t37	Rivas et al.	1902772	unknown	manZ/yobD		Score: 8.82
IS089	Chen et al.	1903353-1903518	+	yobD/yebN	tp29 1903368
tp29	Rivas et al.	1903368	unknown	yobD/yebN	IS089 1903353-1903518 +	Score: 10.32
e7	Rivas et al.	1905163	unknown	rrmA/cspC		Score: 9.97
HB_113	Carter et al.	1906226-1906284	+	yobF/yebO
C0441	Tjaden et al.	1906979-1907060	+	yobG/kdgR
tp18	Rivas et al.	1910602	unknown	htpX/prc		Score: 13.83
HB_369	Carter et al.	1913215-1913294	-	Not intergenic		Resides within an operon
C0443	Tjaden et al.	1913291-1913450	+	Not intergenic
te5	Rivas et al.	1918171	unknown	yebT/yebU		Score: 12.95
tpke79	Rivas et al.	1921027	unknown	pphA/yebY		Score: 11.82
C0446	Tjaden et al.	1923028-1923126	-	yobA/holE
C0447	Tjaden et al.	1923381-1923459	+	holE/yobB
C0448	Tjaden et al.	1927890-1928002	+	yebE/yebF
k46	Rivas et al.	1932701	unknown	edd/zwf		Score: 5.96
p18	Rivas et al.	1938219	unknown	msbB/yebA		Score: 8.50
C0456	Tjaden et al.	1938259-1938335	+	msbB/yebA
C0459	Tjaden et al.	1942229-1942307	-	znuB/ruvB
k41	Rivas et al.	1944003	unknown	ruvA/yebB		Score: 6.50
C0462	Tjaden et al.	1946657-1946772	+	ntpA/aspS
C0463	Tjaden et al.	1948618-1948806	-	aspS/yecD
tp30	Rivas et al.	1975165	unknown	motA/flhC		Score: 9.75
C0466	Tjaden et al.	1975204-1975282	+	motA/flhC
te10	Rivas et al.	1976232	unknown	flhD/yecG		Score: 10.96
C0467	Tjaden et al.	1976435-1976516	+	flhD/yecG
C0469	Tjaden et al.	1984828-1984900	+	araF/yecI
HB_370	Carter et al.	1993511-1993590	-	uvrY/yecF
tpe40	Rivas et al.	1994067	unknown	yecF/sdiA		Score: 12.29
IS094	Chen et al.	1994968-1995087	+	sdiA/yecC	HB_115 1995026-1995084 +
HB_115	Carter et al.	1995026-1995084	+	sdiA/yecC	IS094 1994968-1995087 +
C0476	Tjaden et al.	2026113-2026208	+	yedQ/yodC
IS096	Chen et al.	2031644-2031766	+	yedR/yedS
C0478	Tjaden et al.	2033313-2033503	-	yedS/yedU
C0479	Tjaden et al.	2033664-2033850	+	yedS/yedU
C0480	Tjaden et al.	2039194-2039225	-	yedZ/yodA
C0481	Tjaden et al.	2040047-2040135	-	yodA/yodB
IS098	Chen et al.	2041113-2041206	+	yodB/serU
HB_371	Carter et al.	2041170-2041249	-	yodB/serU
C0485	Tjaden et al.	2060175-2060249	-	nac/asnV
HB_373	Carter et al.	2066340-2066419	-	yeeH/yoeA	HB_372 2066380-2066459 -
HB_372	Carter et al.	2066380-2066459	-	yeeH/yoeA	HB_373 2066340-2066419 -
HB_116	Carter et al.	2066434-2066513	+	yeeH/yoeA
C0486	Tjaden et al.	2072681-2072772	-	flu/yeeR
HB_374	Carter et al.	2076254-2076333	-	yeeW/yoeD	C0487 2076255-2076327 -
C0487	Tjaden et al.	2076255-2076327	-	yeeW/yoeD	HB_374 2076254-2076333 -
HB_117	Carter et al.	2076717-2076796	+	yoeD/yeeX
C0488	Tjaden et al.	2076954-2077027	+	yoeD/yeeX
HB_118	Carter et al.	2078664-2078743	+	yeeA/sbmC
HB_119	Carter et al.	2087241-2087320	+	Not intergenic	HB_120 2087281-2087360 +
HB_120	Carter et al.	2087281-2087360	+	Not intergenic	HB_119 2087241-2087320 +
HB_375	Carter et al.	2087284-2087363	-	Not intergenic
HB_121	Carter et al.	2088109-2088163	+	hisL/hisG		Overlaps a 5' UTR
te11	Rivas et al.	2111236	unknown	rfbB/galF		Score: 10.73
						Overlaps a 5' UTR
C0496	Tjaden et al.	2116472-2116688	-	wcaK/wzxC	HB_378 2116477-2116541 -
					HB_377 2116502-2116581 -
					HB_376 2116622-2116701 -
HB_378	Carter et al.	2116477-2116541	-	wcaK/wzxC	HB_377 2116502-2116581 -
					C0496 2116472-2116688 -
HB_377	Carter et al.	2116502-2116581	-	wcaK/wzxC	HB_378 2116477-2116541 -
					C0496 2116472-2116688 -
HB_376	Carter et al.	2116622-2116701	-	wcaK/wzxC	C0496 2116472-2116688 -
HB_122	Carter et al.	2116637-2116701	+	wcaK/wzxC
HB_123	Carter et al.	2137548-2137627	+	yegH/asmA	HB_124 2137588-2137667 +
HB_124	Carter et al.	2137588-2137667	+	yegH/asmA	HB_123 2137548-2137627 +
IS105	Chen et al.	2151195-2151378	+	yegL/yegM	tp11 2151247
					HB_125 2151321-2151400 +
tp11	Rivas et al.	2151247	unknown	yegL/yegM	IS105 2151195-2151378 +	Score: 15.88
HB_125	Carter et al.	2151321-2151400	+	yegL/yegM	IS105 2151195-2151378 +
HB_382	Carter et al.	2151401-2151480	-	yegL/yegM	HB_381 2151441-2151520 -
HB_381	Carter et al.	2151441-2151520	-	yegL/yegM	HB_382 2151401-2151480 -
HB_126	Carter et al.	2151601-2151680	+	yegL/yegM	tpe60 2151623
					HB_127 2151641-2151720 +
tpe60	Rivas et al.	2151623	unknown	yegL/yegM	HB_126 2151601-2151680 +	Score: 10.20
HB_127	Carter et al.	2151641-2151720	+	yegL/yegM	HB_126 2151601-2151680 + HB_128 2151681-2151760 +
HB_128	Carter et al.	2151681-2151760	+	yegL/yegM	HB_127 2151641-2151720 +
HB_380	Carter et al.	2151721-2151800	-	yegL/yegM	HB_379 2151761-2151840 -
HB_379	Carter et al.	2151761-2151840	-	yegL/yegM	HB_380 2151721-2151800 -
k24	Rivas et al.	2157702	unknown	Not intergenic		Score: 9.90
HB_383	Carter et al.	2163042-2163121	-	baeR/yegP
HB_384	Carter et al.	2163560-2163639	-	yegP/yegQ	t49 2163581
t49	Rivas et al.	2163581	unknown	yegP/yegQ	HB_384 2163560-2163639 -	Score: 7.51
HB_385	Carter et al.	2165244-2165323	-	yegQ/ogrK
C0502	Tjaden et al.	2175319-2175434	+	gatY/fbaB
IS107	Chen et al.	2175335-2175430	-	gatY/fbaB
tpe2	Rivas et al.	2190331	unknown	yehD/yehE		Score: 25.48
						Experimentally tested
IS108	Chen et al.	2190381-2190515	+	yehD/yehE
IS109	Chen et al.	2190859-2190978	-	yehE/mrp
C0506	Tjaden et al.	2213677-2213763	+	yehV/yehW
HB_386	Carter et al.	2217632-2217711	-	yehZ/bglX
C0509	Tjaden et al.	2224433-2224527	+	yohD/yohF
C0510	Tjaden et al.	2226932-2227408	+	yohG/yohI	k3 2227055
k3	Rivas et al.	2227055	unknown	yohG/yohI	C0510 2226932-2227408 +	Score: 20.83
						Experimentally tested
HB_388	Carter et al.	2227218-2227297	-	yohG/yohI
HB_387	Carter et al.	2227298-2227377	-	yohG/yohI
HB_390	Carter et al.	2230749-2230807	-	cdd/sanA	HB_389 2230768-2230847 -
					C0513 2230771-2230854 -
HB_389	Carter et al.	2230768-2230847	-	cdd/sanA	C0513 2230771-2230854 -
					HB_390 2230749-2230807 -
C0513	Tjaden et al.	2230771-2230854	-	cdd/sanA	HB_389 2230768-2230847 -
					HB_390 2230749-2230807 -
HB_391	Carter et al.	2234521-2234562	-	yeiA/mglC
C0516	Tjaden et al.	2238388-2238521	+	mglB/galS
HB_392	Carter et al.	2244840-2244882	-	cirA/lysP		Overlaps a 5' UTR
HB_129	Carter et al.	2245040-2245082	+	cirA/lysP
k21	Rivas et al.	2265733	unknown	yeiQ/yeiR		Score: 10.60
IS110	Chen et al.	2267589-2267948	-	yeiU/spr
t12	Rivas et al.	2268577	unknown	spr/rtn		Score: 14.11
k7	Rivas et al.	2280826	unknown	rplY/yejK		Score: 14.16
C0526	Tjaden et al.	2282002-2282129	+	yejK/yejL
IS112	Chen et al.	2288224-2288371	-	yejO/narP
HB_402	Carter et al.	2302448-2302527	-	eco/yojH
HB_401	Carter et al.	2302528-2302607	-	eco/yojH	HB_400 2302568-2302647 -
HB_400	Carter et al.	2302568-2302647	-	eco/yojH	HB_401 2302528-2302607 -
HB_399	Carter et al.	2302648-2302727	-	eco/yojH	HB_398 2302688-2302767 -
HB_398	Carter et al.	2302688-2302767	-	eco/yojH	HB_399 2302648-2302727 -
HB_397	Carter et al.	2302768-2302847	-	eco/yojH	HB_396 2302808-2302887 -
HB_396	Carter et al.	2302808-2302887	-	eco/yojH	HB_395 2302848-2302927 -
					HB_397 2302768-2302847 -
HB_395	Carter et al.	2302848-2302927	-	eco/yojH	HB_396 2302808-2302887 -
HB_394	Carter et al.	2302928-2303007	-	eco/yojH	HB_393 2302968-2303047 -
HB_393	Carter et al.	2302968-2303047	-	eco/yojH	HB_394 2302928-2303007 -
t36	Rivas et al.	2309559	unknown	apbE/ompC		Score: 9.13
IS114	Chen et al.	2311236-2311393	-	ompC/yojN
HB_130	Carter et al.	2317899-2317978	+	rcsC/atoS
HB_131	Carter et al.	2345211-2345290	+	nrdA/nrdB	HB_132 2345251-2345330 +	Resides within an operon
HB_132	Carter et al.	2345251-2345330	+	nrdA/nrdB	HB_133 2345291-2345353 +	Resides within an operon
					HB_131 2345211-2345290 +
HB_133	Carter et al.	2345291-2345353	+	nrdA/nrdB	HB_132 2345251-2345330 +	Resides within an operon
HB_134	Carter et al.	2360402-2360450	+	yfaX/yfaY
HB_135	Carter et al.	2378529-2378608	+	Not intergenic	C0536 2378534-2378740 +
					p26 2378544
C0536	Tjaden et al.	2378534-2378740	+	Not intergenic	p26 2378544
					HB_135 2378529-2378608 +
p26	Rivas et al.	2378544	unknown	Not intergenic	C0536 2378534-2378740 +	Score: 6.12
					HB_135 2378529-2378608 +
C0538	Tjaden et al.	2389373-2389530	+	nuoN/nuoM
HB_403	Carter et al.	2391145-2391224	-	nuoM/nuoL		Resides within an operon
IS115	Chen et al.	2403317-2403693	+	nuoA/lrhA	k30 2403505
					C0543 2403551-2403694 +
k30	Rivas et al.	2403505	unknown	nuoA/lrhA	IS115 2403317-2403693 +	Score: 7.95
						Overlaps a 5' UTR
C0543	Tjaden et al.	2403551-2403694	+	nuoA/lrhA	IS115 2403317-2403693 +
HB_405	Carter et al.	2404931-2405010	-	lrhA/yfbQ		Overlaps a 5' UTR
HB_404	Carter et al.	2405451-2405530	-	lrhA/yfbQ
tp19	Rivas et al.	2410635	unknown	yfbU/yfbV		Score: 13.64
HB_406	Carter et al.	2411203-2411279	-	yfbV/ackA		Overlaps a 5' UTR
IS116	Chen et al.	2411264-2411416	+	yfbV/ackA		Overlaps a 5' UTR
tpe27	Rivas et al.	2412694	unknown	ackA/pta		Score: 13.99
						Resides within an operon
HB_136	Carter et al.	2421690-2421755	+	yfcI/hisP
HB_407	Carter et al.	2428962-2429041	-	cvpA/dedD		Resides within an operon
tp35	Rivas et al.	2430968	unknown	folC/accD		Score: 8.74
e12	Rivas et al.	2434671	unknown	usg/pdxB		Score: 7.49
						Resides within an operon
HB_137	Carter et al.	2438271-2438350	+	yfcJ/fabB
tp36	Rivas et al.	2458494	unknown	yfcY/yfcZ		Score: 8.71
HB_138	Carter et al.	2458580-2458659	+	yfcY/yfcZ
HB_408	Carter et al.	2459190-2459269	-	yfcZ/fadL
HB_409	Carter et al.	2460667-2460741	-	fadL/yfdF	IS117 2460675-2460836 -
IS117	Chen et al.	2460675-2460836	-	fadL/yfdF	HB_409 2460667-2460741 -
p32	Rivas et al.	2465734	unknown	intS/yfdG		Score: 5.03
IS118	Chen et al.	2468477-2468607	-	yfdI/tfaS
C0566	Tjaden et al.	2474407-2474539	+	yfdT/dsdC
IS119	Chen et al.	2481544-2481657	-	emrK/evgA
IS120	Chen et al.	2491348-2491747	+	yfdW/yfdX
e10	Rivas et al.	2496317	unknown	yfdZ/ypdA		Score: 7.86
IS122	Chen et al.	2496319-2496526	-	yfdZ/ypdA
tp5	Rivas et al.	2508908	unknown	yfeO/yfeP		Score: 20.55
						Experimentally tested
C0570	Tjaden et al.	2508924-2509014	-	yfeO/yfeP
C0571	Tjaden et al.	2508935-2509019	+	yfeO/yfeP
HB_139	Carter et al.	2513464-2513543	+	nupC/yfeA
C0573	Tjaden et al.	2515973-2516058	+	yfeA/alaX
HB_140	Carter et al.	2519389-2519468	+	lysV/xapR
HB_411	Carter et al.	2525981-2526060	-	Not intergenic	HB_410 2526021-2526100 -
C0575	Tjaden et al.	2526001-2526073	+	Not intergenic
HB_410	Carter et al.	2526021-2526100	-	Not intergenic	HB_411 2525981-2526060 -
k29	Rivas et al.	2528198	unknown	ligA/zipA		Score: 8.14
						Resides within an operon
tpk8	Rivas et al.	2531402	unknown	cysK/ptsH		Score: 14.45
psrA9	Argaman et al.	2531422-2531608	-	cysK/ptsH
C0579	Tjaden et al.	2531669-2531767	-	cysK/ptsH
HB_412	Carter et al.	2537657-2537736	-	cysM/cysA		Resides within an operon
HB_141	Carter et al.	2541719-2541798	+	cysP/ucpA
HB_142	Carter et al.	2547547-2547626	+	yfeW/yfeX
C0592	Tjaden et al.	2559205-2559301	-	yffL/yffM
C0593	Tjaden et al.	2561161-2561457	-	yffP/yffQ	IS125 2561257-2561485 -
					HB_413 2561267-2561346 -
IS125	Chen et al.	2561257-2561485	-	yffP/yffQ	HB_413 2561267-2561346 -
					C0593 2561161-2561457 -
HB_413	Carter et al.	2561267-2561346	-	yffP/yffQ	IS125 2561257-2561485 -
					C0593 2561161-2561457 -
C0594	Tjaden et al.	2562393-2562498	-	yffR/yffS
HB_415	Carter et al.	2563381-2563460	-	yffS/eutA	HB_414 2563421-2563500 -
HB_414	Carter et al.	2563421-2563500	-	yffS/eutA	HB_415 2563381-2563460 -
C0595	Tjaden et al.	2576422-2576619	-	maeB/talA
HB_416	Carter et al.	2579674-2579753	-	tktB/ypfG		Overlaps a 3' UTR
C0599	Tjaden et al.	2590810-2590906	-	dapE/ypfH
HB_143	Carter et al.	2590955-2591034	+	dapE/ypfH
HB_417	Carter et al.	2598972-2599051	-	bcp/hyfA
HB_144	Carter et al.	2613992-2614063	+	yfgO/yfgC		Overlaps a 5' UTR
tk11	Rivas et al.	2618182	unknown	uraA/upp		Score: 10.47
						Resides within an operon
tpe92	Rivas et al.	2635420	unknown	yfgK/yfgL		Score: 6.31
						Resides within an operon
k20	Rivas et al.	2638654	unknown	hisS/gcpE		Score: 10.65
						Overlaps a 5' UTR Resides within an operon
HB_145	Carter et al.	2642354-2642433	+	yfgB/ndk
IS129	Chen et al.	2651687-2652078	-	sseA/sseB	HB_418 2651857-2651936 -
HB_418	Carter et al.	2651857-2651936	-	sseA/sseB	IS129 2651687-2652078 -
HB_146	Carter et al.	2660362-2660441	+	yfhP/yfhQ
HB_419	Carter et al.	2660403-2660482	-	yfhP/yfhQ		Resides within an operon
HB_147	Carter et al.	2687577-2687656	+	yfhG/yfhK
IS130	Chen et al.	2689279-2689628	+	yfhK/purL
C0623	Tjaden et al.	2693796-2693945	+	purL/yfhD
C0624	Tjaden et al.	2693860-2693932	-	purL/yfhD
tpke37	Rivas et al.	2702135	unknown	rnc/lepB		Score: 11.11
						Experimentally tested Overlaps a 5’ UTR
HB_148	Carter et al.	2702174-2702253	+	rnc/lepB	HB_149 2702214-2702293 +
HB_149	Carter et al.	2702214-2702293	+	rnc/lepB	HB_148 2702174-2702253 +
k27	Rivas et al.	2720642	unknown	yfiQ/pssA		Score: 8.61
						Resides within an operon
C0634	Tjaden et al.	2723788-2724007	+	kgtP/rrfG	HB_150 2723937-2724016 +
HB_150	Carter et al.	2723937-2724016	+	kgtP/rrfG	C0634 2723788-2724007 +
IS133	Chen et al.	2729285-2729623	+	rrsG/clpB	t55 2729424
C0635	Tjaden et al.	2729395-2729560	-	rrsG/clpB	t55 2729424
t55	Rivas et al.	2729424	unknown	rrsG/clpB	C0635 2729395-2729560 -	Score: 7.00
					IS133 2729285-2729623 +
tp44	Rivas et al.	2735517	unknown	yfiA/pheL		Score: 7.22
k28	Rivas et al.	2742137	unknown	yfiB/rplS		Score: 8.37
tpke89	Rivas et al.	2744207	unknown	rpsP/ffh		Score: 10.34
						Experimentally tested Resides within an operon
C0643	Tjaden et al.	2744245-2744315	+	rpsP/ffh	HB_151 2744296-2744375 +
HB_151	Carter et al.	2744296-2744375	+	rpsP/ffh	HB_152 2744336-2744415 +
					C0643 2744245-2744315 +
HB_152	Carter et al.	2744336-2744415	+	rpsP/ffh	HB_151 2744296-2744375 +
C0645	Tjaden et al.	2751490-2751789	+	Not intergenic
HB_421	Carter et al.	2751645-2751724	-	Not intergenic	HB_420 2751685-2751764 -
HB_420	Carter et al.	2751685-2751764	-	Not intergenic	HB_421 2751645-2751724 -
HB_422	Carter et al.	2754010-2754089	-	smpB/intA
IS135	Chen et al.	2759199-2759300	-	yfjJ/yfjK
HB_153	Carter et al.	2759275-2759354	+	yfjJ/yfjK
C0648	Tjaden et al.	2763425-2763497	+	yfjL/yfjM
HB_423	Carter et al.	2765435-2765514	-	yfjO/yfjP
IS136	Chen et al.	2765455-2765720	+	yfjO/yfjP
HB_425	Carter et al.	2769637-2769700	-	yfjT/yfjU	HB_424 2769661-2769740 -
HB_424	Carter et al.	2769661-2769740	-	yfjT/yfjU	HB_425 2769637-2769700 -
C0649	Tjaden et al.	2769734-2769823	+	yfjT/yfjU
HB_426	Carter et al.	2771169-2771248	-	Not intergenic
HB_154	Carter et al.	2773203-2773282	+	yfjW/ypjI	HB_155 2773243-2773322 +
HB_155	Carter et al.	2773243-2773322	+	yfjW/ypjI	HB_154 2773203-2773282 +
C0650	Tjaden et al.	2773402-2773509	-	yfjW/ypjI
HB_156	Carter et al.	2773603-2773682	+	Not intergenic
HB_157	Carter et al.	2773723-2773802	+	Not intergenic
HB_427	Carter et al.	2773770-2773849	-	Not intergenic
HB_158	Carter et al.	2774970-2775049	+	Not intergenic
C0651	Tjaden et al.	2775855-2776034	+	ypjF/ypjA
HB_159	Carter et al.	2776084-2776163	+	ypjF/ypjA
IS137	Chen et al.	2781499-2781595	-	pinH/ypjB
HB_160	Carter et al.	2792077-2792156	+	gabT/gabP	HB_161 2792117-2792196 +
HB_161	Carter et al.	2792117-2792196	+	gabT/gabP	HB_160 2792077-2792156 +
IS139	Chen et al.	2796784-2796963	-	stpA/ygaW
HB_428	Carter et al.	2798534-2798613	-	ygaM/nrdH
C0655	Tjaden et al.	2806169-2806300	-	proX/ygaY
t71	Rivas et al.	2809324	unknown	mprA/emrA		Score: 5.55
HB_429	Carter et al.	2815686-2815765	-	yqaB/argQ
t11	Rivas et al.	2815884	unknown	argQ/argZ		Score: 14.64
IS140	Chen et al.	2816358-2816471	+	argY/argV
HB_430	Carter et al.	2816375-2816454	-	argY/argV
HB_162	Carter et al.	2816918-2816982	+	serV/csrA
C0660	Tjaden et al.	2817195-2817247	+	csrA/alaS
tp54	Rivas et al.	2821794	unknown	recA/ygaD		Score: 5.32
HB_431	Carter et al.	2823650-2823724	-	mltB/srlA
HB_163	Carter et al.	2833069-2833148	+	ygbD/hypF
p7	Rivas et al.	2847874	unknown	hycB/hycA		Score: 14.84
						Resides within an operon
HB_432	Carter et al.	2864502-2864581	-	ygbN/rpoS
tpe75	Rivas et al.	2870845	unknown	ygbQ/ygbE		Score: 9.09
						Overlaps a 5' UTR
HB_164	Carter et al.	2875642-2875721	+	iap/ygbF
HB_440	Carter et al.	2875672-2875751	-	iap/ygbF
HB_439	Carter et al.	2875792-2875871	-	iap/ygbF	HB_438 2875832-2875911 -
HB_438	Carter et al.	2875832-2875911	-	iap/ygbF	HB_437 2875872-2875951 -
					HB_439 2875792-2875871 -
HB_437	Carter et al.	2875872-2875951	-	iap/ygbF	HB_438 2875832-2875911 -
HB_165	Carter et al.	2875922-2876001	+	iap/ygbF
HB_166	Carter et al.	2876042-2876121	+	iap/ygbF
HB_436	Carter et al.	2876072-2876151	-	iap/ygbF
HB_167	Carter et al.	2876122-2876201	+	iap/ygbF	HB_168 2876162-2876241 +
HB_168	Carter et al.	2876162-2876241	+	iap/ygbF	HB_167 2876122-2876201 +
HB_435	Carter et al.	2876232-2876311	-	iap/ygbF	HB_434 2876272-2876351 -
					IS141 2876310-2876479 -
HB_434	Carter et al.	2876272-2876351	-	iap/ygbF	IS141 2876310-2876479 -
					HB_433 2876312-2876391 -
					HB_435 2876232-2876311 -
IS141	Chen et al.	2876310-2876479	-	iap/ygbF	HB_433 2876312-2876391 -
					HB_434 2876272-2876351 -
					HB_435 2876232-2876311 -
HB_433	Carter et al.	2876312-2876391	-	iap/ygbF	IS141 2876310-2876479 -
					HB_434 2876272-2876351 -
HB_169	Carter et al.	2876322-2876401	+	iap/ygbF
IS142	Chen et al.	2885306-2885437	+	ygcB/cysH
C0673	Tjaden et al.	2886336-2886408	+	cysH/cysI
C0674	Tjaden et al.	2892830-2892926	-	ygcP/ygcQ
HB_170	Carter et al.	2901397-2901476	+	ygcE/ygcF
HB_442	Carter et al.	2902089-2902168	-	ygcE/ygcF
HB_441	Carter et al.	2902209-2902288	-	ygcE/ygcF
HB_171	Carter et al.	2902277-2902356	+	ygcE/ygcF
C0676	Tjaden et al.	2905967-2906047	+	eno/pyrG
C0680	Tjaden et al.	2922341-2922536	+	yqcC/syd
pke3	Rivas et al.	2922553	unknown	yqcC/syd		Score: 6.77
IS143	Chen et al.	2925871-2926018	+	ygdH/sdaC
IS144	Chen et al.	2931888-2932014	-	fucA/fucP
e11	Rivas et al.	2937334	unknown	fucU/fucR		Score: 7.83
HB_172	Carter et al.	2962290-2962369	+	ppdA/thyA
HB_173	Carter et al.	2964110-2964189	+	lgt/ptsP
HB_443	Carter et al.	2969156-2969202	-	ygdQ/ygdR	t77 2969166
t77	Rivas et al.	2969166	unknown	ygdQ/ygdR	HB_443 2969156-2969202 -	Score: 5.05
HB_174	Carter et al.	2974207-2974286	+	aas/galR	C0687 2974210-2974368 +
C0687	Tjaden et al.	2974210-2974368	+	aas/galR	HB_174 2974207-2974286 +
IS147	Chen et al.	2982223-2982417	+	kduI/yqeF
k26	Rivas et al.	2995624	unknown	ygeO/ygeP		Score: 9.41
k31	Rivas et al.	3034304	unknown	prfB/recJ		Score: 7.74
						Overlaps a 5' UTR Resides within an operon
HB_175	Carter et al.	3040394-3040473	+	ygfZ/yqfA		Overlaps a 3' UTR
HB_445	Carter et al.	3040429-3040508	-	ygfZ/yqfA		Overlaps a 3' UTR
C0696	Tjaden et al.	3043939-3044066	-	ygfF/gcvP	HB_447 3044028-3044107 -
HB_447	Carter et al.	3044028-3044107	-	ygfF/gcvP	HB_446 3044068-3044147 -
					C0696 3043939-3044066 -
HB_446	Carter et al.	3044068-3044147	-	ygfF/gcvP	tpe85 3044127
					HB_447 3044028-3044107 -
tpe85	Rivas et al.	3044127	unknown	ygfF/gcvP	HB_446 3044068-3044147 -	Score: 7.44
e5	Rivas et al.	3048689	unknown	gcvT/visC		Score: 10.14
						Overlaps a 5' UTR
IS149	Chen et al.	3048693-3048953	-	gcvT/visC	HB_448 3048738-3048814 -	Overlaps a 5' UTR
HB_448	Carter et al.	3048738-3048814	-	gcvT/visC	IS149 3048693-3048953 -	Overlaps a 5' UTR
IS150	Chen et al.	3054867-3055018	+	ygfA/serA
HB_449	Carter et al.	3054958-3055037	-	ygfA/serA
C0703	Tjaden et al.	3069268-3069464	+	fbaA/pgk
HB_450	Carter et al.	3069319-3069398	-	fbaA/pgk		Resides within an operon
t52	Rivas et al.	3071713	unknown	epd/yggC		Score: 7.12
						Overlaps a 5' UTR
psrA13	Argaman et al.	3079665-3079899	+	tktA/yggG
tpke85	Rivas et al.	3081830	unknown	speB/speA		Score: 9.64
						Experimentally tested Resides within an operon
HB_451	Carter et al.	3085880-3085932	-	metK/galP
k6	Rivas et al.	3087700	unknown	galP/sprT		Score: 14.60
C0712	Tjaden et al.	3096461-3096559	+	yggW/yggM
tpk16	Rivas et al.	3107235	unknown	speC/yqgA		Score: 10.39
C0718	Tjaden et al.	3117508-3117592	+	yghJ/yghK
IS152	Chen et al.	3119392-3119548	+	yghK/glcB
tk15	Rivas et al.	3151442	unknown	metC/yghB		Score: 7.95
						Resides within an operon
pke1	Rivas et al.	3154534	unknown	yqhD/yqhE		Score: 10.95
HB_452	Carter et al.	3154544-3154623	-	yqhD/yqhE
HB_177	Carter et al.	3154573-3154652	+	yqhD/yqhE
C0724	Tjaden et al.	3154691-3154740	-	Not intergenic
HB_453	Carter et al.	3155494-3155573	-	yqhE/yqhG
te14	Rivas et al.	3161499	unknown	plsC/parC		Score: 9.11
IS153	Chen et al.	3161571-3161703	+	plsC/parC
HB_454	Carter et al.	3161651-3161730	-	plsC/parC
IS154	Chen et al.	3181333-3181587	-	ygiE/ribB	HB_455 3181349-3181428 -
HB_455	Carter et al.	3181349-3181428	-	ygiE/ribB	IS154 3181333-3181587 -
HB_457	Carter et al.	3182546-3182625	-	ribB/yqiC	HB_456 3182586-3182665 -	Overlaps a 5' UTR
HB_456	Carter et al.	3182586-3182665	-	ribB/yqiC	HB_457 3182546-3182625 -	Overlaps a 5' UTR
k8	Rivas et al.	3184109	unknown	Not intergenic		Score: 13.91
HB_178	Carter et al.	3192662-3192741	+	yqiK/rfaE	HB_179 3192702-3192781 +
HB_179	Carter et al.	3192702-3192781	+	yqiK/rfaE	HB_180 3192742-3192821 +
					HB_178 3192662-3192741 +
HB_180	Carter et al.	3192742-3192821	+	yqiK/rfaE	HB_179 3192702-3192781 +
p16	Rivas et al.	3208226	unknown	ygjD/rpsU		Score: 8.91
te20	Rivas et al.	3208645	unknown	rpsU/dnaG		Score: 7.94
						Resides within an operon
HB_458	Carter et al.	3220091-3220147	-	ebgR/ebgA
HB_461	Carter et al.	3228976-3229055	-	ygjK/fadH	HB_460 3229016-3229095 -
HB_460	Carter et al.	3229016-3229095	-	ygjK/fadH	HB_461 3228976-3229055 -
C0736	Tjaden et al.	3229118-3229257	-	ygjK/fadH	HB_459 3229176-3229255 -
C0737	Tjaden et al.	3229172-3229264	+	ygjK/fadH
HB_459	Carter et al.	3229176-3229255	-	ygjK/fadH	C0736 3229118-3229257 -
C0738	Tjaden et al.	3232214-3232289	+	ygjN/ygjO	HB_181 3232267-3232346 +
HB_181	Carter et al.	3232267-3232346	+	ygjN/ygjO	C0738 3232214-3232289 +
HB_462	Carter et al.	3232300-3232379	-	ygjN/ygjO
C0740	Tjaden et al.	3237188-3237292	-	ygjT/ygjU	HB_465 3237214-3237293 -
					HB_464 3237254-3237333 -
HB_465	Carter et al.	3237214-3237293	-	ygjT/ygjU	HB_464 3237254-3237333 -
					C0740 3237188-3237292 -
HB_464	Carter et al.	3237254-3237333	-	ygjT/ygjU	HB_463 3237294-3237373 -
					HB_465 3237214-3237293 -
					C0740 3237188-3237292 -
HB_463	Carter et al.	3237294-3237373	-	ygjT/ygjU	HB_464 3237254-3237333 -
HB_183	Carter et al.	3237308-3237387	+	ygjT/ygjU
k17	Rivas et al.	3244180	unknown	exuT/exuR		Score: 11.21
tp50	Rivas et al.	3246466	unknown	yqjB/yqjC		Score: 6.36
pe14	Rivas et al.	3255714	unknown	yhaO/tdcG		Score: 7.10
C0747	Tjaden et al.	3265293-3265331	+	tdcR/yhaB	IS162 3265304-3265429 +
IS162	Chen et al.	3265304-3265429	+	tdcR/yhaB	C0747 3265293-3265331 +
IS163	Chen et al.	3267562-3267742	+	yhaC/yhaD	IS164 3267675-3267855 +
IS164	Chen et al.	3267675-3267855	+	yhaC/yhaD	IS163 3267562-3267742 +
p19	Rivas et al.	3274496	unknown	yhaG/sohA		Score: 8.20
tp31	Rivas et al.	3301012	unknown	yhbV/yhbW		Score: 9.75
t75	Rivas et al.	3303464	unknown	mtr/deaD		Score: 5.14
C0751	Tjaden et al.	3305554-3305679	+	deaD/yhbM
e19	Rivas et al.	3306567	unknown	yhbM/pnp		Score: 5.32
						Resides within an operon
p11	Rivas et al.	3309327	unknown	rpsO/truB		Score: 11.55
						Overlaps a 5' UTR
C0756	Tjaden et al.	3310869-3310897	+	rbfA/infB
C0757	Tjaden et al.	3315732-3315825	-	yhbC/metY
HB_466	Carter et al.	3319593-3319672	-	yhbX/leuU	k23 3319609
k23	Rivas et al.	3319609	unknown	yhbX/leuU	HB_466 3319593-3319672 -	Score: 9.95
te21	Rivas et al.	3325729	unknown	yhbY/greA		Score: 7.02
C0765	Tjaden et al.	3325738-3325824	-	yhbY/greA
HB_468	Carter et al.	3326392-3326433	-	greA/dacB	HB_467 3326394-3326473 -	Overlaps a 5' UTR
HB_467	Carter et al.	3326394-3326473	-	greA/dacB	HB_468 3326392-3326433 -	Overlaps a 5' UTR
tk1	Rivas et al.	3330379	unknown	yhbE/rpmA		Score: 17.89
						Experimentally tested
HB_469	Carter et al.	3332323-3332379	-	ispB/sfsB
tp16	Rivas et al.	3344103	unknown	yhbH/ptsN		Score: 14.79
IS166	Chen et al.	3358366-3358576	-	gltD/gltF
t18	Rivas et al.	3375331	unknown	sspA/rpsI		Score: 12.63
k44	Rivas et al.	3376288	unknown	rplM/yhcM		Score: 6.34
C0779	Tjaden et al.	3376333-3376491	+	rplM/yhcM
HB_470	Carter et al.	3378225-3378287	-	yhcB/degQ
C0781	Tjaden et al.	3381939-3382059	+	mdh/argR
pe16	Rivas et al.	3382141	unknown	mdh/argR		Score: 5.70
C0782	Tjaden et al.	3382808-3382886	-	argR/yhcN
HB_471	Carter et al.	3388098-3388177	-	yhcS/tldD
HB_472	Carter et al.	3389974-3390053	-	tldD/yhdP		Overlaps a 5' UTR
tk9	Rivas et al.	3404907	unknown	accC/yhdT		Score: 12.00
IS167	Chen et al.	3407629-3407776	-	prmA/yhdG
IS168	Chen et al.	3411240-3411490	+	envR/acrE
HB_474	Carter et al.	3420859-3420938	-	yhdZ/rrfF	HB_473 3420899-3420978 -
HB_473	Carter et al.	3420899-3420978	-	yhdZ/rrfF	HB_474 3420859-3420938 -
k4	Rivas et al.	3436082	unknown	Not intergenic		Score: 19.34
						Experimentally tested
C0792	Tjaden et al.	3436196-3436292	+	Not intergenic
tp15	Rivas et al.	3437153	unknown	yhdN/rplQ		Score: 15.03
t8	Rivas et al.	3440110	unknown	rpsM/rpmJ		Score: 18.39
						Experimentally tested Resides within an operon
C0795	Tjaden et al.	3440125-3440240	+	rpsM/rpmJ
tp6	Rivas et al.	3445788	unknown	rplN/rpsQ		Score: 19.62
						Experimentally tested Resides within an operon
tpk14	Rivas et al.	3450909	unknown	rpsJ/pioO		Score: 11.37
						Resides within an operon
IS170	Chen et al.	3467677-3467765	+	yheB/tufA	tpke31 3467732
tpke31	Rivas et al.	3467732	unknown	yheB/tufA	IS170 3467677-3467765 +	Score: 17.66
						Experimentally tested Resides within an operon
t10	Rivas et al.	3468968	unknown	tufA/fusA		Score: 15.42
						Resides within an operon
C0807	Tjaden et al.	3472189-3472298	+	rpsL/yheL	t21 3472191
t21	Rivas et al.	3472191	unknown	rpsL/yheL	C0807 3472189-3472298 +	Score: 12.28
						Experimentally tested Resides within an operon
psrA17	Argaman et al.	3474078-3474144	-	yheO/fkpA	tpk9 3474091	Resides within an operon
tpk9	Rivas et al.	3474091	unknown	yheO/fkpA	psrA17 3474078-3474144 -	Score: 13.84
						Resides within an operon
t32	Rivas et al.	3478807	unknown	yheR/yheS		Score: 9.47
						Overlaps a 5' UTR
HB_185	Carter et al.	3483506-3483585	+	yhfA/crp
HB_475	Carter et al.	3491387-3491437	-	yhfC/nirB
p8	Rivas et al.	3494525	unknown	nirD/nirC		Score: 13.12
C0817	Tjaden et al.	3494742-3494814	-	Not intergenic
HB_477	Carter et al.	3502453-3502532	-	yhfR/yhfS	HB_476 3502493-3502572 -
HB_476	Carter et al.	3502493-3502572	-	yhfR/yhfS	HB_477 3502453-3502532 -
HB_186	Carter et al.	3502502-3502572	+	yhfR/yhfS
IS173	Chen et al.	3516932-3517022	-	aroK/hofQ	tp48 3516988	Overlaps a 5' UTR
tp48	Rivas et al.	3516988	unknown	aroK/hofQ	IS173 3516932-3517022 -	Score: 6.56
						Overlaps a 5' UTR
C0826	Tjaden et al.	3534246-3534378	-	ompR/greB
HB_478	Carter et al.	3534927-3534991	-	greB/yhgF	tp37 3534929
tp37	Rivas et al.	3534929	unknown	greB/yhgF	HB_478 3534927-3534991 -	Score: 8.68
IS174	Chen et al.	3537428-3537623	-	yhgF/feoA
HB_479	Carter et al.	3540601-3540672	-	yhgG/yhgA
HB_187	Carter et al.	3550157-3550236	+	malP/malT
C0832	Tjaden et al.	3571143-3571363	+	glgB/asd	IS175 3571214-3571405 +
HB_480	Carter et al.	3571208-3571287	-	glgB/asd		Resides within an operon
IS175	Chen et al.	3571214-3571405	+	glgB/asd	C0832 3571143-3571363 +
C0834	Tjaden et al.	3572520-3572616	+	asd/yhgN
C0835	Tjaden et al.	3576479-3576551	+	gntR/yhhW	HB_188 3576488-3576567 +
					HB_189 3576528-3576580 +
HB_188	Carter et al.	3576488-3576567	+	gntR/yhhW	HB_189 3576528-3576580 +
					C0835 3576479-3576551 +
HB_189	Carter et al.	3576528-3576580	+	gntR/yhhW	HB_188 3576488-3576567 +
					C0835 3576479-3576551 +
k40	Rivas et al.	3577279	unknown	yhhW/yhhX		Score: 7.09
						Resides within an operon
HB_190	Carter et al.	3578567-3578646	+	yhhX/yhhY
IS177	Chen et al.	3582038-3582229	-	Not intergenic
IS178	Chen et al.	3590059-3590308	+	ugpB/livF
IS179	Chen et al.	3595386-3595485	-	livK/yhhK
IS180	Chen et al.	3596063-3596191	+	yhhK/livJ
tp53	Rivas et al.	3597348	unknown	livJ/rpoH		Score: 5.57
C0840	Tjaden et al.	3598435-3598507	+	rpoH/ftsX	tpe86 3598462
tpe86	Rivas et al.	3598462	unknown	rpoH/ftsX	C0840 3598435-3598507 +	Score: 7.30
						Overlaps a 5' UTR
HB_191	Carter et al.	3598585-3598658	+	rpoH/ftsX
tk2	Rivas et al.	3604015	unknown	yhhN/zntA		Score: 16.69
HB_192	Carter et al.	3606281-3606360	+	zntA/sirA	HB_193 3606321-3606381 +	Overlaps a 3' UTR
HB_193	Carter et al.	3606321-3606381	+	zntA/sirA	HB_192 3606281-3606360 +	Overlaps a 3' UTR
HB_481	Carter et al.	3616621-3616692	-	yhhG/rhsB
IS181	Chen et al.	3633531-3633749	-	yhiM/yhiN
C0846	Tjaden et al.	3635080-3635116	-	yhiN/pitA
HB_194	Carter et al.	3637601-3637680	+	uspB/uspA		Overlaps a 5' UTR
C0850	Tjaden et al.	3645316-3645610	-	gor/arsR
C0851	Tjaden et al.	3645700-3645859	+	gor/arsR
HB_482	Carter et al.	3645948-3646027	-	gor/arsR
C0853	Tjaden et al.	3652278-3652310	-	slp/yhiF
HB_483	Carter et al.	3655198-3655265	-	hdeD/yhiE	C0857 3655198-3655608 -
C0857	Tjaden et al.	3655198-3655608	-	hdeD/yhiE	IS182 3655606-3655816 -
					HB_483 3655198-3655265 -
IS182	Chen et al.	3655606-3655816	-	hdeD/yhiE	C0857 3655198-3655608 -
HB_195	Carter et al.	3661398-3661477	+	yhiV/yhiW	C0861 3661470-3661506 +
C0861	Tjaden et al.	3661470-3661506	+	yhiV/yhiW	HB_195 3661398-3661477 +
HB_485	Carter et al.	3662496-3662575	-	yhiW/yhiX	HB_484 3662536-3662615 -	Overlaps a 5' UTR
HB_484	Carter et al.	3662536-3662615	-	yhiW/yhiX	HB_485 3662496-3662575 -
IS184	Chen et al.	3663678-3663803	+	yhiX/gadA
C0865	Tjaden et al.	3673739-3673901	-	yhjE/yhjG
tp46	Rivas et al.	3679595	unknown	yhjJ/dctA		Score: 6.96
HB_196	Carter et al.	3679661-3679740	+	yhjJ/dctA
HB_197	Carter et al.	3679741-3679790	+	yhjJ/dctA
HB_489	Carter et al.	3697542-3697621	-	yhjU/yhjV	HB_488 3697582-3697661 -
HB_488	Carter et al.	3697582-3697661	-	yhjU/yhjV	HB_489 3697542-3697621 -
C0868	Tjaden et al.	3697742-3697968	-	yhjU/yhjV	HB_487 3697782-3697861 -
					HB_486 3697822-3697901 -
HB_487	Carter et al.	3697782-3697861	-	yhjU/yhjV	HB_486 3697822-3697901 -
					C0868 3697742-3697968 -
HB_486	Carter et al.	3697822-3697901	-	yhjU/yhjV	HB_487 3697782-3697861 -
					C0868 3697742-3697968 -
HB_198	Carter et al.	3705865-3705944	+	dppA/proK	C0871 3705866-3705915 +
C0871	Tjaden et al.	3705866-3705915	+	dppA/proK	HB_198 3705865-3705944 +
HB_494	Carter et al.	3705925-3706004	-	dppA/proK	HB_493 3705965-3706044 -
HB_493	Carter et al.	3705965-3706044	-	dppA/proK	HB_494 3705925-3706004 -
HB_492	Carter et al.	3706085-3706164	-	dppA/proK	HB_491 3706125-3706204 -
HB_491	Carter et al.	3706125-3706204	-	dppA/proK	HB_490 3706165-3706244 -
					HB_492 3706085-3706164 -
HB_490	Carter et al.	3706165-3706244	-	dppA/proK	HB_491 3706125-3706204 -
HB_199	Carter et al.	3713960-3714039	+	bisC/yiaD
k9	Rivas et al.	3717990	unknown	cspA/yiaZ		Score: 13.73
HB_495	Carter et al.	3719717-3719796	-	yiaZ/glyS	tpke122 3719753
tpke122	Rivas et al.	3719753	unknown	yiaZ/glyS	HB_495 3719717-3719796 -	Score: 7.50
						Experimentally tested
IS186	Chen et al.	3719854-3719951	+	yiaZ/glyS
C0877	Tjaden et al.	3723150-3723337	-	glyQ/yiaH	HB_496 3723226-3723305 -
HB_496	Carter et al.	3723226-3723305	-	glyQ/yiaH	C0877 3723150-3723337 -
C0878	Tjaden et al.	3723282-3723377	+	glyQ/yiaH
C0879	Tjaden et al.	3733817-3733889	+	xylR/bax
C0880	Tjaden et al.	3733853-3733953	-	xylR/bax
HB_497	Carter et al.	3737157-3737203	-	malS/avtA	C0881 3737180-3737284 -
C0881	Tjaden et al.	3737180-3737284	-	malS/avtA	HB_497 3737157-3737203 -
HB_499	Carter et al.	3748412-3748477	-	sgbE/yiaT
HB_498	Carter et al.	3748678-3748757	-	sgbE/yiaT
IS187	Chen et al.	3752243-3752493	+	yiaW/aldB
HB_200	Carter et al.	3766346-3766425	+	Not intergenic
p30	Rivas et al.	3769619	unknown	yibI/mtlA		Score: 5.37
HB_500	Carter et al.	3771822-3771880	-	mtlA/mtlD
tp49	Rivas et al.	3774748	unknown	yibL/lldP		Score: 6.54
HB_503	Carter et al.	3778645-3778711	-	lldD/yibK	HB_502 3778672-3778751 -
HB_502	Carter et al.	3778672-3778751	-	lldD/yibK	HB_501 3778712-3778791 -
					HB_503 3778645-3778711 -
HB_501	Carter et al.	3778712-3778791	-	lldD/yibK	HB_502 3778672-3778751 -
HB_201	Carter et al.	3778725-3778791	+	lldD/yibK		Overlaps a 3' UTR
C0887	Tjaden et al.	3782745-3782849	+	yibN/yibO
C0888	Tjaden et al.	3785732-3785805	-	Not intergenic
t60	Rivas et al.	3787757	unknown	yibD/tdh		Score: 6.68
IS188	Chen et al.	3787768-3787950	+	yibD/tdh
IS189	Chen et al.	3790319-3790421	+	kbl/htrL
tp10	Rivas et al.	3808781	unknown	mutM/rpmG		Score: 16.00
t4	Rivas et al.	3809317	unknown	rpmB/radC		Score: 21.27
						Experimentally tested Resides within an operon
C0894	Tjaden et al.	3809324-3809504	+	rpmB/radC
HB_504	Carter et al.	3809358-3809437	-	rpmB/radC		Resides within an operon
te12	Rivas et al.	3813399	unknown	pyrE/rph		Score: 10.37
HB_505	Carter et al.	3824919-3824966	-	recG/gltS
HB_202	Carter et al.	3834024-3834103	+	selC/yicK
C0898	Tjaden et al.	3838060-3838143	+	nlpA/yicM
e15	Rivas et al.	3844796	unknown	uhpT/uhpC		Score: 6.53
tpe62	Rivas et al.	3850413	unknown	ilvB/ivbL		Score: 10.19
C0899	Tjaden et al.	3850423-3850515	+	ilvB/ivbL
psrA19	Argaman et al.	3850744-3850913	-	ivbL/ysdA
HB_203	Carter et al.	3850746-3850825	+	ivbL/ysdA
HB_204	Carter et al.	3851106-3851185	+	Not intergenic	C0900 3851123-3851297 +
C0900	Tjaden et al.	3851123-3851297	+	Not intergenic	HB_204 3851106-3851185 +
HB_508	Carter et al.	3858816-3858895	-	yidL/glvG	HB_507 3858856-3858935 -
HB_507	Carter et al.	3858856-3858935	-	yidL/glvG	HB_506 3858896-3858975 -
					HB_508 3858816-3858895 -
HB_506	Carter et al.	3858896-3858975	-	yidL/glvG	HB_507 3858856-3858935 -
t63	Rivas et al.	3864532	unknown	ibpB/ibpA		Score: 5.97
						Resides within an operon
HB_205	Carter et al.	3881408-3881487	+	dnaA/rpmH
HB_509	Carter et al.	3881715-3881794	-	dnaA/rpmH
HB_206	Carter et al.	3881768-3881847	+	dnaA/rpmH		Overlaps a 5' UTR
HB_510	Carter et al.	3882482-3882534	-	Not intergenic
C0906	Tjaden et al.	3882582-3882654	-	Not intergenic
k1	Rivas et al.	3903244	unknown	bglF/bglG		Score: 41.61
						Experimentally tested
HB_207	Carter et al.	3906045-3906124	+	pstB/pstA	HB_208 3906085-3906164 +
HB_511	Carter et al.	3906057-3906136	-	pstB/pstA
HB_208	Carter et al.	3906085-3906164	+	pstB/pstA	HB_209 3906125-3906176 +
					HB_207 3906045-3906124 +
HB_209	Carter et al.	3906125-3906176	+	pstB/pstA	HB_208 3906085-3906164 +
IS191	Chen et al.	3912925-3913171	+	glmU/atpC
pe9	Rivas et al.	3924637	unknown	asnC/asnA		Score: 10.10
C0916	Tjaden et al.	3928748-3928841	+	yieN/trkD
HB_210	Carter et al.	3930543-3930622	+	Not intergenic
C0918	Tjaden et al.	3930671-3930743	-	Not intergenic
k12	Rivas et al.	3934798	unknown	rbsB/rbsK		Score: 12.04
HB_211	Carter et al.	3939137-3939216	+	yieP/rrsC
HB_512	Carter et al.	3948044-3948092	-	ilvL/ilvG	cc4_13 3948045
cc4_13	Rivas et al.	3948045	unknown	ilvL/ilvG	HB_512 3948044-3948092 -	Score: 9.68
						Experimentally tested Resides within an operon
k14	Rivas et al.	3951043	unknown	ilvE/ilvD		Score: 11.45
						Resides within an operon
HB_514	Carter et al.	3957067-3957109	-	ilvC/ppiC	HB_513 3957070-3957149 -
HB_513	Carter et al.	3957070-3957149	-	ilvC/ppiC	HB_514 3957067-3957109 -
HB_212	Carter et al.	3957107-3957149	+	ilvC/ppiC
HB_213	Carter et al.	3963706-3963785	+	trxA/rho
C0924	Tjaden et al.	3972116-3972202	-	rffH/rffC
HB_515	Carter et al.	3975362-3975432	-	Not intergenic
e9	Rivas et al.	3980426	unknown	proM/aslB		Score: 8.54
HB_214	Carter et al.	3984231-3984298	+	aslA/hemY
HB_215	Carter et al.	3988451-3988530	+	hemC/cyaA	IS193 3988483-3988583 +	Overlaps a 5' UTR
IS193	Chen et al.	3988483-3988583	+	hemC/cyaA	HB_215 3988451-3988530 +	Overlaps a 5' UTR
HB_516	Carter et al.	3992162-3992241	-	Not intergenic
tpke120	Rivas et al.	3998739	unknown	yigE/corA		Score: 8.69
						Overlaps a 5' UTR
IS194	Chen et al.	3998801-3998946	+	yigE/corA		Overlaps a 5' UTR
HB_517	Carter et al.	3998828-3998907	-	yigE/corA
cc4_14	Rivas et al.	3999042	unknown	Not intergenic		Score: 16.80
						Experimentally tested
k39	Rivas et al.	4003412	unknown	pldA/recQ		Score: 7.11
HB_518	Carter et al.	4005406-4005485	-	Not intergenic
HB_216	Carter et al.	4005462-4005541	+	Not intergenic
HB_519	Carter et al.	4006513-4006565	-	Not intergenic
C0928	Tjaden et al.	4007804-4007912	-	Not intergenic
HB_217	Carter et al.	4008434-4008513	+	Not intergenic
HB_520	Carter et al.	4010513-4010592	-	metR/metE
HB_218	Carter et al.	4025139-4025198	+	ubiB/fadA		Overlaps a 3' UTR
C0934	Tjaden et al.	4028683-4028710	+	fadB/pepQ
HB_219	Carter et al.	4038297-4038376	+	rrfA/mobB	HB_220 4038337-4038416 +
HB_220	Carter et al.	4038337-4038416	+	rrfA/mobB	HB_219 4038297-4038376 +
C0937	Tjaden et al.	4041634-4041725	-	dsbA/yihF
IS196	Chen et al.	4044340-4044455	-	yihG/polA
psrA22	Argaman et al.	4048823-4048916	-	yihA/yihI
HB_521	Carter et al.	4049437-4049488	-	yihI/hemN	p1 4049438
p1	Rivas et al.	4049438	unknown	yihI/hemN	HB_521 4049437-4049488 -	Score: 25.68
						Experimentally tested
C0940	Tjaden et al.	4050998-4051342	-	hemN/glnG
HB_524	Carter et al.	4054045-4054124	-	glnL/glnA	HB_523 4054085-4054164 -	Overlaps a 3' UTR
HB_523	Carter et al.	4054085-4054164	-	glnL/glnA	HB_522 4054125-4054204 -	Overlaps a 3' UTR
					HB_524 4054045-4054124 -
HB_522	Carter et al.	4054125-4054204	-	glnL/glnA	HB_523 4054085-4054164 -	Overlaps a 3' UTR
tpk3	Rivas et al.	4055641	unknown	glnA/typA		Score: 24.68
						Experimentally tested Overlaps a 5’ UTR
C0943	Tjaden et al.	4055836-4055961	+	glnA/typA
IS200	Chen et al.	4076525-4076636	-	yiiD/yiiE
C0945	Tjaden et al.	4077774-4077861	+	yiiF/fdhE	HB_224 4077790-4077869 +
HB_224	Carter et al.	4077790-4077869	+	yiiF/fdhE	C0945 4077774-4077861 +
HB_525	Carter et al.	4077799-4077878	-	yiiF/fdhE		Overlaps a 3' UTR
C0947	Tjaden et al.	4090628-4090697	+	frvA/yiiL
psrA23	Argaman et al.	4098266-4098318	-	rhaT/sodA
C0948	Tjaden et al.	4099036-4099156	-	sodA/kdgT
HB_526	Carter et al.	4103901-4103958	-	cpxP/yiiP	p29 4103904
					C0950 4103905-4103989 -
p29	Rivas et al.	4103904	unknown	cpxP/yiiP	HB_526 4103901-4103958 -	Score: 5.54
C0950	Tjaden et al.	4103905-4103989	-	cpxP/yiiP	HB_526 4103901-4103958 -
IS201	Chen et al.	4106137-4106321	-	pfkA/sbp
te23	Rivas et al.	4112054	unknown	fpr/glpX		Score: 5.38
tp17	Rivas et al.	4113161	unknown	glpX/glpK		Score: 14.22
C0955	Tjaden et al.	4113177-4113291	+	glpX/glpK
t33	Rivas et al.	4117936	unknown	menA/hslU		Score: 9.43
t43	Rivas et al.	4119869	unknown	hslV/ftsN		Score: 8.05
C0959	Tjaden et al.	4125999-4126105	-	metJ/metB
HB_225	Carter et al.	4135328-4135407	+	yijF/gldA
HB_527	Carter et al.	4139779-4139858	-	Not intergenic
HB_226	Carter et al.	4145947-4146026	+	yijO/yijP
HB_227	Carter et al.	4150968-4151047	+	ppc/argE
HB_228	Carter et al.	4160940-4161019	+	trmA/btuB	HB_229 4160980-4161059 +	Overlaps a 5' UTR
HB_229	Carter et al.	4160980-4161059	+	trmA/btuB	HB_228 4160940-4161019 +	Overlaps a 5' UTR
HB_230	Carter et al.	4163945-4164024	+	murI/rrsB
HB_231	Carter et al.	4169416-4169495	+	rrfB/murB	HB_232 4169456-4169535 +
HB_232	Carter et al.	4169456-4169535	+	rrfB/murB	HB_231 4169416-4169495 +
t1	Rivas et al.	4173138	unknown	tyrU/glyT		Score: 26.36
						Experimentally tested
C0966	Tjaden et al.	4173141-4173244	-	tyrU/glyT
C0967	Tjaden et al.	4173437-4173516	-	thrT/tufB
tp4	Rivas et al.	4174709	unknown	tufB/secE		Score: 21.48
						Experimentally tested
IS204	Chen et al.	4174729-4174842	-	tufB/secE
IS205	Chen et al.	4174754-4174918	+	tufB/secE
tpke123	Rivas et al.	4175870	unknown	nusG/rplK		Score: 6.66
						Resides within an operon
HB_233	Carter et al.	4177242-4177321	+	rplA/rplJ		Resides within an operon
C0970	Tjaden et al.	4177248-4177547	-	rplA/rplJ	HB_528 4177364-4177443 -
HB_234	Carter et al.	4177322-4177401	+	rplA/rplJ	HB_235 4177362-4177441 +	Resides within an operon
HB_235	Carter et al.	4177362-4177441	+	rplA/rplJ	HB_234 4177322-4177401 +	Resides within an operon
HB_528	Carter et al.	4177364-4177443	-	rplA/rplJ	C0970 4177248-4177547 -
HB_529	Carter et al.	4178504-4178572	-	rplL/rpoB	C0973 4178555-4178804 -
C0973	Tjaden et al.	4178555-4178804	-	rplL/rpoB	HB_529 4178504-4178572 -
p17	Rivas et al.	4182853	unknown	rpoB/rpoC		Score: 8.83
						Resides within an operon
IS206	Chen et al.	4187977-4188079	+	htrC/thiH
C0976	Tjaden et al.	4188185-4188292	+	htrC/thiH
C0978	Tjaden et al.	4190298-4190385	+	Not intergenic
HB_530	Carter et al.	4197689-4197768	-	yjaG/hupA
HB_236	Carter et al.	4197713-4197792	+	yjaG/hupA		Resides within an operon
HB_531	Carter et al.	4212789-4212846	-	metA/aceB
C0984	Tjaden et al.	4215995-4216167	-	aceA/aceK
tpke51	Rivas et al.	4225092	unknown	metH/yjbB		Score: 13.79
tpke51	Rivas et al.	4225207	unknown	metH/yjbB		Score: 15.79
						Experimentally tested Overlaps a 5’ UTR
HB_237	Carter et al.	4228806-4228885	+	yjbC/yjbD	HB_238 4228846-4228925 +
HB_238	Carter et al.	4228846-4228925	+	yjbC/yjbD	HB_237 4228806-4228885 +
HB_535	Carter et al.	4230863-4230926	-	lysC/pgi		Overlaps a 5' UTR
HB_534	Carter et al.	4230927-4231006	-	lysC/pgi	HB_533 4230967-4231046 -	Overlaps a 5' UTR
HB_533	Carter et al.	4230967-4231046	-	lysC/pgi	HB_532 4231007-4231086 -	Overlaps a 5' UTR
					HB_534 4230927-4231006 -
HB_532	Carter et al.	4231007-4231086	-	lysC/pgi	HB_533 4230967-4231046 -	Overlaps a 5' UTR
IS207	Chen et al.	4233138-4233291	-	pgi/yjbE
HB_537	Carter et al.	4237310-4237373	-	yjbH/yjbA	HB_536 4237334-4237413 -
HB_536	Carter et al.	4237334-4237413	-	yjbH/yjbA	C0989 4237392-4237543 -
					HB_537 4237310-4237373 -
C0989	Tjaden et al.	4237392-4237543	-	yjbH/yjbA	HB_536 4237334-4237413 -
HB_239	Carter et al.	4237430-4237509	+	yjbH/yjbA	HB_240 4237470-4237549 +
HB_240	Carter et al.	4237470-4237549	+	yjbH/yjbA	HB_239 4237430-4237509 +
HB_538	Carter et al.	4242728-4242807	-	malF/malE		Resides within an operon
HB_540	Carter et al.	4244193-4244272	-	malE/malK	HB_539 4244233-4244312 -
HB_241	Carter et al.	4244209-4244288	+	malE/malK
HB_539	Carter et al.	4244233-4244312	-	malE/malK	HB_540 4244193-4244272 -
IS208	Chen et al.	4258914-4259193	-	yjbM/yjbN
IS209	Chen et al.	4258973-4259131	+	yjbM/yjbN
tk17	Rivas et al.	4260663	unknown	yjbO/qor		Score: 6.20
t57	Rivas et al.	4277420	unknown	yjcD/yjcE		Score: 6.79
HB_242	Carter et al.	4280785-4280831	+	yjcF/yjcG
C0999	Tjaden et al.	4282864-4282978	+	yjcH/acs
IS211	Chen et al.	4304230-4304455	+	yjcS/alsK
C1002	Tjaden et al.	4310762-4310865	+	rpiR/rpiB
C1003	Tjaden et al.	4311835-4311917	+	rpiB/phnP
HB_243	Carter et al.	4322834-4322875	+	phnC/yjdN
HB_244	Carter et al.	4323370-4323449	+	yjdN/yjdM	HB_245 4323410-4323489 +
HB_245	Carter et al.	4323410-4323489	+	yjdN/yjdM	HB_244 4323370-4323449 +
HB_246	Carter et al.	4323490-4323569	+	yjdN/yjdM	HB_247 4323530-4323609 +
HB_247	Carter et al.	4323530-4323609	+	yjdN/yjdM	HB_246 4323490-4323569 +
HB_248	Carter et al.	4323610-4323689	+	yjdN/yjdM
HB_249	Carter et al.	4323690-4323769	+	yjdN/yjdM	HB_250 4323730-4323809 +
HB_250	Carter et al.	4323730-4323809	+	yjdN/yjdM	HB_249 4323690-4323769 +
HB_251	Carter et al.	4323810-4323889	+	yjdN/yjdM	HB_252 4323850-4323929 +
HB_252	Carter et al.	4323850-4323929	+	yjdN/yjdM	HB_251 4323810-4323889 +
tp40	Rivas et al.	4327822	unknown	yjcZ/proP		Score: 8.12
HB_542	Carter et al.	4327950-4328029	-	yjcZ/proP
HB_253	Carter et al.	4329663-4329742	+	proP/basS		Overlaps a 3' UTR
C1009	Tjaden et al.	4335553-4335728	+	adiY/adiA
C1010	Tjaden et al.	4339207-4339284	-	melR/melA	HB_543 4339279-4339358 -
HB_254	Carter et al.	4339257-4339336	+	melR/melA	tp9 4339324
HB_543	Carter et al.	4339279-4339358	-	melR/melA	tp9 4339324
					C1010 4339207-4339284 -
tp9	Rivas et al.	4339324	unknown	melR/melA	HB_543 4339279-4339358 -	Score: 16.31
					HB_254 4339257-4339336 +
C1011	Tjaden et al.	4346531-4346635	-	dcuB/dcuR
HB_255	Carter et al.	4349936-4350015	+	yjdJ/yjdK
C1012	Tjaden et al.	4350096-4350123	+	yjdJ/yjdK
HB_256	Carter et al.	4350659-4350738	+	yjdO/lysU
k5	Rivas et al.	4353991	unknown	yjdL/cadA		Score: 16.41
IS212	Chen et al.	4359749-4360129	+	cadC/pheU	HB_257 4360043-4360122 +
HB_257	Carter et al.	4360043-4360122	+	cadC/pheU	IS212 4359749-4360129 +
tp20	Rivas et al.	4362936	unknown	cutA/dcuA		Score: 13.50
HB_544	Carter et al.	4368136-4368215	-	yjeH/groS
HB_258	Carter et al.	4368161-4368215	+	yjeH/groS		Overlaps a 5' UTR
tke3	Rivas et al.	4370252	unknown	groL/yjeI		Score: 14.91
IS214	Chen et al.	4371910-4372189	+	yjeJ/yjeK
p15	Rivas et al.	4381201	unknown	yjeA/yjeM		Score: 9.38
C1023	Tjaden et al.	4397780-4397851	-	miaA/hfq
C1027	Tjaden et al.	4399532-4399609	-	hflX/hflK
te8	Rivas et al.	4401885	unknown	hflC/yjeT		Score: 11.59
p2	Rivas et al.	4403566	unknown	purA/yjeB		Score: 24.15
						Experimentally tested Resides within an operon
C1029	Tjaden et al.	4406683-4406845	-	rnr/yjfH
t19	Rivas et al.	4407596	unknown	yjfH/yjfI		Score: 12.50
p28	Rivas et al.	4421969	unknown	sgaE/yjfY		Score: 5.58
IS215	Chen et al.	4425099-4425233	+	yjfZ/ytfA
C1035	Tjaden et al.	4432089-4432180	-	ytfH/cpdB
C1036	Tjaden et al.	4432093-4432177	+	ytfH/cpdB
e1	Rivas et al.	4437372	unknown	ytfK/ytfL		Score: 16.84
HB_259	Carter et al.	4448496-4448575	+	ytfQ/ytfR		Resides within an operon
C1042	Tjaden et al.	4448591-4448625	-	ytfQ/ytfR
HB_260	Carter et al.	4456926-4457005	+	pmbA/cybC	HB_261 4456966-4457045 +	Resides within an operon
HB_261	Carter et al.	4456966-4457045	+	pmbA/cybC	HB_260 4456926-4457005 +	Resides within an operon
C1046	Tjaden et al.	4456999-4457124	-	Not intergenic
C1048	Tjaden et al.	4457950-4458034	+	nrdG/nrdD
C1051	Tjaden et al.	4464974-4465173	+	treR/mgtA	t34 4465014
HB_546	Carter et al.	4464989-4465068	-	treR/mgtA	t34 4465014
t34	Rivas et al.	4465014	unknown	treR/mgtA	HB_546 4464989-4465068 -	Score: 9.32
					C1051 4464974-4465173 +
HB_545	Carter et al.	4465069-4465148	-	treR/mgtA
IS217	Chen et al.	4485969-4486075	-	yjgQ/yjgR		Overlaps a 3' UTR
HB_262	Carter et al.	4495669-4495744	+	intB/yjgX
C1061	Tjaden et al.	4498468-4498595	-	yjgX/yjgZ	HB_548 4498538-4498617 -
HB_548	Carter et al.	4498538-4498617	-	yjgX/yjgZ	C1061 4498468-4498595 -
HB_547	Carter et al.	4498658-4498737	-	yjgX/yjgZ
HB_263	Carter et al.	4499158-4499237	+	yjgZ/yjhB	HB_264 4499198-4499277 +
HB_264	Carter et al.	4499198-4499277	+	yjgZ/yjhB	HB_263 4499158-4499237 +
HB_550	Carter et al.	4499271-4499350	-	yjgZ/yjhB	HB_549 4499311-4499390 -
HB_549	Carter et al.	4499311-4499390	-	yjgZ/yjhB	HB_550 4499271-4499350 -
C1062	Tjaden et al.	4499430-4499669	+	yjgZ/yjhB
IS219	Chen et al.	4501193-4501457	+	yjgZ/yjhB
HB_552	Carter et al.	4506276-4506355	-	yjhE/fecE	HB_551 4506316-4506395 -
HB_265	Carter et al.	4506316-4506395	+	yjhE/fecE
HB_551	Carter et al.	4506316-4506395	-	yjhE/fecE	HB_552 4506276-4506355 -
HB_266	Carter et al.	4507123-4507202	+	yjhE/fecE
HB_554	Carter et al.	4508138-4508217	-	yjhE/fecE	HB_553 4508178-4508257 -
HB_553	Carter et al.	4508178-4508257	-	yjhE/fecE	HB_554 4508138-4508217 -
HB_267	Carter et al.	4516371-4516450	+	fecI/yjhU	HB_268 4516411-4516490 +
HB_268	Carter et al.	4516411-4516490	+	fecI/yjhU	HB_269 4516451-4516530 +
					HB_267 4516371-4516450 +
HB_269	Carter et al.	4516451-4516530	+	fecI/yjhU	HB_270 4516491-4516570 +
					HB_268 4516411-4516490 +
HB_270	Carter et al.	4516491-4516570	+	fecI/yjhU	HB_271 4516531-4516610 +
					HB_269 4516451-4516530 +
HB_271	Carter et al.	4516531-4516610	+	fecI/yjhU	HB_272 4516571-4516650 +
					HB_270 4516491-4516570 +
HB_272	Carter et al.	4516571-4516650	+	fecI/yjhU	HB_271 4516531-4516610 +
HB_555	Carter et al.	4517759-4517838	-	Not intergenic
HB_273	Carter et al.	4518157-4518236	+	yjhU/yjhF	C1066 4518187-4518237 +
					HB_274 4518197-4518238 +
C1066	Tjaden et al.	4518187-4518237	+	yjhU/yjhF	HB_274 4518197-4518238 +
					HB_273 4518157-4518236 +
HB_274	Carter et al.	4518197-4518238	+	yjhU/yjhF	C1066 4518187-4518237 +
					HB_273 4518157-4518236 +
t7	Rivas et al.	4525553	unknown	sgcA/sgcQ		Score: 19.11
						Experimentally tested
HB_275	Carter et al.	4527862-4527941	+	Not intergenic
HB_558	Carter et al.	4529445-4529524	-	sgcX/yjhP	HB_557 4529485-4529564 -
					C1067 4529503-4529584 -
HB_557	Carter et al.	4529485-4529564	-	sgcX/yjhP	C1067 4529503-4529584 -
					HB_558 4529445-4529524 -
C1067	Tjaden et al.	4529503-4529584	-	sgcX/yjhP	HB_557 4529485-4529564 -
					HB_558 4529445-4529524 -
HB_556	Carter et al.	4529685-4529764	-	sgcX/yjhP
C1068	Tjaden et al.	4529766-4529862	+	sgcX/yjhP
tpke10	Rivas et al.	4531359	unknown	yjhQ/yjhR		Score: 18.64
						Experimentally tested
IS220	Chen et al.	4531472-4531746	+	yjhQ/yjhR	HB_276 4531483-4531562 +
					tpke10 4531556
HB_276	Carter et al.	4531483-4531562	+	yjhQ/yjhR	tpke10 4531556
					IS220 4531472-4531746 +
tpke10	Rivas et al.	4531556	unknown	yjhQ/yjhR	HB_276 4531483-4531562 +	Score: 19.66
					IS220 4531472-4531746 +	Experimentally tested
C1069	Tjaden et al.	4531631-4531703	-	yjhQ/yjhR
C1070	Tjaden et al.	4532142-4532310	+	yjhQ/yjhR
HB_277	Carter et al.	4532323-4532402	+	yjhQ/yjhR
IS221	Chen et al.	4532323-4532459	-	yjhQ/yjhR
IS222	Chen et al.	4539345-4539532	+	fimB/fimE
C1073	Tjaden et al.	4540582-4540669	-	fimE/fimA
HB_560	Carter et al.	4547362-4547441	-	fimH/gntP	HB_559 4547402-4547481 -
HB_559	Carter et al.	4547402-4547481	-	fimH/gntP	HB_560 4547362-4547441 -
C1075	Tjaden et al.	4549106-4549179	+	gntP/uxuA
IS223	Chen et al.	4554070-4554182	+	yjiC/yjiD
C1077	Tjaden et al.	4561419-4561465	-	yjiK/yjiL
pe4	Rivas et al.	4566122	unknown	yjiO/yjiP		Score: 11.58
C1078	Tjaden et al.	4566160-4566320	-	yjiO/yjiP	IS224 4566199-4566339 -
IS224	Chen et al.	4566199-4566339	-	yjiO/yjiP	C1078 4566160-4566320 -
HB_278	Carter et al.	4566379-4566458	+	yjiO/yjiP
C1079	Tjaden et al.	4567632-4567706	+	yjiP/yjiR
IS225	Chen et al.	4569550-4569682	+	yjiS/yjiT
HB_279	Carter et al.	4576976-4577055	+	mcrB/yjiW	HB_280 4577016-4577068 +
HB_280	Carter et al.	4577016-4577068	+	mcrB/yjiW	HB_279 4576976-4577055 +
C1080	Tjaden et al.	4577573-4577632	+	yjiW/hsdS
HB_281	Carter et al.	4580709-4580788	+	hsdM/hsdR
C1082	Tjaden et al.	4589126-4589201	-	yjiY/tsr
C1083	Tjaden et al.	4593357-4593440	-	yjjM/yjjN
HB_282	Carter et al.	4594662-4594718	+	yjjN/mdoB
HB_283	Carter et al.	4597182-4597261	+	mdoB/yjjA
HB_284	Carter et al.	4603363-4603442	+	Not intergenic
C1087	Tjaden et al.	4603371-4603606	-	Not intergenic
C1088	Tjaden et al.	4603993-4604236	+	leuQ/rsmC	HB_285 4604101-4604180 +
					HB_286 4604141-4604220 +
HB_285	Carter et al.	4604101-4604180	+	leuQ/rsmC	HB_286 4604141-4604220 +
					C1088 4603993-4604236 +
HB_286	Carter et al.	4604141-4604220	+	leuQ/rsmC	HB_285 4604101-4604180 +
					C1088 4603993-4604236 +
HB_561	Carter et al.	4608573-4608634	-	prfC/osmY	t13 4608582
t13	Rivas et al.	4608582	unknown	prfC/osmY	HB_561 4608573-4608634 -	Score: 13.98
C1090	Tjaden et al.	4608861-4608963	-	prfC/osmY
HB_562	Carter et al.	4609571-4609609	-	osmY/yjjU	tpe80 4609572
tpe80	Rivas et al.	4609572	unknown	osmY/yjjU	HB_562 4609571-4609609 -	Score: 8.46
HB_563	Carter et al.	4611064-4611143	-	Not intergenic
IS227	Chen et al.	4611908-4612011	+	yjjV/yjjW
C1099	Tjaden et al.	4632964-4633003	+	rob/creA
C1102	Tjaden et al.	4638131-4638203	-	yjjY/lasT

^aThe names appear as given by the groups that predicted the candidates. Carter et al. did not name the candidates, and therefore the candidates were numbered (HB_1 – HB_563).

^bLocation on the genome of Escherichia coli in bases.

^cFor candidates given by Rivas et al. there is no predicted strand.

^dAccording to the annotation from the Colibri database. Candidates that according to this annotation overlap an open reading frame either on the same strand or on the opposite strand are marked as “Not intergenic”.

^eCandidates were considered overlapping only when both were located on the same strand. For Rivas et al. candidates, for which no strand was assigned, an overlap may indicate location on the same strand or on the opposite strand.

^fThe log-odds score given by Rivas et al. is indicated.

^gInformation regarding a transcript being a part of an operon, a 5’ UTR or a 3’ UTR was extracted from the study conducted by Tjaden et al. (2002, Nucleic Acids Research, 30:3732-3738).