sRNA

Table 3 Conservation of the sRNA adjacent genes (E-value < 1.0)

sRNA	Adjacent gene	Length of adjacent gene	Conserved in	E-value	Length of conserved region	Percent identity
sraB	yceF	194	Shigella_flexneri_2a	1.00E-111	193	100
sraB	yceF	194	Escherichia_coli_O157H7_EDL933	1.00E-110	193	99
sraB	yceF	194	Escherichia_coli_O157H7	1.00E-109	193	99
sraB	yceF	194	Salmonella_typhimurium_LT2	3.00E-97	191	88
sraB	yceF	194	Salmonella_typhi	5.00E-96	191	87
sraB	yceD	173	Escherichia_coli_O157H7_EDL933	4.00E-88	172	91
sraB	yceD	173	Escherichia_coli_O157H7	4.00E-88	172	91
sraB	yceD	173	Shigella_flexneri_2a	1.00E-87	172	90
sraB	yceD	173	Salmonella_typhimurium_LT2	2.00E-84	172	87
sraB	yceD	173	Salmonella_typhi	2.00E-84	172	87
sraC	pphA	218	Escherichia_coli_O157H7_EDL933	1.00E-132	217	99
sraC	pphA	218	Escherichia_coli_O157H7	1.00E-132	217	99
sraC	pphA	218	Escherichia_coli_CFT073	1.00E-131	217	98
sraC	yebY	113	Shigella_flexneri_2a	4.00E-53	112	87
sraC	yebY	113	Escherichia_coli_O157H7_EDL933	2.00E-52	112	85
sraC	yebY	113	Escherichia_coli_O157H7	2.00E-52	112	85
sraC	yebY	113	Yersinia_pestis_KIM	3.00E-30	90	64
sraC	yebY	113	Yersinia_pestis_CO92	3.00E-30	90	64
sraD	ygaG	171	Escherichia_coli_CFT073	2.00E-98	170	99
sraD	ygaG	171	Shigella_flexneri_2a	3.00E-98	170	99
sraD	ygaG	171	Escherichia_coli_O157H7_EDL933	3.00E-98	170	99
sraD	ygaG	171	Escherichia_coli_O157H7	3.00E-98	170	99
sraD	ygaG	171	Salmonella_typhimurium_LT2	2.00E-94	170	94
sraD	ygaG	171	Salmonella_typhi	2.00E-93	170	94
sraD	ygaG	171	Yersinia_pestis_KIM	3.00E-87	170	88
sraD	ygaG	171	Yersinia_pestis_CO92	3.00E-87	170	88
sraD	gshA	518	Escherichia_coli_CFT073	0	517	94
sraD	gshA	518	Escherichia_coli_O157H7	0	517	94
sraD	gshA	518	Escherichia_coli_O157H7_EDL933	0	517	94
sraD	gshA	518	Salmonella_typhimurium_LT2	0	517	88
sraD	gshA	518	Salmonella_typhi	0	517	88
sraD	gshA	518	Shigella_flexneri_2a	0	442	93
sraD	gshA	518	Yersinia_pestis_KIM	0	470	76
sraD	gshA	518	Yersinia_pestis_CO92	0	470	76
gcvB	gcvA	305	Escherichia_coli_O157H7_EDL933	1.00E-174	304	100
gcvB	gcvA	305	Escherichia_coli_O157H7	1.00E-174	304	100
gcvB	gcvA	305	Escherichia_coli_CFT073	1.00E-174	304	100
gcvB	gcvA	305	Shigella_flexneri_2a	1.00E-174	304	100
gcvB	gcvA	305	Salmonella_typhimurium_LT2	1.00E-171	304	98
gcvB	gcvA	305	Salmonella_typhi	1.00E-171	304	98
gcvB	gcvA	305	Yersinia_pestis_KIM	1.00E-155	303	88
gcvB	gcvA	305	Yersinia_pestis_CO92	1.00E-155	303	88
gcvB	ygdI	75	Escherichia_coli_O157H7	3.00E-40	74	100
gcvB	ygdI	75	Escherichia_coli_CFT073	3.00E-40	74	100
gcvB	ygdI	75	Shigella_flexneri_2a	4.00E-39	74	97
gcvB	ygdI	75	Escherichia_coli_O157H7_EDL933	2.00E-38	74	96
gcvB	ygdI	75	Salmonella_typhimurium_LT2	4.00E-37	73	93
gcvB	ygdI	75	Salmonella_typhi	4.00E-37	73	93
gcvB	ygdI	75	Yersinia_pestis_KIM	4.00E-06	51	34
sraE	aas	719	Shigella_flexneri_2a	0	718	98
sraE	aas	719	Escherichia_coli_O157H7	0	718	98
sraE	aas	719	Escherichia_coli_CFT073	0	718	98
sraE	aas	719	Escherichia_coli_O157H7_EDL933	0	718	98
sraE	aas	719	Salmonella_typhimurium_LT2	0	718	90
sraE	galR	343	Escherichia_coli_O157H7_EDL933	0	342	97
sraE	galR	343	Escherichia_coli_O157H7	0	342	97
sraE	galR	343	Shigella_flexneri_2a	0	342	97
sraE	galR	343	Salmonella_typhimurium_LT2	1.00E-174	342	88
sraE	galR	343	Salmonella_typhi	1.00E-174	342	88
sraF	ygjR	328	Shigella_flexneri_2a	0	327	99
sraF	ygjR	328	Escherichia_coli_CFT073	0	327	99
sraF	ygjR	328	Escherichia_coli_O157H7_EDL933	0	327	98
sraF	ygjR	328	Escherichia_coli_O157H7	0	327	98
sraF	ygjR	328	Salmonella_typhimurium_LT2	1.00E-159	325	83
sraF	ygjR	328	Salmonella_typhi	1.00E-159	325	83
sraF	ygjT	321	Shigella_flexneri_2a	1.00E-177	319	98
sraF	ygjT	321	Escherichia_coli_O157H7_EDL933	1.00E-176	320	97
sraF	ygjT	321	Escherichia_coli_O157H7	1.00E-176	320	97
sraF	ygjT	321	Escherichia_coli_CFT073	1.00E-176	318	97
sraF	ygjT	321	Salmonella_typhimurium_LT2	1.00E-161	317	87
sraF	ygjT	321	Salmonella_typhi	1.00E-161	317	87
sraG	pnp	711	Escherichia_coli_O157H7	0	689	93
sraG	pnp	711	Shigella_flexneri_2a	0	689	93
sraG	pnp	711	Escherichia_coli_CFT073	0	689	93
sraG	pnp	711	Escherichia_coli_O157H7_EDL933	0	689	93
sraG	pnp	711	Salmonella_typhimurium_LT2	0	689	91
sraG	pnp	711	Salmonella_typhi	0	689	91
sraG	pnp	711	Yersinia_pestis_KIM	0	689	83
sraG	pnp	711	Yersinia_pestis_CO92	0	689	83
sraG	rpsO	89	Shigella_flexneri_2a	6.00E-47	88	100
sraG	rpsO	89	Escherichia_coli_CFT073	6.00E-47	88	100
sraG	rpsO	89	Escherichia_coli_O157H7_EDL933	2.00E-46	88	99
sraG	rpsO	89	Escherichia_coli_O157H7	2.00E-46	88	99
sraG	rpsO	89	Salmonella_typhimurium_LT2	6.00E-46	88	98
sraG	rpsO	89	Salmonella_typhi	6.00E-46	88	98
sraH	elbB	217	Shigella_flexneri_2a	1.00E-113	216	94
sraH	elbB	217	Escherichia_coli_CFT073	1.00E-113	216	94
sraH	elbB	217	Escherichia_coli_O157H7_EDL933	1.00E-113	216	94
sraH	elbB	217	Escherichia_coli_O157H7	1.00E-113	216	94
sraH	elbB	217	Salmonella_typhimurium_LT2	1.00E-104	216	86
sraH	elbB	217	Salmonella_typhi	1.00E-104	216	85
sraH	elbB	217	Yersinia_pestis_KIM	8.00E-75	216	60
sraH	arcB	776	Shigella_flexneri_2a	0	775	96
sraH	arcB	776	Escherichia_coli_O157H7	0	775	96
sraH	arcB	776	Escherichia_coli_O157H7_EDL933	0	775	96
sraH	arcB	776	Escherichia_coli_CFT073	0	775	96
sraH	arcB	776	Salmonella_typhimurium_LT2	0	775	90
sraH	arcB	776	Salmonella_typhi	0	775	90
sraH	arcB	776	Yersinia_pestis_KIM	0	775	73
sraI	yhhX	345	Escherichia_coli_O157H7_EDL933	0	344	99
sraI	yhhX	345	Escherichia_coli_O157H7	0	344	99
sraI	yhhX	345	Salmonella_typhimurium_LT2	0	344	92
sraI	yhhX	345	Salmonella_typhi	0	344	92
sraI	yhhX	345	Shigella_flexneri_2a	1.00E-165	284	100
sraI	yhhX	345	Escherichia_coli_CFT073	8.00E-06	17	100
sraI	yhhY	162	Shigella_flexneri_2a	1.00E-94	161	99
sraI	yhhY	162	Escherichia_coli_O157H7	2.00E-92	161	98
sraI	yhhY	162	Escherichia_coli_O157H7_EDL933	2.00E-90	157	97
sraI	yhhY	162	Salmonella_typhimurium_LT2	1.00E-77	161	82
sraI	yhhY	162	Salmonella_typhi	2.00E-77	161	81
sraJ	aslA	551	Escherichia_coli_O157H7	0	550	90
sraJ	aslA	551	Escherichia_coli_O157H7_EDL933	0	550	90
sraJ	hemY	398	Shigella_flexneri_2a	0	379	93
sraJ	hemY	398	Escherichia_coli_O157H7_EDL933	0	379	93
sraJ	hemY	398	Escherichia_coli_O157H7	0	379	93
sraJ	hemY	398	Escherichia_coli_CFT073	0	379	93
sraJ	hemY	398	Salmonella_typhimurium_LT2	0	379	89
sraJ	hemY	398	Salmonella_typhi	0	379	89
sraK	yihA	210	Escherichia_coli_O157H7	1.00E-117	209	100
sraK	yihA	210	Shigella_flexneri_2a	1.00E-117	209	100
sraK	yihA	210	Yersinia_pestis_KIM	8.00E-95	209	81
sraK	yihA	210	Yersinia_pestis_CO92	8.00E-95	209	81
sraK	yihI	169	Shigella_flexneri_2a	7.00E-70	168	79
sraK	yihI	169	Escherichia_coli_O157H7_EDL933	5.00E-66	168	76
sraK	yihI	169	Escherichia_coli_O157H7	5.00E-66	168	76
sraK	yihI	169	Yersinia_pestis_KIM	5.00E-23	142	39
sraK	yihI	169	Yersinia_pestis_CO92	5.00E-23	142	39
sraL	soxR	154	Shigella_flexneri_2a	5.00E-87	153	100
sraL	soxR	154	Escherichia_coli_O157H7_EDL933	5.00E-87	153	100
sraL	soxR	154	Escherichia_coli_O157H7	5.00E-87	153	100
sraL	soxR	154	Escherichia_coli_CFT073	4.00E-86	153	99
sraL	soxR	154	Salmonella_typhimurium_LT2	2.00E-83	151	96
sraL	soxR	154	Salmonella_typhi	2.00E-83	151	96
sraL	yjcD	449	Escherichia_coli_O157H7_EDL933	0	448	87
sraL	yjcD	449	Escherichia_coli_O157H7	0	448	87
sraL	yjcD	449	Shigella_flexneri_2a	0	448	87
sraL	yjcD	449	Escherichia_coli_CFT073	2.00E-13	32	100
dsrA	yedP	271	Escherichia_coli_O157H7_EDL933	1.00E-157	270	99
dsrA	yedP	271	Escherichia_coli_O157H7	1.00E-157	270	99
dsrA	yedP	271	Escherichia_coli_CFT073	1.00E-153	270	96
dsrA	yedP	271	Salmonella_typhimurium_LT2	1.00E-122	268	75
dsrA	yedP	271	Salmonella_typhi	1.00E-122	268	75
ssrA	smpB	160	Shigella_flexneri_2a	2.00E-91	159	100
ssrA	smpB	160	Escherichia_coli_O157H7	2.00E-91	159	100
ssrA	smpB	160	Escherichia_coli_CFT073	2.00E-91	159	100
ssrA	smpB	160	Escherichia_coli_O157H7_EDL933	6.00E-91	159	99
ssrA	smpB	160	Yersinia_pestis_KIM	2.00E-78	159	85
ssrA	smpB	160	Yersinia_pestis_CO92	2.00E-78	159	85
ssrA	smpB	160	Vibrio_cholerae	6.00E-63	160	69
ssrA	smpB	160	Shewanella_oneidensis	4.00E-54	155	61
ssrA	smpB	160	Wigglesworthia_brevipalpis	5.00E-36	153	45
ssrA	intA	413	Shigella_flexneri_2a	0	412	84
ssrA	intA	413	Vibrio_cholerae	2e-67	409	53
oxyS	argH	457	Escherichia_coli_O157H7_EDL933	0	456	92
oxyS	argH	457	Escherichia_coli_O157H7	0	456	92
oxyS	argH	457	Salmonella_typhimurium_LT2	0	455	89
oxyS	argH	457	Salmonella_typhi	0	441	92
oxyS	oxyR	305	Escherichia_coli_O157H7_EDL933	1.00E-177	304	100
oxyS	oxyR	305	Escherichia_coli_O157H7	1.00E-177	304	100
oxyS	oxyR	305	Escherichia_coli_CFT073	1.00E-177	304	100
oxyS	oxyR	305	Shigella_flexneri_2a	1.00E-174	304	99
oxyS	oxyR	305	Salmonella_typhimurium_LT2	1.00E-169	304	96
oxyS	oxyR	305	Salmonella_typhi	1.00E-169	304	96
spf	polA	928	Escherichia_coli_O157H7_EDL933	0	927	93
spf	polA	928	Escherichia_coli_O157H7	0	927	93
spf	polA	928	Shigella_flexneri_2a	0	927	93
spf	polA	928	Salmonella_typhi	0	927	88
spf	polA	928	Yersinia_pestis_KIM	0	927	73
spf	polA	928	Yersinia_pestis_CO92	0	927	73
spf	yihA	210	Escherichia_coli_O157H7	1.00E-117	209	100
spf	yihA	210	Shigella_flexneri_2a	1.00E-117	209	100
spf	yihA	210	Salmonella_typhi	1.00E-112	209	95
spf	yihA	210	Escherichia_coli_O157H7_EDL933	1.00E-110	198	99
spf	yihA	210	Shewanella_oneidensis	2.00E-66	194	62
rprA	ydiK	370	Shigella_flexneri_2a	1.00E-173	369	83
rprA	ydiK	370	Escherichia_coli_O157H7_EDL933	1.00E-173	369	83
rprA	ydiK	370	Escherichia_coli_O157H7	1.00E-173	369	83
rprA	ydiK	370	Escherichia_coli_CFT073	1.00E-172	369	82
rprA	ydiK	370	Salmonella_typhimurium_LT2	1.00E-158	354	76
rprA	ydiK	370	Salmonella_typhi	1.00E-157	354	75
rprA	ydiK	370	Yersinia_pestis_CO92	1.00E-110	344	53
rprA	ydiK	370	Yersinia_pestis_KIM	1.00E-110	344	53
rprA	ydiL	65	Shigella_flexneri_2a	2.00E-35	64	98
rprA	ydiL	65	Escherichia_coli_O157H7_EDL933	2.00E-35	64	98
rprA	ydiL	65	Escherichia_coli_O157H7	2.00E-35	64	98
rprA	ydiL	65	Escherichia_coli_CFT073	2.00E-35	64	98
rprA	ydiL	65	Salmonella_typhimurium_LT2	3.00E-26	64	69
csrB	yqcC	109	Escherichia_coli_O157H7_EDL933	9.00E-54	108	86
csrB	yqcC	109	Escherichia_coli_O157H7	9.00E-54	108	86
csrB	yqcC	109	Escherichia_coli_CFT073	2.00E-53	108	86
csrB	yqcC	109	Shigella_flexneri_2a	6.00E-53	108	85
csrB	yqcC	109	Salmonella_typhimurium_LT2	4.00E-43	108	72
csrB	yqcC	109	Salmonella_typhi	3.00E-42	108	72
csrB	syd	181	Escherichia_coli_CFT073	1.00E-106	180	100
csrB	syd	181	Escherichia_coli_O157H7_EDL933	1.00E-105	180	99
csrB	syd	181	Escherichia_coli_O157H7	1.00E-105	180	99
csrB	syd	181	Shigella_flexneri_2a	1.00E-105	180	99
csrB	syd	181	Salmonella_typhimurium_LT2	3.00E-88	180	85
csrB	syd	181	Salmonella_typhi	3.00E-88	180	85
csrB	syd	181	Yersinia_pestis_KIM	9.00E-57	173	57
csrB	syd	181	Yersinia_pestis_CO92	9.00E-57	173	57
micF	ompC	367	Escherichia_coli_O157H7_EDL933	0	342	94
micF	ompC	367	Escherichia_coli_O157H7	0	342	94
micF	ompC	367	Shigella_flexneri_2a	0	342	92
micF	ompC	367	Escherichia_coli_CFT073	0	342	90
micF	ompC	367	Salmonella_typhimurium_LT2	1.00E-162	342	78
micF	ompC	367	Salmonella_typhi	1.00E-162	342	78
micF	yojN	890	Escherichia_coli_O157H7_EDL933	0	889	93
micF	yojN	890	Escherichia_coli_O157H7	0	889	93
micF	yojN	890	Escherichia_coli_CFT073	0	889	92
micF	yojN	890	Shigella_flexneri_2a	0	889	92
micF	yojN	890	Salmonella_typhimurium_LT2	0	889	79
micF	yojN	890	Salmonella_typhi	0	889	79
ffs	ybaZ	129	Shigella_flexneri_2a	2.00E-73	128	100
ffs	ybaZ	129	Escherichia_coli_CFT073	1.00E-72	128	99
ffs	ybaZ	129	Escherichia_coli_O157H7	2.00E-72	128	99
ffs	ybaZ	129	Escherichia_coli_O157H7_EDL933	5.00E-69	122	99
ffs	ybaZ	129	Salmonella_typhimurium_LT2	1.00E-59	128	83
ffs	ybaZ	129	Salmonella_typhi	1.00E-59	128	83
ffs	ybaZ	129	Yersinia_pestis_KIM	1.00E-38	114	63
ffs	ybaZ	129	Yersinia_pestis_CO92	1.00E-38	114	63
ffs	ybaA	117	Shigella_flexneri_2a	7.00E-66	116	100
ffs	ybaA	117	Escherichia_coli_O157H7_EDL933	7.00E-66	116	100
ffs	ybaA	117	Escherichia_coli_O157H7	7.00E-66	116	100
ffs	ybaA	117	Escherichia_coli_CFT073	7.00E-66	116	100
rnpB	yhaC	395	Escherichia_coli_O157H7	0	394	87
rnpB	yhaD	381	Escherichia_coli_O157H7_EDL933	0	380	95
rnpB	yhaD	381	Escherichia_coli_O157H7	0	380	95
rnpB	yhaD	381	Shigella_flexneri_2a	0	380	94
rnpB	yhaD	381	Escherichia_coli_CFT073	0	380	94
rnpB	yhaD	381	Salmonella_typhimurium_LT2	1.00E-177	380	82
rnpB	yhaD	381	Salmonella_typhi	1.00E-176	380	82
ssrS	ygfE	109	Escherichia_coli_O157H7_EDL933	8.00E-58	108	100
ssrS	ygfE	109	Escherichia_coli_O157H7	8.00E-58	108	100
ssrS	ygfE	109	Salmonella_typhimurium_LT2	2.00E-55	108	96
ssrS	ygfE	109	Salmonella_typhi	2.00E-55	108	96
ssrS	ygfE	109	Yersinia_pestis_CO92	5.00E-47	108	80
ssrS	ygfE	109	Yersinia_pestis_KIM	5.00E-47	108	80
ssrS	ygfA	182	Escherichia_coli_O157H7	1.00E-108	181	100
ssrS	ygfA	182	Escherichia_coli_O157H7_EDL933	1.00E-107	181	99
ssrS	ygfA	182	Salmonella_typhi	3.00E-94	181	87
ssrS	ygfA	182	Salmonella_typhimurium_LT2	4.00E-94	181	87
ssrS	ygfA	182	Yersinia_pestis_KIM	6.00E-75	180	70
ssrS	ygfA	182	Yersinia_pestis_CO92	6.00E-75	180	70
dicF	rzpQ	32	Escherichia_coli_O157H7_EDL933	5.00E-13	31	97
dicF	dicB	62	Escherichia_coli_O157H7	1.00E-27	61	89
dicF	dicB	62	Escherichia_coli_O157H7_EDL933	1.00E-27	61	89
rygC	ygfA	182	Shigella_flexneri_2a	1.00E-107	181	99
rygC	ygfA	182	Escherichia_coli_CFT073	1.00E-106	181	98
rygC	serA	410	Shigella_flexneri_2a	0	409	99
rygC	serA	410	Escherichia_coli_O157H7_EDL933	0	409	99
rygC	serA	410	Escherichia_coli_O157H7	0	409	99
rygC	serA	410	Escherichia_coli_CFT073	0	409	99
rygB	aas	719	Shigella_flexneri_2a	0	718	98
rygB	aas	719	Escherichia_coli_O157H7	0	718	98
rygB	aas	719	Escherichia_coli_O157H7_EDL933	0	718	98
rygB	aas	719	Salmonella_typhimurium_LT2	0	718	90
rygB	aas	719	Yersinia_pestis_KIM	0	714	70
rygB	aas	719	Yersinia_pestis_CO92	0	714	70
rygB	galR	343	Escherichia_coli_O157H7_EDL933	0	342	97
rygB	galR	343	Escherichia_coli_O157H7	0	342	97
rygB	galR	343	Shigella_flexneri_2a	0	342	97
rygB	galR	343	Salmonella_typhimurium_LT2	1.00E-174	342	88
rygB	galR	343	Salmonella_typhi	1.00E-174	342	88
t44	map	264	Escherichia_coli_O157H7_EDL933	1.00E-154	263	100
t44	map	264	Escherichia_coli_O157H7	1.00E-154	263	100
t44	map	264	Salmonella_typhimurium_LT2	1.00E-140	263	89
t44	map	264	Salmonella_typhi	1.00E-140	263	89
t44	map	264	Yersinia_pestis_CO92	1.00E-133	262	84
t44	rpsB	241	Escherichia_coli_O157H7_EDL933	1.00E-137	240	100
t44	rpsB	241	Escherichia_coli_O157H7	1.00E-137	240	100
t44	rpsB	241	Salmonella_typhimurium_LT2	1.00E-134	240	98
t44	rpsB	241	Salmonella_typhi	1.00E-134	240	98
t44	rpsB	241	Yersinia_pestis_CO92	1.00E-130	240	94
rydB	ydiC	122	Escherichia_coli_O157H7_EDL933	6.00E-71	121	99
rydB	ydiC	122	Escherichia_coli_O157H7	6.00E-71	121	99
rydB	ydiC	122	Escherichia_coli_CFT073	6.00E-71	121	99
rydB	ydiC	122	Shigella_flexneri_2a	9.00E-70	121	98
rydB	ydiH	89	Shigella_flexneri_2a	4.00E-48	88	100
rydB	ydiH	89	Escherichia_coli_O157H7_EDL933	4.00E-48	88	100
rydB	ydiH	89	Escherichia_coli_O157H7	4.00E-48	88	100
rydB	ydiH	89	Escherichia_coli_CFT073	2.00E-47	88	99
rydB	ydiH	89	Salmonella_typhimurium_LT2	8.00E-30	65	89
rydB	ydiH	89	Salmonella_typhi	4.00E-29	65	88
ryfA/tp1	sseA	281	Escherichia_coli_O157H7_EDL933	1.00E-157	280	94
ryfA/tp1	sseA	281	Escherichia_coli_O157H7	1.00E-157	280	94
ryfA/tp1	sseB	258	Shigella_flexneri_2a	1.00E-138	257	95
ryfA/tp1	sseB	258	Escherichia_coli_O157H7	1.00E-137	257	94
ryfA/tp1	sseB	258	Escherichia_coli_O157H7_EDL933	1.00E-132	218	93
ryfA/tp1	sseB	258	Salmonella_typhimurium_LT2	1.00E-128	257	86
ryfA/tp1	sseB	258	Salmonella_typhi	1.00E-127	257	86
tke1	yfhK	475	Escherichia_coli_CFT073	0	474	88
tke1	yfhK	475	Escherichia_coli_O157H7_EDL933	0	474	88
tke1	yfhK	475	Escherichia_coli_O157H7	0	474	88
tke1	yfhK	475	Shigella_flexneri_2a	0	474	88
tke1	yfhK	475	Salmonella_typhimurium_LT2	0	474	76
tke1	yfhK	475	Salmonella_typhi	0	445	79
tke1	purL	1295	Escherichia_coli_O157H7	0	1294	98
tke1	purL	1295	Escherichia_coli_O157H7_EDL933	0	1294	98
tke1	purL	1295	Escherichia_coli_CFT073	0	1294	98
tke1	purL	1295	Shigella_flexneri_2a	0	1294	98
tke1	purL	1295	Salmonella_typhimurium_LT2	0	1294	93
tke1	purL	1295	Salmonella_typhi	0	1294	92
tp8/C0730	yqiK	553	Escherichia_coli_CFT073	0	552	80
tp8/C0730	yqiK	553	Escherichia_coli_O157H7_EDL933	0	552	79
tp8/C0730	yqiK	553	Escherichia_coli_O157H7	0	552	79
tp8/C0730	yqiK	553	Salmonella_typhimurium_LT2	0	532	77
tp8/C0730	yqiK	553	Salmonella_typhi	0	532	77
tp8/C0730	rfaE	477	Escherichia_coli_CFT073	0	476	98
tp8/C0730	rfaE	477	Escherichia_coli_O157H7_EDL933	0	476	98
tp8/C0730	rfaE	477	Salmonella_typhimurium_LT2	0	475	92
tp8/C0730	rfaE	477	Salmonella_typhi	0	475	92
IS061	abgR	302	Escherichia_coli_O157H7_EDL933	1.00E-172	301	100
IS061	abgR	302	Escherichia_coli_O157H7	1.00E-172	301	100
IS061	ydaL	187	Escherichia_coli_O157H7_EDL933	1.00E-108	186	99
IS061	ydaL	187	Escherichia_coli_O157H7	1.00E-108	186	99
IS063	ompN	377	Escherichia_coli_CFT073	0	376	95
IS063	ompN	377	Shigella_flexneri_2a	1.00E-161	284	93
IS063	ompN	377	Escherichia_coli_O157H7_EDL933	8.00E-56	117	84
IS063	ompN	377	Escherichia_coli_O157H7	8.00E-56	117	84
IS063	ydbK	1174	Escherichia_coli_O157H7	0	1173	100
IS063	ydbK	1174	Escherichia_coli_O157H7_EDL933	0	1173	99
IS063	ydbK	1174	Shigella_flexneri_2a	0	1173	99
IS063	ydbK	1174	Escherichia_coli_CFT073	0	1173	99
IS063	ydbK	1174	Salmonella_typhimurium_LT2	0	1173	93
IS092	yecJ	83	Shigella_flexneri_2a	3.00E-42	82	99
IS092	yecJ	83	Escherichia_coli_O157H7_EDL933	3.00E-41	82	98
IS092	yecJ	83	Escherichia_coli_O157H7	1.00E-38	78	97
IS092	yecR	107	Shigella_flexneri_2a	7.00E-54	106	89
IS092	yecR	107	Escherichia_coli_O157H7_EDL933	2.00E-53	106	88
IS092	yecR	107	Escherichia_coli_O157H7	2.00E-53	106	88
IS102	yeeP	183	Escherichia_coli_CFT073	1.00E-104	182	98
IS102	yeeP	183	Shigella_flexneri_2a	1.00E-103	182	98
IS102	yeeP	183	Escherichia_coli_O157H7	8.00E-99	182	95
IS102	flu	1039	Escherichia_coli_CFT073	0	1038	85
IS102	flu	1039	Shigella_flexneri_2a	0	1038	84
IS102	flu	1039	Escherichia_coli_O157H7	0	1038	64
IS128	sseB	258	Shigella_flexneri_2a	1.00E-138	257	95
IS183	yhiW	242	Shigella_flexneri_2a	1.00E-139	241	100
IS183	yhiW	242	Escherichia_coli_O157H7_EDL933	1.00E-139	241	100
IS183	yhiW	242	Escherichia_coli_O157H7	1.00E-139	241	100
IS183	yhiW	242	Escherichia_coli_CFT073	1.00E-132	241	95
IS183	yhiX	274	Shigella_flexneri_2a	1.00E-145	273	93
IS183	yhiX	274	Escherichia_coli_O157H7_EDL933	1.00E-145	273	93
IS183	yhiX	274	Escherichia_coli_O157H7	1.00E-145	273	93
IS183	yhiX	274	Escherichia_coli_CFT073	1.00E-135	273	88
C0299	hlyE	303	Escherichia_coli_O157H7_EDL933	1.00E-160	302	95
C0299	hlyE	303	Escherichia_coli_O157H7	1.00E-160	302	95
C0299	hlyE	303	Escherichia_coli_CFT073	3.00E-45	92	94
C0299	umuD	139	Shigella_flexneri_2a	4.00E-64	138	88
C0299	umuD	139	Escherichia_coli_O157H7_EDL933	4.00E-64	138	88
C0299	umuD	139	Escherichia_coli_O157H7	4.00E-64	138	88
C0299	umuD	139	Escherichia_coli_CFT073	2.00E-63	138	87
C0343	ydaN	327	Escherichia_coli_O157H7_EDL933	1.00E-177	326	94
C0343	ydaN	327	Escherichia_coli_O157H7	1.00E-177	326	94
C0343	ydaN	327	Escherichia_coli_CFT073	1.00E-177	326	94
C0343	ydaN	327	Shigella_flexneri_2a	1.00E-177	326	93
C0343	dbpA	457	Escherichia_coli_O157H7_EDL933	0	456	100
C0343	dbpA	457	Escherichia_coli_O157H7	0	456	100
C0343	dbpA	457	Escherichia_coli_CFT073	0	456	99
C0343	dbpA	457	Shigella_flexneri_2a	0	412	99
C0362	fdnI	217	Escherichia_coli_O157H7_EDL933	1.00E-109	201	91
C0362	fdnI	217	Escherichia_coli_O157H7	1.00E-109	201	91
C0362	fdnI	217	Shigella_flexneri_2a	1.00E-109	201	91
C0362	fdnI	217	Escherichia_coli_CFT073	1.00E-108	201	91
C0362	yddM	94	Shigella_flexneri_2a	7.00E-48	93	99
C0362	yddM	94	Escherichia_coli_O157H7_EDL933	1.00E-47	93	98
C0362	yddM	94	Escherichia_coli_O157H7	1.00E-47	93	98
C0362	yddM	94	Escherichia_coli_CFT073	2.00E-40	80	100
C0465	tar	553	Escherichia_coli_CFT073	0	552	84
C0465	tar	553	Escherichia_coli_O157H7	0	552	84
C0465	tar	553	Escherichia_coli_O157H7_EDL933	0	552	84
C0465	tar	553	Shigella_flexneri_2a	0	552	83
C0465	cheW	167	Shigella_flexneri_2a	7.00E-80	166	91
C0465	cheW	167	Escherichia_coli_O157H7	7.00E-80	166	91
C0465	cheW	167	Escherichia_coli_CFT073	7.00E-80	166	91
C0465	cheW	167	Escherichia_coli_O157H7_EDL933	3.00E-79	166	90
C0614	sseB	258	Shigella_flexneri_2a	1.00E-138	257	95
C0664	ygbD	377	Escherichia_coli_O157H7_EDL933	0	376	98
C0664	ygbD	377	Escherichia_coli_O157H7	0	376	98
C0664	ygbD	377	Escherichia_coli_CFT073	0	376	98
C0664	ygbD	377	Shigella_flexneri_2a	0	376	97
C0664	ygbD	377	Salmonella_typhimurium_LT2	0.13	37	37
C0664	ygbD	377	Salmonella_typhi	0.38	44	43
C0664	hypF	750	Shigella_flexneri_2a	0	749	90
C0664	hypF	750	Escherichia_coli_O157H7	0	749	90
C0664	hypF	750	Escherichia_coli_O157H7_EDL933	0	749	90
C0664	hypF	750	Escherichia_coli_CFT073	0	749	89
C0719	yghK	560	Escherichia_coli_CFT073	0	559	87
C0719	yghK	560	Shigella_flexneri_2a	0	483	86
C0719	glcB	723	Shigella_flexneri_2a	0	722	97
C0719	glcB	723	Escherichia_coli_CFT073	0	722	96
sraA	clpX	424	Shigella_flexneri_2a	0	423	100
sraA	clpX	424	Escherichia_coli_O157H7_EDL933	0	423	100
sraA	clpX	424	Escherichia_coli_O157H7	0	423	100
sraA	clpX	424	Escherichia_coli_CFT073	0	423	100
sraA	clpX	424	Salmonella_typhimurium_LT2	0	423	98
sraA	clpX	424	Salmonella_typhi	0	423	98
sraA	clpX	424	Yersinia_pestis_CO92	0	423	93
sraA	lon	784	Escherichia_coli_CFT073	0	783	98
sraA	lon	784	Escherichia_coli_O157H7	0	783	98
sraA	lon	784	Shigella_flexneri_2a	0	783	98
sraA	lon	784	Escherichia_coli_O157H7_EDL933	0	783	98
sraA	lon	784	Salmonella_typhi	0	783	98
sraA	lon	784	Salmonella_typhimurium_LT2	0	783	97
sraA	lon	784	Yersinia_pestis_CO92	0	783	90
tpke11	dnaK	638	Escherichia_coli_O157H7_EDL933	0	600	98
tpke11	dnaK	638	Escherichia_coli_O157H7	0	600	98
tpke11	dnaK	638	Escherichia_coli_CFT073	0	600	98
tpke11	dnaK	638	Shigella_flexneri_2a	0	600	98
tpke11	dnaK	638	Salmonella_typhi	0	600	95
tpke11	dnaK	638	Salmonella_typhimurium_LT2	0	600	95
tpke11	dnaJ	376	Escherichia_coli_O157H7_EDL933	1.00E-164	375	77
tpke11	dnaJ	376	Escherichia_coli_O157H7	1.00E-164	375	77
tpke11	dnaJ	376	Escherichia_coli_CFT073	1.00E-164	375	77
tpke11	dnaJ	376	Shigella_flexneri_2a	1.00E-163	375	76
tpke11	dnaJ	376	Salmonella_typhimurium_LT2	1.00E-157	375	74
tpke11	dnaJ	376	Salmonella_typhi	1.00E-157	375	74
tp2	pdhR	254	Escherichia_coli_O157H7_EDL933	1.00E-127	227	100
tp2	pdhR	254	Escherichia_coli_O157H7	1.00E-127	227	100
tp2	pdhR	254	Shigella_flexneri_2a	1.00E-126	227	100
tp2	pdhR	254	Salmonella_typhimurium_LT2	1.00E-124	227	97
tp2	pdhR	254	Salmonella_typhi	1.00E-124	227	97
tp2	aceE	887	Escherichia_coli_O157H7_EDL933	0	886	100
tp2	aceE	887	Escherichia_coli_O157H7	0	886	100
tp2	aceE	887	Shigella_flexneri_2a	0	886	100
tp2	aceE	887	Salmonella_typhi	0	886	96
tp2	aceE	887	Salmonella_typhimurium_LT2	0	886	96
tpke70	ddg	306	Shigella_flexneri_2a	0	305	100
tpke70	ddg	306	Escherichia_coli_O157H7_EDL933	0	305	100
tpke70	ddg	306	Escherichia_coli_O157H7	0	305	100
tpke70	ddg	306	Escherichia_coli_CFT073	0	305	98
tpke70	ddg	306	Salmonella_typhi	1.00E-167	305	91
tpke70	ddg	306	Salmonella_typhimurium_LT2	1.00E-167	305	91
tpke70	yfdZ	412	Escherichia_coli_O157H7_EDL933	0	411	100
tpke70	yfdZ	412	Escherichia_coli_O157H7	0	411	100
tpke70	yfdZ	412	Escherichia_coli_CFT073	0	411	100
tpke70	yfdZ	412	Salmonella_typhimurium_LT2	0	411	96
tpke70	yfdZ	412	Shigella_flexneri_2a	0	383	99
ryeE	yegQ	453	Escherichia_coli_O157H7_EDL933	0	452	96
ryeE	yegQ	453	Escherichia_coli_O157H7	0	452	96
ryeE	yegQ	453	Shigella_flexneri_2a	0	452	96
ryeE	yegQ	453	Salmonella_typhimurium_LT2	0	452	93
ryeE	yegQ	453	Salmonella_typhi	0	452	93
ryeE	yegQ	453	Escherichia_coli_CFT073	4.00E-06	18	100
rybB	ybjK	178	Escherichia_coli_O157H7	1.00E-98	177	99
rybB	ybjK	178	Escherichia_coli_O157H7_EDL933	6.00E-98	177	99
rybB	ybjK	178	Shigella_flexneri_2a	2.00E-97	177	98
rybB	ybjK	178	Salmonella_typhimurium_LT2	3.00E-78	177	79
rybB	ybjK	178	Salmonella_typhi	9.00E-78	177	78
rybB	ybjL	561	Escherichia_coli_O157H7_EDL933	0	560	94
rybB	ybjL	561	Escherichia_coli_O157H7	0	560	94
rybB	ybjL	561	Escherichia_coli_CFT073	0	560	94
rybB	ybjL	561	Shigella_flexneri_2a	0	560	94
rybB	ybjL	561	Salmonella_typhimurium_LT2	0	560	90
rybB	ybjL	561	Salmonella_typhi	0	560	90
rybB	ybjL	561	Yersinia_pestis_KIM	0	559	84
rybB	ybjL	561	Yersinia_pestis_CO92	0	559	84
rybA	ybiP	527	Escherichia_coli_O157H7	0	526	98
rybA	ybiP	527	Shigella_flexneri_2a	0	526	98
rybA	ybiP	527	Salmonella_typhimurium_LT2	0	525	82
rybA	ybiP	527	Salmonella_typhi	0	525	82
rybA	ybiQ	155	Shigella_flexneri_2a	5.00E-84	154	99
rybA	ybiQ	155	Escherichia_coli_O157H7	5.00E-84	154	99
rybA	ybiQ	155	Salmonella_typhimurium_LT2	2.00E-77	152	92
rybA	ybiQ	155	Salmonella_typhi	2.00E-77	152	92
ryeC	yegL	219	Escherichia_coli_O157H7_EDL933	1.00E-114	218	91
ryeC	yegL	219	Escherichia_coli_O157H7	1.00E-114	218	91
ryeC	yegL	219	Escherichia_coli_CFT073	1.00E-113	218	90
ryeC	yegL	219	Shigella_flexneri_2a	1.00E-93	187	89
ryeC	yegL	219	Lactococcus_lactis	0.33	42	37
ryeC	yegM	415	Escherichia_coli_O157H7	0	414	96
ryeC	yegM	415	Escherichia_coli_CFT073	0	414	96
ryeC	yegM	415	Salmonella_typhi	0	414	81
ryeC	yegM	415	Salmonella_typhimurium_LT2	0	414	81
ryeD	yegL	219	Escherichia_coli_O157H7_EDL933	1.00E-114	218	91
ryeD	yegL	219	Escherichia_coli_O157H7	1.00E-114	218	91
ryeD	yegL	219	Escherichia_coli_CFT073	1.00E-113	218	90
ryeD	yegL	219	Shigella_flexneri_2a	1.00E-93	187	89
ryeD	yegL	219	Lactococcus_lactis	0.33	42	37
ryeD	yegM	415	Escherichia_coli_O157H7	0	414	96
ryeD	yegM	415	Escherichia_coli_CFT073	0	414	96
ryeD	yegM	415	Salmonella_typhi	0	414	81
ryeD	yegM	415	Salmonella_typhimurium_LT2	0	414	81
ryeB	pphA	218	Escherichia_coli_O157H7_EDL933	1.00E-132	217	99
ryeB	pphA	218	Escherichia_coli_O157H7	1.00E-132	217	99
ryeB	pphA	218	Escherichia_coli_CFT073	1.00E-131	217	98
ryeB	yebY	113	Shigella_flexneri_2a	4.00E-53	112	87
ryeB	yebY	113	Escherichia_coli_O157H7_EDL933	2.00E-52	112	85
ryeB	yebY	113	Escherichia_coli_O157H7	2.00E-52	112	85
ryeB	yebY	113	Yersinia_pestis_KIM	3.00E-30	90	64
ryeB	yebY	113	Yersinia_pestis_CO92	3.00E-30	90	64