sRNA

Table 1 Conservation of the small RNA genes with exact location information

(E-value < 1.0)

sRNA	Length of sRNA	Conserved in	E-value	Length of conserved region	Percent identity
sraB	169	Shigella_flexneri_2a	1.00E-79	153	99
sraB	169	Escherichia_coli_O157H7_EDL933	1.00E-79	153	99
sraB	169	Escherichia_coli_O157H7	1.00E-79	153	99
sraB	169	Escherichia_coli_CFT073	6.00E-32	81	96
sraB	169	Salmonella_typhimurium_LT2	1.00E-23	71	94
sraB	169	Salmonella_typhi	1.00E-23	71	94
sraB	169	Xanthomonas_citri	0.62	17	100
sraB	169	Archaeoglobus_fulgidus	0.62	21	95
sraC	249	Escherichia_coli_O157H7_EDL933	1.00E-134	248	99
sraC	249	Escherichia_coli_O157H7	1.00E-134	248	99
sraC	249	Escherichia_coli_CFT073	1.00E-131	248	99
sraC	249	Shigella_flexneri_2a	1.00E-104	211	98
sraC	249	Salmonella_typhimurium_LT2	1.00E-67	145	97
sraC	249	Salmonella_typhi	5.00E-61	142	96
sraC	249	Yersinia_pestis_KIM	5.00E-30	93	94
sraC	249	Yersinia_pestis_CO92	5.00E-30	93	94
sraC	249	Staphylococcus_aureus_N315	0.95	17	100
sraC	249	Staphylococcus_aureus_Mu50	0.95	17	100
sraC	249	Sinorhizobium_meliloti_plasmid	0.95	17	100
sraC	249	Methanosarcina_mazei	0.95	17	100
sraC	249	Helicobacter_pylori_J99	0.95	17	100
sraC	249	Helicobacter_pylori_26695	0.95	17	100
sraD	76	Escherichia_coli_CFT073	4.00E-31	75	99
sraD	76	Shigella_flexneri_2a	9.00E-29	75	97
sraD	76	Escherichia_coli_O157H7_EDL933	9.00E-29	75	97
sraD	76	Escherichia_coli_O157H7	9.00E-29	75	97
sraD	76	Salmonella_typhimurium_LT2	5.00E-15	75	91
sraD	76	Salmonella_typhi	5.00E-15	75	91
sraD	76	Yersinia_pestis_KIM	4.00E-09	30	100
sraD	76	Yersinia_pestis_CO92	4.00E-09	30	100
sraD	76	Listeria_innocua	0.061	18	100
sraD	76	Thermoanaerobacter_tengcongensis	0.96	16	100
sraD	76	Streptococcus_pyogenes_MGAS8232	0.96	16	100
gcvB	205	Escherichia_coli_O157H7_EDL933	1.00E-108	197	100
gcvB	205	Escherichia_coli_O157H7	1.00E-108	197	100
gcvB	205	Escherichia_coli_CFT073	1.00E-108	197	100
gcvB	205	Shigella_flexneri_2a	1.00E-106	197	99
gcvB	205	Salmonella_typhimurium_LT2	2.00E-84	197	95
gcvB	205	Salmonella_typhi	2.00E-84	197	95
gcvB	205	Yersinia_pestis_KIM	2.00E-16	43	100
gcvB	205	Yersinia_pestis_CO92	2.00E-16	43	100
gcvB	205	Xylella_fastidiosa	0.77	17	100
sraE	88	Shigella_flexneri_2a	3.00E-38	79	100
sraE	88	Escherichia_coli_O157H7_EDL933	3.00E-38	79	100
sraE	88	Escherichia_coli_O157H7	3.00E-38	79	100
sraE	88	Escherichia_coli_CFT073	3.00E-38	79	100
sraE	88	Salmonella_typhimurium_LT2	2.00E-33	79	99
sraE	88	Salmonella_typhi	2.00E-33	79	99
sraE	88	Yersinia_pestis_KIM	0.29	17	100
sraE	88	Yersinia_pestis_CO92	0.29	17	100
sraF	189	Escherichia_coli_O157H7_EDL933	9.00E-96	188	99
sraF	189	Escherichia_coli_O157H7	9.00E-96	188	99
sraF	189	Escherichia_coli_CFT073	9.00E-96	188	99
sraF	189	Shigella_flexneri_2a	2.00E-93	188	98
sraF	189	Salmonella_typhi	1.00E-48	160	92
sraF	189	Salmonella_typhimurium_LT2	2.00E-47	150	92
sraF	189	Listeria_monocytogenes	0.7	17	100
sraG	174	Shigella_flexneri_2a	5.00E-94	173	100
sraG	174	Escherichia_coli_O157H7_EDL933	5.00E-94	173	100
sraG	174	Escherichia_coli_O157H7	5.00E-94	173	100
sraG	174	Escherichia_coli_CFT073	5.00E-94	173	100
sraG	174	Salmonella_typhimurium_LT2	1.00E-60	158	94
sraG	174	Salmonella_typhi	1.00E-60	158	94
sraG	174	Yersinia_pestis_KIM	1.00E-08	42	93
sraG	174	Yersinia_pestis_CO92	1.00E-08	42	93
sraG	174	Thermosynechococcus_elongatus	0.64	17	100
sraG	174	Streptococcus_agalactiae_NEM316	0.64	17	100
sraG	174	Streptococcus_agalactiae_2603	0.64	17	100
sraG	174	Pseudomonas_aeruginosa	0.64	17	100
sraH	108	Shigella_flexneri_2a	7.00E-55	107	100
sraH	108	Escherichia_coli_CFT073	7.00E-55	107	100
sraH	108	Escherichia_coli_O157H7_EDL933	2.00E-52	107	99
sraH	108	Escherichia_coli_O157H7	2.00E-52	107	99
sraH	108	Salmonella_typhimurium_LT2	1.00E-19	52	98
sraH	108	Salmonella_typhi	1.00E-19	52	98
sraH	108	Yersinia_pestis_KIM	2.00E-09	35	97
sraH	108	Yersinia_pestis_CO92	2.00E-09	35	97
sraI	94	Shigella_flexneri_2a	8.00E-42	85	100
sraI	94	Escherichia_coli_O157H7_EDL933	8.00E-42	85	100
sraI	94	Escherichia_coli_O157H7	8.00E-42	85	100
sraI	94	Escherichia_coli_CFT073	8.00E-42	85	100
sraI	94	Yersinia_pestis_KIM	2.00E-18	57	97
sraI	94	Yersinia_pestis_CO92	2.00E-18	57	97
sraI	94	Salmonella_typhimurium_LT2	6.00E-18	45	100
sraI	94	Salmonella_typhi	9.00E-11	41	95
sraI	94	Vibrio_cholerae	1.00E-06	26	100
sraI	94	Shewanella_oneidensis	0.08	18	100
sraJ	172	Shigella_flexneri_2a	8.00E-93	171	100
sraJ	172	Escherichia_coli_O157H7_EDL933	8.00E-93	171	100
sraJ	172	Escherichia_coli_O157H7	8.00E-93	171	100
sraJ	172	Escherichia_coli_CFT073	8.00E-93	171	100
sraJ	172	Salmonella_typhimurium_LT2	1.00E-63	171	93
sraJ	172	Salmonella_typhi	1.00E-63	171	93
sraJ	172	Fusobacterium_nucleatum	0.16	18	100
sraK	245	Shigella_flexneri_2a	1.00E-134	244	100
sraK	245	Escherichia_coli_O157H7_EDL933	1.00E-134	244	100
sraK	245	Escherichia_coli_O157H7	1.00E-134	244	100
sraK	245	Escherichia_coli_CFT073	1.00E-129	244	99
sraK	245	Salmonella_typhimurium_LT2	3.00E-65	240	88
sraK	245	Salmonella_typhi	3.00E-65	240	88
sraK	245	Yersinia_pestis_KIM	0.004	37	89
sraK	245	Yersinia_pestis_CO92	0.004	37	89
sraK	245	Sinorhizobium_meliloti_plasmid	0.93	17	100
sraK	245	Deinococcus_radiodurans	0.93	17	100
sraL	140	Escherichia_coli_O157H7_EDL933	8.00E-74	139	100
sraL	140	Escherichia_coli_O157H7	8.00E-74	139	100
sraL	140	Escherichia_coli_CFT073	8.00E-74	139	100
sraL	140	Shigella_flexneri_2a	2.00E-71	139	99
sraL	140	Salmonella_typhimurium_LT2	1.00E-41	139	93
sraL	140	Salmonella_typhi	8.00E-37	139	92
sraL	140	Xanthomonas_campestris	0.5	17	100
sraL	140	Shewanella_oneidensis	0.5	17	100
dsrA	85	Escherichia_coli_O157H7_EDL933	3.00E-41	84	100
dsrA	85	Escherichia_coli_O157H7	3.00E-41	84	100
dsrA	85	Escherichia_coli_CFT073	3.00E-41	84	100
dsrA	85	Shigella_flexneri_2a	7.00E-39	84	99
dsrA	85	Salmonella_typhimurium_LT2	4.00E-19	67	94
dsrA	85	Salmonella_typhi	4.00E-19	67	94
dsrA	85	Listeria_innocua	0.28	17	100
ssrA	466	Shigella_flexneri_2a	0	465	100
ssrA	466	Escherichia_coli_O157H7_EDL933	0	465	99
ssrA	466	Escherichia_coli_O157H7	0	465	99
ssrA	466	Escherichia_coli_CFT073	0	421	98
ssrA	466	Salmonella_typhi	0	385	97
ssrA	466	Salmonella_typhimurium_LT2	1.00E-180	369	97
ssrA	466	Yersinia_pestis_KIM	1.00E-120	362	91
ssrA	466	Yersinia_pestis_CO92	1.00E-120	362	91
ssrA	466	Pasteurella_multocida	2.00E-55	207	89
ssrA	466	Haemophilus_influenzae	5.00E-41	211	86
ssrA	466	Vibrio_cholerae	4.00E-29	171	86
ssrA	466	Shewanella_oneidensis	1.00E-26	116	89
ssrA	466	Wigglesworthia_brevipalpis	5.00E-07	32	97
ssrA	466	Neisseria_meningitidis_Z2491	5.00E-07	40	93
ssrA	466	Neisseria_meningitidis_MC58	5.00E-07	40	93
ssrA	466	Buchnera_aphidicola_sg	8.00E-06	35	94
ssrA	466	Buchnera_sp	5.00E-04	39	90
ssrA	466	Chlorobium_tepidum_TLS	0.008	30	93
ssrA	466	Burrelia_burgdorferi	0.03	29	93
ssrA	466	Sinorhizobium_meliloti	0.47	18	100
ssrA	466	Ralstonia_solanacearum	0.47	30	90
oxyS	110	Shigella_flexneri_2a	5.00E-56	109	100
oxyS	110	Escherichia_coli_O157H7_EDL933	5.00E-56	109	100
oxyS	110	Escherichia_coli_O157H7	5.00E-56	109	100
oxyS	110	Escherichia_coli_CFT073	5.00E-56	109	100
oxyS	110	Salmonella_typhimurium_LT2	7.00E-09	92	85
oxyS	110	Salmonella_typhi	7.00E-09	92	85
spf	109	Shigella_flexneri_2a	2.00E-55	108	100
spf	109	Escherichia_coli_O157H7_EDL933	2.00E-55	108	100
spf	109	Escherichia_coli_O157H7	2.00E-55	108	100
spf	109	Escherichia_coli_CFT073	2.00E-55	108	100
spf	109	Salmonella_typhimurium_LT2	7.00E-49	108	98
spf	109	Salmonella_typhi	7.00E-49	108	98
spf	109	Yersinia_pestis_KIM	6.00E-37	107	94
spf	109	Yersinia_pestis_CO92	6.00E-37	107	94
spf	109	Vibrio_cholerae	1.00E-19	108	87
spf	109	Shewanella_oneidensis	4.00E-10	39	98
spf	109	Methanosarcina_acetivorans	0.096	22	96
spf	109	Aquifex_aeolicus	0.38	17	100
rprA	105	Escherichia_coli_O157H7_EDL933	7.00E-49	97	100
rprA	105	Escherichia_coli_O157H7	7.00E-49	97	100
rprA	105	Escherichia_coli_CFT073	7.00E-49	97	100
rprA	105	Shigella_flexneri_2a	2.00E-46	97	99
rprA	105	Salmonella_typhimurium_LT2	1.00E-41	97	97
rprA	105	Salmonella_typhi	1.00E-41	97	97
rprA	105	Yersinia_pestis_KIM	0.001	21	100
rprA	105	Yersinia_pestis_CO92	0.001	21	100
rprA	105	Thermoanaerobacter_tengcongensis	0.36	17	100
rprA	105	Methanosarcina_mazei	0.36	25	92
csrB	360	Shigella_flexneri_2a	0	349	100
csrB	360	Escherichia_coli_O157H7_EDL933	0	349	99
csrB	360	Escherichia_coli_O157H7	0	349	99
csrB	360	Escherichia_coli_CFT073	0	349	99
csrB	360	Salmonella_typhimurium_LT2	6.00E-77	342	87
csrB	360	Salmonella_typhi	3.00E-72	342	86
csrB	360	Yersinia_pestis_KIM	4.00E-04	54	89
csrB	360	Yersinia_pestis_CO92	4.00E-04	54	89
csrB	360	Thermosynechococcus_elongatus	0.023	20	100
csrB	360	Bradyrhizobium_japonicum	0.09	23	96
csrB	360	Vibrio_cholerae	0.36	18	100
csrB	360	Methanosarcina_acetivorans	0.36	18	100
micF	174	Shigella_flexneri_2a	3.00E-89	165	100
micF	174	Escherichia_coli_O157H7_EDL933	2.00E-84	161	99
micF	174	Escherichia_coli_O157H7	2.00E-84	161	99
micF	174	Escherichia_coli_CFT073	1.00E-79	161	98
micF	174	Salmonella_typhimurium_LT2	2.00E-41	133	91
micF	174	Salmonella_typhi	2.00E-41	133	91
micF	174	Wigglesworthia_brevipalpis	0.64	17	100
micF	174	Sulfolobus_solfataricus	0.64	17	100
micF	174	Clostridium_acetobutylicum	0.64	21	95
ffs	138	Escherichia_coli_O157H7_EDL933	1.00E-72	137	100
ffs	138	Escherichia_coli_O157H7	1.00E-72	137	100
ffs	138	Escherichia_coli_CFT073	1.00E-72	137	100
ffs	138	Salmonella_typhimurium_LT2	3.00E-70	137	99
ffs	138	Salmonella_typhi	3.00E-70	137	99
ffs	138	Shigella_flexneri_2a	7.00E-68	137	99
ffs	138	Yersinia_pestis_KIM	1.00E-17	117	85
ffs	138	Yersinia_pestis_CO92	1.00E-17	117	85
ffs	138	Vibrio_cholerae	3.00E-08	57	88
ffs	138	Haemophilus_influenzae	8.00E-06	25	100
ffs	138	Pseudomonas_aeruginosa	3.00E-05	24	100
ffs	138	Sinorhizobium_meliloti	1.00E-04	23	100
ffs	138	Mesorhizobium_loti	1.00E-04	23	100
ffs	138	Brucella_suis_1330	1.00E-04	23	100
ffs	138	Brucella_melitensis	1.00E-04	23	100
ffs	138	Bradyrhizobium_japonicum	1.00E-04	23	100
ffs	138	Agrobacterium_tumefaciens_C58	1.00E-04	23	100
ffs	138	Listeria_monocytogenes	5.00E-04	26	96
ffs	138	Listeria_innocua	5.00E-04	26	96
ffs	138	Chlorobium_tepidum_TLS	5.00E-04	26	96
ffs	138	Bacillus_subtilis	5.00E-04	26	96
ffs	138	Thermosynechococcus_elongatus	0.002	21	100
ffs	138	Thermoanaerobacter_tengcongensis	0.002	21	100
ffs	138	Oceanobacillus_iheyensis	0.002	21	100
ffs	138	Clostridium_perfringens	0.002	21	100
ffs	138	Clostridium_acetobutylicum	0.002	21	100
ffs	138	Bacillus_halodurans	0.002	21	100
ffs	138	Buchnera_sp	0.49	25	92
rnpB	377	Escherichia_coli_O157H7_EDL933	0	376	98
rnpB	377	Escherichia_coli_O157H7	0	376	98
rnpB	377	Escherichia_coli_CFT073	0	376	98
rnpB	377	Shigella_flexneri_2a	0	376	98
rnpB	377	Salmonella_typhimurium_LT2	0	374	97
rnpB	377	Salmonella_typhi	0	374	97
rnpB	377	Yersinia_pestis_KIM	1.00E-136	362	92
rnpB	377	Yersinia_pestis_CO92	1.00E-136	362	92
rnpB	377	Shewanella_oneidensis	1.00E-44	195	87
rnpB	377	Vibrio_cholerae	1.00E-31	97	93
rnpB	377	Pseudomonas_putida_KT2440	3.00E-23	91	90
rnpB	377	Pseudomonas_aeruginosa	1.00E-22	90	90
rnpB	377	Pasteurella_multocida	1.00E-22	90	90
rnpB	377	Agrobacterium_tumefaciens_C58	4.00E-16	91	88
rnpB	377	Xanthomonas_citri	3.00E-14	91	87
rnpB	377	Xanthomonas_campestris	3.00E-14	91	87
rnpB	377	Haemophilus_influenzae	4.00E-13	90	86
rnpB	377	Xylella_fastidiosa	7.00E-12	91	86
rnpB	377	Mesorhizobium_loti	7.00E-12	92	86
rnpB	377	Buchnera_aphidicola_sg	3.00E-11	40	97
rnpB	377	Corynebacterium_glutamicum	4.00E-10	33	100
rnpB	377	Corynebacterium_efficiens_YS-314	4.00E-10	33	100
rnpB	377	Clostridium_acetobutylicum	7.00E-09	39	95
rnpB	377	Buchnera_sp	7.00E-09	39	95
rnpB	377	Bradyrhizobium_japonicum	7.00E-09	35	97
rnpB	377	Neisseria_meningitidis_MC58	3.00E-08	38	95
rnpB	377	Mycobacterium_leprae	4.00E-07	32	97
rnpB	377	Brucella_suis_1330	4.00E-07	36	95
rnpB	377	Brucella_melitensis	4.00E-07	36	95
rnpB	377	Thermoanaerobacter_tengcongensis	2.00E-06	39	93
rnpB	377	Sinorhizobium_meliloti	6.00E-06	34	94
rnpB	377	Ralstonia_solanacearum	6.00E-06	34	94
rnpB	377	Neisseria_meningitidis_Z2491	6.00E-06	38	92
rnpB	377	Mycobacterium_tuberculosis_H37Rv	2.00E-05	29	97
rnpB	377	Mycobacterium_tuberculosis_CDC1551	2.00E-05	29	97
rnpB	377	Helicobacter_pylori_J99	2.00E-05	33	94
rnpB	377	Helicobacter_pylori_26695	2.00E-05	33	94
rnpB	377	Synechocystis_PCC6803	1.00E-04	32	94
rnpB	377	Nostoc_sp	1.00E-04	32	94
rnpB	377	Deinococcus_radiodurans	1.00E-04	28	97
rnpB	377	Caulobacter_crescentus	1.00E-04	32	94
rnpB	377	Wigglesworthia_brevipalpis	4.00E-04	35	92
rnpB	377	Treponema_pallidum	4.00E-04	35	92
rnpB	377	Clostridium_perfringens	4.00E-04	27	96
rnpB	377	Thermosynechococcus_elongatus	0.002	34	91
rnpB	377	Streptomyces_coelicolor	0.002	30	94
rnpB	377	Rickettsia_prowazekii	0.006	33	91
rnpB	377	Rickettsia_conorii	0.006	33	91
rnpB	377	Leptospira_interrogans	0.006	33	91
ssrS	183	Escherichia_coli_O157H7_EDL933	2.00E-99	182	100
ssrS	183	Escherichia_coli_O157H7	2.00E-99	182	100
ssrS	183	Escherichia_coli_CFT073	2.00E-99	182	100
ssrS	183	Shigella_flexneri_2a	6.00E-97	182	99
ssrS	183	Salmonella_typhimurium_LT2	3.00E-92	182	98
ssrS	183	Salmonella_typhi	3.00E-92	182	98
ssrS	183	Yersinia_pestis_KIM	7.00E-41	180	87
ssrS	183	Yersinia_pestis_CO92	7.00E-41	180	87
dicF	53	Escherichia_coli_O157H7_EDL933	2.00E-22	52	100
dicF	53	Escherichia_coli_O157H7	2.00E-22	52	100
dicF	53	Escherichia_coli_CFT073	2.00E-22	52	100
dicF	53	Streptococcus_pyogenes_MGAS8232	0.6	16	100
dicF	53	Streptococcus_pyogenes	0.6	16	100
rygB	84	Escherichia_coli_O157H7	1.00E-40	83	100
rygB	84	Escherichia_coli_CFT073	1.00E-40	83	100
rygB	84	Shigella_flexneri_2a	3.00E-38	83	99
rygB	84	Escherichia_coli_O157H7_EDL933	2.00E-36	83	99
rygB	84	Salmonella_typhimurium_LT2	1.00E-09	83	86
rygB	84	Salmonella_typhi	1.00E-09	83	86
rygB	84	Yersinia_pestis_KIM	0.07	26	93
rygB	84	Yersinia_pestis_CO92	0.07	26	93
t44	136	Shigella_flexneri_2a	2.00E-71	135	100
t44	136	Escherichia_coli_O157H7_EDL933	2.00E-71	135	100
t44	136	Escherichia_coli_O157H7	2.00E-71	135	100
t44	136	Escherichia_coli_CFT073	2.00E-71	135	100
t44	136	Salmonella_typhimurium_LT2	2.00E-46	104	98
t44	136	Salmonella_typhi	2.00E-46	104	98
t44	136	Yersinia_pestis_KIM	1.00E-04	35	92
t44	136	Yersinia_pestis_CO92	1.00E-04	35	92
t44	136	Xanthomonas_citri	0.49	25	92
rydB	68	Shigella_flexneri_2a	3.00E-31	67	100
rydB	68	Escherichia_coli_O157H7_EDL933	7.00E-29	67	99
rydB	68	Escherichia_coli_O157H7	7.00E-29	67	99
rydB	68	Escherichia_coli_CFT073	7.00E-29	67	99
rydB	68	Salmonella_typhimurium_LT2	1.00E-18	66	93
rydB	68	Salmonella_typhi	1.00E-18	66	93
rydB	68	Shewanella_oneidensis	0.83	16	100
rydB	68	Bacillus_halodurans	0.83	16	100
ryfA/tp1	303	Escherichia_coli_CFT073	1.00E-154	301	98
ryfA/tp1	303	Escherichia_coli_O157H7_EDL933	1.00E-132	300	95
ryfA/tp1	303	Escherichia_coli_O157H7	1.00E-132	300	95
ryfA/tp1	303	Shigella_flexneri_2a	1.00E-126	302	94
ryfA/tp1	303	Salmonella_typhi	3.00E-35	175	86
ryfA/tp1	303	Salmonella_typhimurium_LT2	1.00E-31	185	84
ryfA/tp1	303	Oceanobacillus_iheyensis	0.3	18	100
tke1	149	Shigella_flexneri_2a	9.00E-77	148	99
tke1	149	Escherichia_coli_O157H7_EDL933	9.00E-77	148	99
tke1	149	Escherichia_coli_O157H7	9.00E-77	148	99
tke1	149	Escherichia_coli_CFT073	9.00E-77	148	99
tke1	149	Salmonella_typhimurium_LT2	3.00E-55	148	93
tke1	149	Salmonella_typhi	2.00E-50	148	92
tke1	149	Yersinia_pestis_KIM	0.14	38	87
tke1	149	Yersinia_pestis_CO92	0.14	38	87
tke1	149	Corynebacterium_glutamicum	0.54	17	100
tp8/C0730	145	Shigella_flexneri_2a	3.00E-67	144	98
tp8/C0730	145	Escherichia_coli_O157H7_EDL933	3.00E-67	144	98
tp8/C0730	145	Escherichia_coli_O157H7	3.00E-67	144	98
tp8/C0730	145	Escherichia_coli_CFT073	5.00E-41	144	90
tp8/C0730	145	Salmonella_typhi	5.00E-26	130	87
tp8/C0730	145	Salmonella_typhimurium_LT2	1.00E-23	122	87
IS061	159	Escherichia_coli_O157H7_EDL933	2.00E-77	145	100
IS061	159	Escherichia_coli_O157H7	2.00E-77	145	100
IS061	159	Shigella_flexneri_2a	4.00E-39	145	89
IS061	159	Escherichia_coli_CFT073	4.00E-39	145	89
IS061	159	Corynebacterium_glutamicum	0.15	18	100
IS063	118	Shigella_flexneri_2a	5.00E-53	104	100
IS063	118	Escherichia_coli_O157H7_EDL933	5.00E-53	104	100
IS063	118	Escherichia_coli_O157H7	5.00E-53	104	100
IS063	118	Escherichia_coli_CFT073	7.00E-46	104	97
IS063	118	Salmonella_typhimurium_LT2	0.002	21	100
IS063	118	Salmonella_typhi	0.002	21	100
IS063	118	Streptococcus_agalactiae_NEM316	0.42	17	100
IS063	118	Streptococcus_agalactiae_2603	0.42	17	100
IS092	166	Shigella_flexneri_2a	2.00E-81	152	100
IS092	166	Escherichia_coli_O157H7_EDL933	2.00E-81	152	100
IS092	166	Escherichia_coli_O157H7	2.00E-81	152	100
IS092	166	Escherichia_coli_CFT073	1.00E-76	152	99
IS092	166	Methanosarcina_acetivorans	0.15	18	100
IS092	166	Clostridium_acetobutylicum	0.15	18	100
IS092	166	Streptomyces_coelicolor	0.61	17	100
IS092	166	Streptococcus_mutans	0.61	17	100
IS092	166	Neisseria_meningitidis_Z2491	0.61	17	100
IS092	166	Neisseria_meningitidis_MC58	0.61	17	100
IS092	166	Methanosarcina_mazei	0.61	21	95
IS102	204	Escherichia_coli_CFT073	3.00E-46	203	87
IS102	204	Shigella_flexneri_2a	8.00E-44	203	87
IS102	204	Escherichia_coli_O157H7_EDL933	4.00E-15	45	98
IS102	204	Escherichia_coli_O157H7	4.00E-15	45	98
IS102	204	Sulfolobus_solfataricus	0.77	17	100
IS102	204	Salmonella_typhimurium_LT2	0.77	21	95
IS102	204	Pyrobaculum_aerophilum	0.77	17	100
IS128	209	Shigella_flexneri_2a	3.00E-80	158	99
IS128	209	Escherichia_coli_CFT073	6.00E-11	34	100
IS183	114	Shigella_flexneri_2a	1.00E-50	100	100
IS183	114	Escherichia_coli_O157H7_EDL933	1.00E-50	100	100
IS183	114	Escherichia_coli_O157H7	1.00E-50	100	100
IS183	114	Escherichia_coli_CFT073	1.00E-50	100	100
C0067	125	Methanococcus_jannaschii	0.11	22	96
C0067	125	Clostridium_perfringens	0.11	18	100
C0067	125	Vibrio_cholerae	0.44	21	95
C0067	125	Ureaplasma_urealyticum	0.44	17	100
C0067	125	Sulfolobus_tokodaii	0.44	21	95
C0067	125	Oceanobacillus_iheyensis	0.44	17	100
C0299	79	Shigella_flexneri_2a	6.00E-33	78	97
C0299	79	Escherichia_coli_O157H7_EDL933	1.00E-30	74	97
C0299	79	Escherichia_coli_O157H7	1.00E-30	74	97
C0299	79	Escherichia_coli_CFT073	1.00E-30	74	97
C0299	79	Listeria_innocua	1	16	100
C0299	79	Bacillus_halodurans	1	20	95
C0343	75	Shigella_flexneri_2a	2.00E-35	74	100
C0343	75	Escherichia_coli_O157H7_EDL933	2.00E-35	74	100
C0343	75	Escherichia_coli_O157H7	2.00E-35	74	100
C0343	75	Escherichia_coli_CFT073	1.00E-30	74	97
C0343	75	Streptococcus_mutans	0.24	17	100
C0362	386	Escherichia_coli_O157H7_EDL933	1.00E-108	217	98
C0362	386	Escherichia_coli_O157H7	1.00E-108	217	98
C0362	386	Shigella_flexneri_2a	2.00E-95	200	97
C0362	386	Escherichia_coli_CFT073	9.00E-70	215	91
C0362	386	Salmonella_typhimurium_LT2	2.00E-06	31	97
C0362	386	Salmonella_typhi	2.00E-06	31	97
C0362	386	Xanthomonas_citri	0.38	18	100
C0465	78	Shigella_flexneri_2a	4.00E-37	77	100
C0465	78	Escherichia_coli_CFT073	1.00E-34	77	99
C0465	78	Escherichia_coli_O157H7_EDL933	1.00E-30	77	97
C0465	78	Escherichia_coli_O157H7	1.00E-30	77	97
C0465	78	Shewanella_oneidensis	0.064	18	100
C0465	78	Listeria_innocua_plasmid	0.25	17	100
C0465	78	Staphylococcus_aureus_MW2	0.99	16	100
C0465	78	Methanosarcina_acetivorans	0.99	16	100
C0465	78	Lactococcus_lactis	0.99	16	100
C0614	87	Shigella_flexneri_2a	2.00E-42	86	100
C0614	87	Escherichia_coli_CFT073	7.00E-33	86	95
C0614	87	Staphylococcus_aureus_N315	0.29	17	100
C0614	87	Staphylococcus_aureus_Mu50	0.29	17	100
C0614	87	Staphylococcus_aureus_MW2	0.29	17	100
C0664	113	Escherichia_coli_O157H7_EDL933	8.00E-58	112	100
C0664	113	Escherichia_coli_O157H7	8.00E-58	112	100
C0664	113	Shigella_flexneri_2a	5.00E-53	112	98
C0664	113	Escherichia_coli_CFT073	7.00E-43	103	96
C0664	113	Salmonella_typhimurium_LT2	3.00E-08	36	97
C0664	113	Salmonella_typhi	1.00E-07	35	97
C0719	222	Shigella_flexneri_2a	1.00E-120	221	100
C0719	222	Escherichia_coli_CFT073	1.00E-118	221	99