Motif list

List of motifs

Allele 1 2 3 4 5 6 7 8 9 10
A0201-9 - AILTVM - - - - - - AILTVM -
A0201-10 - AILTVM - - - - - - - AILTVM
A6801-9 - AILTVM - - - - - - RK -
A6801-10 - AILTVM - - - - - - - RK
B27-9 - RK - - - - - - LFYRKHMI -
B35-8 - P - - - - - YFMLI - -
B35-9 - P - - - - - - YFMLI -
B53-9 - P - - - - - - - -
B8-8^(*) - - - - - - - AILTVMFYW - -
Db-9 - - - - N - - - AILTVM -
Dd-10^(**) - - - - - - - - - AILTVMFYW
Kb-8 - - - - FY - - AILTVM - -
Kb-9 - - - - - - - - AILTVM -
Ld-9 - PS - - - - - - AILTVMFYW -

Allele	1	2	3	4	5	6	7	8	9	10
A0201-9	-	AILTVM	-	-	-	-	-	-	AILTVM	-
A0201-10	-	AILTVM	-	-	-	-	-	-	-	AILTVM
A6801-9	-	AILTVM	-	-	-	-	-	-	RK	-
A6801-10	-	AILTVM	-	-	-	-	-	-	-	RK
B27-9	-	RK	-	-	-	-	-	-	LFYRKHMI	-
B35-8	-	P	-	-	-	-	-	YFMLI	-	-
B35-9	-	P	-	-	-	-	-	-	YFMLI	-
B53-9	-	P	-	-	-	-	-	-	-	-
B8-8^(*)	-	-	-	-	-	-	-	AILTVMFYW	-	-
Db-9	-	-	-	-	N	-	-	-	AILTVM	-
Dd-10^(**)	-	-	-	-	-	-	-	-	-	AILTVMFYW
Kb-8	-	-	-	-	FY	-	-	AILTVM	-	-
Kb-9	-	-	-	-	-	-	-	-	AILTVM	-
Ld-9	-	PS	-	-	-	-	-	-	AILTVMFYW	-

(*) - The motif is originally defined for 9 amino acids as: K(3) KR(5) L(9) Since we have 8-mers and the internal motif positions are ambiguous, only the Pc motif position is considered here and is defined more broadly.

(**) - The motif is originally defined for 9 amino acids as: G(2) P(3) ILF(9) Since we have 10-mers and the internal motif positions are ambiguous, only the Pc motif position is considered here and is defined more broadly.