List of motifs


Allele1 2 3 4 5 6 78910
A0201-9 -AILTVM--- --- AILTVM -
A0201-10 -AILTVM--- ---- AILTVM
A6801-9 -AILTVM--- --- RK -
A6801-10 -AILTVM--- --- - RK
B27-9 -RK --- --- LFYRKHMI -
B35-8 -P --- --YFMLI - -
B35-9 -P --- --- YFMLI -
B53-9 -P --- --- - -
B8-8(*) -- --- --AILTVMFYW - -
Db-9 -- --N --- AILTVM -
Dd-10(**) -- --- --- - AILTVMFYW
Kb-8 -- --FY--AILTVM --
Kb-9 -- --- --- AILTVM -
Ld-9 -PS --- --- AILTVMFYW-

(*) - The motif is originally defined for 9 amino acids as: K(3) KR(5) L(9) Since we have 8-mers and the internal motif positions are ambiguous, only the Pc motif position is considered here and is defined more broadly.

(**) - The motif is originally defined for 9 amino acids as: G(2) P(3) ILF(9) Since we have 10-mers and the internal motif positions are ambiguous, only the Pc motif position is considered here and is defined more broadly.


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