SSSD

Database of pairs of structurally similar, sequence dissimilar proteins



153l 1lzr 1ash 1cpcA 1ash 1hlb 1ash 1mbd 1ash 2fal 1ash 3sdhA 1bbt1 1bbt2 1bbt1 1pvc1 1bbt3 1bbt2 1bec 1mspA
1bmfA 2reb 1bmtA 3chy 1broA 1ede 1broA 1tca 1broA 1thtA 1byb 1ceo 1byb 1edg 1byb 1lucA 1cnv 1ctn 1cnv 1edg
1cnv 1nar 1cnv 1oyc 1cydA 1dhr 1cydA 1eny 1dhpA 1ceo 1dhpA 1pkm 1dhr 1eny 1din 1tca 1drw 1cydA 1eceA 1ceo
1eceA 1edg 1ede 1din 1ede 1tca 1edhA 1mspA 1fbaA 1ceo 1fim 1otgA 1fnc 1ndh 1fnc 2pia 1gal 3cox 1gca 1dbqA
1ghr 1ceo 1gky 1dekA 1gp1A 1thx 1havA 1arb 1havA 1svpA 1hbq 1bbpA 1hce 1wba 1hcnB 1hcnA 1hcnB 1pdgA 1hmy 1vid
1httA 1sesA 1huw 1hulA 1lbu 1vhh 1lki 1hulA 1lki 1huw 1lki 1rcb 1lki 2gmfA 1ltdA 1nal1 1ltsD 1tiiD 1lucA 1cnv
1lzr 1chkA 1mspA 2hft 1mup 1bbpA 1mup 1hbq 1nar 1ctn 1nfn 1cpq 1obpA 1hbq 1occB 2azaA 1oyc 1ceo 1oyc 1nar
1pbn 1ecpA 1ptvA 1ytw 1pueE 2hts 1pvc1 1bbt2 1rcb 1hulA 1rnl 1bmtA 1sacA 1lcl 1sacA 2ayh 1sbp 1pot 1stmA 1bbt2
1stmA 2mev1 1stmA 2stv 1svpA 1arb 1thtA 1din 1thtA 1tca 1tiiD 1snc 1tlk 1cid 1tlk 1dlhA 1tlk 1dlhB 1tlk 1mspA
1tlk 2hft 1vhrA 1ptvA 1vid 2admA 1vpt 1vid 1xel 1cydA 1xel 1dhr 1xel 1eny 1xnb 2ayh 1xsm 1bcfA 1xvaA 1vid
1xyzA 1ceo 2ayh 1lcl 2dri 1pea 2ebn 1cnv 2ebn 1ctn 2ebn 1nar 2ebn 1smd 2ebn 2aaa 2gdm 1ash 2gdm 1cpcB
2gdm 1mbd 2gdm 3sdhA 2gmfA 1hulA 2gmfA 1rcb 2hbg 1ash 2hbg 1cpcA 2hbg 3sdhA 2kauC 1fkx 2mev1 1bbt2 2por 2omf
2tgi 1bndA 2tgi 1hcnA 2tgi 1hcnB 4enl 2mnr 5p21 1nipA 5p21 1tag

All 126 daps files (gzipped tar file)
README

Evaluation of PSI-BLAST Alignment Accuracy in Comparison to Structural Alignments

DAPS
alignment
PSI-BLAST
alignment
common
agreement
DAPS
length
BLAST
length
Sensitivity Specificity
1 - 153l <-> 1lzr
153l001lzr00.gp153l001lzr00.4 20 97 4020.62 %50.00 %
153l001lzr00.gp153l001lzr00.5 26 97 4626.80 %56.52 %
2 - 1ash <-> 3sdhA
1ash003sdhA0.gp1ash003sdhA0.3 9613612170.59 %79.34 %
3 - 1bbpA <-> 1hbq
1bbpA01hbq00.gp1bbpA01hbq00.1 9415212661.84 %74.60 %
1bbpA01hbq00.gp1bbpA01hbq00.2 8815211957.89 %73.95 %
1bbpA01hbq00.gp1bbpA01hbq00.310815214071.05 %77.14 %
1bbpA01hbq00.gp1bbpA01hbq00.410315212867.76 %80.47 %
1bbpA01hbq00.gp1bbpA01hbq00.511315214074.34 %80.71 %
4 - 1bbpA <-> 1mup
1bbpA01mup00.gp1bbpA01mup00.3 7414113652.48 %54.41 %
1bbpA01mup00.gp1bbpA01mup00.4 7314111051.77 %66.36 %
1bbpA01mup00.gp1bbpA01mup00.5 7714114054.61 %55.00 %
5 - 1bbt1 <-> 1pvc1
1bbt101pvc10.gp1bbt101pvc10.5 7916616147.59 %49.07 %
6 - 1ceo <-> 1eceA
1ceo001eceA0.gp1ceo001eceA0.115926427460.23 %58.03 %
1ceo001eceA0.gp1ceo001eceA0.216526427862.50 %59.35 %
1ceo001eceA0.gp1ceo001eceA0.316526427262.50 %60.66 %
1ceo001eceA0.gp1ceo001eceA0.415926429260.23 %54.45 %
1ceo001eceA0.gp1ceo001eceA0.515926430360.23 %52.48 %
7 - 1ceo <-> 1xyzA
1ceo001xyzA0.gp1ceo001xyzA0.3 7123414330.34 %49.65 %
1ceo001xyzA0.gp1ceo001xyzA0.4 7623416532.48 %46.06 %
1ceo001xyzA0.gp1ceo001xyzA0.5 7223421130.77 %34.12 %
8 - 1cnv <-> 1ctn
1cnv001ctn00.gp1cnv001ctn00.3 7523517331.91 %43.35 %
1cnv001ctn00.gp1cnv001ctn00.4 9023522138.30 %40.72 %
1cnv001ctn00.gp1cnv001ctn00.5 9723522741.28 %42.73 %
9 - 1cnv <-> 2ebn
1cnv002ebn00.gp1cnv002ebn00.1 43198 7421.72 %58.11 %
1cnv002ebn00.gp1cnv002ebn00.2 45198 6822.73 %66.18 %
1cnv002ebn00.gp1cnv002ebn00.3 38198 7319.19 %52.05 %
10 - 1ctn <-> 1cnv
1ctn001cnv00.gp1ctn001cnv00.2 4823510320.43 %46.60 %
1ctn001cnv00.gp1ctn001cnv00.3 6323514626.81 %43.15 %
1ctn001cnv00.gp1ctn001cnv00.4 6023515925.53 %37.74 %
1ctn001cnv00.gp1ctn001cnv00.5 6023524825.53 %24.19 %
11 - 1dbqA <-> 1gca
1dbqA01gca00.gp1dbqA01gca00.116225620763.28 %78.26 %
1dbqA01gca00.gp1dbqA01gca00.219425624275.78 %80.17 %
1dbqA01gca00.gp1dbqA01gca00.322325626087.11 %85.77 %
1dbqA01gca00.gp1dbqA01gca00.421225624582.81 %86.53 %
1dbqA01gca00.gp1dbqA01gca00.522525626087.89 %86.54 %
12 - 1dhr <-> 1cydA
1dhr001cydA0.gp1dhr001cydA0.213220922263.16 %59.46 %
1dhr001cydA0.gp1dhr001cydA0.313720921865.55 %62.84 %
1dhr001cydA0.gp1dhr001cydA0.413720921265.55 %64.62 %
1dhr001cydA0.gp1dhr001cydA0.512920922761.72 %56.83 %
13 - 1dhr <-> 1eny
1dhr001eny00.gp1dhr001eny00.213221620961.11 %63.16 %
1dhr001eny00.gp1dhr001eny00.315021621969.44 %68.49 %
1dhr001eny00.gp1dhr001eny00.414721621768.06 %67.74 %
1dhr001eny00.gp1dhr001eny00.514721622068.06 %66.82 %
14 - 1dhr <_> 1xel
1dhr001xel00.gp1dhr001xel00.1 46197 8923.35 %51.69 %
15 - 1eceA <-> 1ceo
1eceA01ceo00.gp1eceA01ceo00.111926416845.08 %70.83 %
1eceA01ceo00.gp1eceA01ceo00.214426427154.55 %53.14 %
1eceA01ceo00.gp1eceA01ceo00.313626427951.52 %48.75 %
1eceA01ceo00.gp1eceA01ceo00.414226427253.79 %52.21 %
1eceA01ceo00.gp1eceA01ceo00.515426428558.33 %54.04 %
16 - 1eceA <-> 1edg
1eceA01edg00.gp1eceA01edg00.111127727640.07 %40.22 %
1eceA01edg00.gp1eceA01edg00.211227728740.43 %39.02 %
1eceA01edg00.gp1eceA01edg00.311727729342.24 %39.93 %
1eceA01edg00.gp1eceA01edg00.411027728839.71 %38.19 %
1eceA01edg00.gp1eceA01edg00.511827729942.60 %39.46 %
17 - 1ecpA <-> 1pbn
1ecpA01pbn00.gp1ecpA01pbn00.2 8922017440.45 %51.15 %
1ecpA01pbn00.gp1ecpA01pbn00.310322017146.82 %60.23 %
1ecpA01pbn00.gp1ecpA01pbn00.410622017448.18 %60.92 %
1ecpA01pbn00.gp1ecpA01pbn00.510622018948.18 %56.08 %
18 - 1edg <-> 1eceA
1edg001eceA0.gp1edg001eceA0.111427727341.16 %41.76 %
1edg001eceA0.gp1edg001eceA0.212427728344.77 %43.82 %
1edg001eceA0.gp1edg001eceA0.311927729042.96 %41.03 %
1edg001eceA0.gp1edg001eceA0.412427731344.77 %39.62 %
1edg001eceA0.gp1edg001eceA0.511327732740.79 %34.56 %
19 - 1eny <-> 1cydA
1eny001cydA0.gp1eny001cydA0.115423821364.71 %72.30 %
1eny001cydA0.gp1eny001cydA0.216623821669.75 %76.85 %
1eny001cydA0.gp1eny001cydA0.318823823278.99 %81.03 %
1eny001cydA0.gp1eny001cydA0.416923821571.01 %78.60 %
1eny001cydA0.gp1eny001cydA0.518623823578.15 %79.15 %
20 - 1fnc <-> 1ndh
1fnc001ndh00.gp1fnc001ndh00.1 9622917441.92 %55.17 %
1fnc001ndh00.gp1fnc001ndh00.212822922355.90 %57.40 %
1fnc001ndh00.gp1fnc001ndh00.313622924359.39 %55.97 %
1fnc001ndh00.gp1fnc001ndh00.413622924359.39 %55.97 %
1fnc001ndh00.gp1fnc001ndh00.513822924360.26 %56.79 %
21 - 1fnc <-> 2pia
1fnc002pia00.gp1fnc002pia00.1 9721617244.91 %56.40 %
1fnc002pia00.gp1fnc002pia00.214321619766.20 %72.59 %
1fnc002pia00.gp1fnc002pia00.314621621067.59 %69.52 %
1fnc002pia00.gp1fnc002pia00.414121621965.28 %64.38 %
1fnc002pia00.gp1fnc002pia00.514121621965.28 %64.38 %
22 - 1gal <-> 3cox
1gal003cox00.gp1gal003cox00.114340142435.66 %33.73 %
1gal003cox00.gp1gal003cox00.214240142235.41 %33.65 %
1gal003cox00.gp1gal003cox00.314340141035.66 %34.88 %
1gal003cox00.gp1gal003cox00.415740143139.15 %36.43 %
1gal003cox00.gp1gal003cox00.518440145845.89 %40.17 %
23 - 1gca <-> 1dbqA
1gca001dbqA0.gp1gca001dbqA0.118125622070.70 %82.27 %
1gca001dbqA0.gp1gca001dbqA0.222425626287.50 %85.50 %
1gca001dbqA0.gp1gca001dbqA0.321625625084.38 %86.40 %
1gca001dbqA0.gp1gca001dbqA0.421225625082.81 %84.80 %
1gca001dbqA0.gp1gca001dbqA0.521825626285.16 %83.21 %
24 - 1hbq <-> 1bbpA
1hbq001bbpA0.gp1hbq001bbpA0.1 7515211749.34 %64.10 %
1hbq001bbpA0.gp1hbq001bbpA0.2 9015213059.21 %69.23 %
1hbq001bbpA0.gp1hbq001bbpA0.3 9015213859.21 %65.22 %
1hbq001bbpA0.gp1hbq001bbpA0.4 9115214559.87 %62.76 %
1hbq001bbpA0.gp1hbq001bbpA0.5 9115214559.87 %62.76 %
25 - 1hbq <-> 1mup
1hbq001mup00.gp1hbq001mup00.2 7214012151.43 %59.50 %
1hbq001mup00.gp1hbq001mup00.3 7214012951.43 %55.81 %
1hbq001mup00.gp1hbq001mup00.4 7914014556.43 %54.48 %
1hbq001mup00.gp1hbq001mup00.5 7914015656.43 %50.64 %
26 - 1hbq <-> 1obpA
1hbq001obpA0.gp1hbq001obpA0.4 4511013940.91 %32.37 %
1hbq001obpA0.gp1hbq001obpA0.5 5611014350.91 %39.16 %
27 - 1httA <-> 1sesA
1httA01sesA0.gp1httA01sesA0.411822023153.64 %51.08 %
28 - 1mup <-> 1bbpA
1mup001bbpA0.gp1mup001bbpA0.1 8214111558.16 %71.30 %
1mup001bbpA0.gp1mup001bbpA0.2 8014110656.74 %75.47 %
1mup001bbpA0.gp1mup001bbpA0.3 8614111760.99 %73.50 %
1mup001bbpA0.gp1mup001bbpA0.4 8414111559.57 %73.04 %
1mup001bbpA0.gp1mup001bbpA0.5 9114113064.54 %70.00 %
29 - 1mup <-> 1hbq
1mup001hbq00.gp1mup001hbq00.1 6514012346.43 %52.85 %
1mup001hbq00.gp1mup001hbq00.2 5514011239.29 %49.11 %
1mup001hbq00.gp1mup001hbq00.3 6514011846.43 %55.08 %
1mup001hbq00.gp1mup001hbq00.4 7214012151.43 %59.50 %
1mup001hbq00.gp1mup001hbq00.5 9614015468.57 %62.34 %
30 - 1ndh <-> 1fnc
1ndh001fnc00.gp1ndh001fnc00.111422919749.78 %57.87 %
1ndh001fnc00.gp1ndh001fnc00.212422919954.15 %62.31 %
1ndh001fnc00.gp1ndh001fnc00.314722923864.19 %61.76 %
1ndh001fnc00.gp1ndh001fnc00.415222924066.38 %63.33 %
31 - 1obpA <-> 1hbq
1obpA01hbq00.gp1obpA01hbq00.2 54110 8649.09 %62.79 %
1obpA01hbq00.gp1obpA01hbq00.3 55110 8950.00 %61.80 %
1obpA01hbq00.gp1obpA01hbq00.4 6011012854.55 %46.88 %
1obpA01hbq00.gp1obpA01hbq00.5 6011014454.55 %41.67 %
32 - 1pea <-> 2dri
1pea002dri00.gp1pea002dri00.4 9725523438.04 %41.45 %
1pea002dri00.gp1pea002dri00.5 9925522638.82 %43.81 %
33 - 1pot <-> 1sbp
1pot001sbp00.gp1pot001sbp00.1 6626817724.63 %37.29 %
1pot001sbp00.gp1pot001sbp00.2 7426824127.61 %30.71 %
1pot001sbp00.gp1pot001sbp00.3 8526824531.72 %34.69 %
1pot001sbp00.gp1pot001sbp00.4 8626826232.09 %32.82 %
1pot001sbp00.gp1pot001sbp00.5 9126826833.96 %33.96 %
34 - 1ptvA <-> 1ytw
1ptvA01ytw00.gp1ptvA01ytw00.112924620752.44 %62.32 %
1ptvA01ytw00.gp1ptvA01ytw00.212924620752.44 %62.32 %
1ptvA01ytw00.gp1ptvA01ytw00.313324620754.07 %64.25 %
1ptvA01ytw00.gp1ptvA01ytw00.413324620754.07 %64.25 %
1ptvA01ytw00.gp1ptvA01ytw00.513324620754.07 %64.25 %
35 - 1pvc1 <-> 1bbt1
1pvc101bbt10.gp1pvc101bbt10.2 6716610340.36 %65.05 %
1pvc101bbt10.gp1pvc101bbt10.3 9016617754.22 %50.85 %
1pvc101bbt10.gp1pvc101bbt10.4 9016618454.22 %48.91 %
1pvc101bbt10.gp1pvc101bbt10.5 9016618554.22 %48.65 %
36 - 1sbp <-> 1pot
1sbp001pot00.gp1sbp001pot00.212126824745.15 %48.99 %
1sbp001pot00.gp1sbp001pot00.311826822844.03 %51.75 %
1sbp001pot00.gp1sbp001pot00.412226825445.52 %48.03 %
1sbp001pot00.gp1sbp001pot00.512026826144.78 %45.98 %
37 - 1tca <-> 1broA
1tca001broA0.gp1tca001broA0.3 3319410917.01 %30.28 %
1tca001broA0.gp1tca001broA0.4 4719411124.23 %42.34 %
1tca001broA0.gp1tca001broA0.5 4719411124.23 %42.34 %
38 - 1tca <-> 1ede
1tca001ede00.gp1tca001ede00.5 6620211732.67 %56.41 %
39 - 1vhrA <-> 1ptvA
1vhrA01ptvA0.gp1vhrA01ptvA0.1 26163 2615.95 % 100.00 %
1vhrA01ptvA0.gp1vhrA01ptvA0.5 3516314321.47 %24.48 %
40 - 1vid <-> 1xvaA
1vid001xvaA0.gp1vid001xvaA0.4 7716813545.83 %57.04 %
1vid001xvaA0.gp1vid001xvaA0.5 8316816349.40 %50.92 %
41 - 1vid <-> 2admA
1vid002admA0.gp1vid002admA0.2 6014615541.10 %38.71 %
1vid002admA0.gp1vid002admA0.4 6214614142.47 %43.97 %
1vid002admA0.gp1vid002admA0.5 6214615642.47 %39.74 %
42 - 1ytw <-> 1ptvA
1ytw001ptvA0.gp1ytw001ptvA0.213224621453.66 %61.68 %
1ytw001ptvA0.gp1ytw001ptvA0.314924623160.57 %64.50 %
1ytw001ptvA0.gp1ytw001ptvA0.412524622050.81 %56.82 %
1ytw001ptvA0.gp1ytw001ptvA0.515224624961.79 %61.04 %
43 - 2ebn <-> 1cnv
2ebn001cnv00.gp2ebn001cnv00.5 5519823127.78 %23.81 %
44 - 2ebn <-> 1ctn
2ebn001ctn00.gp2ebn001ctn00.2 6723312228.76 %54.92 %
2ebn001ctn00.gp2ebn001ctn00.3 6923322729.61 %30.40 %
2ebn001ctn00.gp2ebn001ctn00.4 6923324129.61 %28.63 %
2ebn001ctn00.gp2ebn001ctn00.5 6923325929.61 %26.64 %
45 - 2ebn <-> 1nar
2ebn001nar00.gp2ebn001nar00.3 6522513328.89 %48.87 %
46 - 2gdm <-> 1mbd
2gdm001mbd00.gp2gdm001mbd00.110214413170.83 %77.86 %
2gdm001mbd00.gp2gdm001mbd00.211614414480.56 %80.56 %
2gdm001mbd00.gp2gdm001mbd00.310914412475.69 %87.90 %
2gdm001mbd00.gp2gdm001mbd00.410814413375.00 %81.20 %
2gdm001mbd00.gp2gdm001mbd00.511414414479.17 %79.17 %
47 - 2gdm <-> 3sdhA
2gdm003sdhA0.gp2gdm003sdhA0.1 9213513668.15 %67.65 %
2gdm003sdhA0.gp2gdm003sdhA0.2 9713513771.85 %70.80 %
2gdm003sdhA0.gp2gdm003sdhA0.3 8813512365.19 %71.54 %
2gdm003sdhA0.gp2gdm003sdhA0.4 9613513271.11 %72.73 %
2gdm003sdhA0.gp2gdm003sdhA0.5 9613513771.11 %70.07 %
48 - 2mnr <-> 4enl
2mnr004enl00.gp2mnr004enl00.114728527151.58 %54.24 %
2mnr004enl00.gp2mnr004enl00.216528529457.89 %56.12 %
2mnr004enl00.gp2mnr004enl00.317228530860.35 %55.84 %
2mnr004enl00.gp2mnr004enl00.417428530861.05 %56.49 %
2mnr004enl00.gp2mnr004enl00.517228532960.35 %52.28 %
49 - 2pia <-> 1fnc
2pia001fnc00.gp2pia001fnc00.513921621464.35 %64.95 %
50 - 2por <-> 2omf
2por002omf00.gp2por002omf00.2 7126227427.10 %25.91 %
2por002omf00.gp2por002omf00.3 7626227629.01 %27.54 %
51 - 3cox <-> 1gal
3cox001gal00.gp3cox001gal00.1 38401 51 9.48 %74.51 %
3cox001gal00.gp3cox001gal00.218140142145.14 %42.99 %
3cox001gal00.gp3cox001gal00.318240142445.39 %42.92 %
3cox001gal00.gp3cox001gal00.419540145748.63 %42.67 %
3cox001gal00.gp3cox001gal00.520940146052.12 %45.43 %
52 - 4enl <-> 2mnr
4enl002mnr00.gp4enl002mnr00.1 74285 9225.96 %80.43 %
4enl002mnr00.gp4enl002mnr00.2 74285 9225.96 %80.43 %
4enl002mnr00.gp4enl002mnr00.3 69285 8624.21 %80.23 %
4enl002mnr00.gp4enl002mnr00.4 65285 7722.81 %84.42 %
4enl002mnr00.gp4enl002mnr00.5 65285 7722.81 %84.42 %


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