NPP Database Hits

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Note:

Database Hits

are in the order:

ProtHum

mRNAHum

ChrHum

GSProtHum

GSmRNAHum

ESTHum

+ indicates a Perfect match
~ indicates that the best hit had a mismatch
- indicates that no hit was found (where up to one mismatch was allowed)

About the table

Peptide

SYFPEITHI Definition

Database Hits

Top Hit Details

Information

AAMLDTVVFK

Proteasome-associated pad1 301-310

ProtHum:ref|NP_005796.1|
MATCHES:10/10 POS:301-310
26S proteasome-associated pad1 homolog [Homo sapiens]

Supports expression at the protein level

AAPAYSRAL

HSP27 69-77

ProtHum:ref|NP_001531.1|
MATCHES:9/9 POS:69-77
heat shock 27kD protein 1 [Homo sapiens]

Supports expression at the protein level

AASKERSGVSL

Histone H1 48-58

ProtHum:ref|NP_005311.1|
MATCHES:11/11 POS:50-60
H1 histone family, member 3 [Homo sapiens]
ProtHum:ref|NP_005310.1|
MATCHES:11/11 POS:49-59
H1 histone family, member 2 [Homo sapiens]
ProtHum:ref|NP_005312.1|
MATCHES:11/11 POS:49-59
H1 histone family, member 4 [Homo sapiens]

Supports expression at the protein level

AAVDAGMAM

Pyrimidine binding protein 168-176

ProtHum:ref|NP_002810.1|
MATCHES:9/9 POS:169-177
polypyrimidine tract binding protein (heterogeneous nuclear ribonucleoprotein I) [Homo sapiens]

Supports expression at the protein level

AEDKENYKKF

HSP90 alpha 427-436

ProtHum:ref|NP_031381.1|
MATCHES:10/10 POS:420-429
heat shock 90kD protein 1, beta; Heat-shock 90kD protein-1, beta [Homo sapiens]
ProtHum:ref|NP_005339.1|
MATCHES:10/10 POS:428-437
heat shock 90kD protein 1, alpha [Homo sapiens]

Supports expression at the protein level

AEGIVTGQY

Unknown

nr:gi|1171662|sp|P42436|NASE_BACSU
MATCHES:8/9 POS:57-65
ASSIMILATORY NITRITE REDUCTASE [NAD(P)H] SMALL SUBUNIT pir||I40030 probable dioxygenase (EC 1.14.12.-) Rieske iron-sulfur component [similarity] - Bacillus subtilis dbj|BAA06355.1| (D30689) subunit of nitrite reductase [Bacillus subtilis] dbj|BAA08963.1| (D50453) subunit of nitrite reductase [Bacillus subtilis] emb|CAB12123.1| (Z99105) assimilatory nitrite reductase (subunit) [Bacillus subtilis]

AEIPGEIAL

Unknown

ChrHum:ref|NT_005194.3|Hs2_5351
MATCHES:8/9 POS:1644288-1644314(-)
Homo sapiens chromosome 2 working draft sequence segment
ChrHum:ref|NT_026252.1|Hs2_26419
MATCHES:8/9 POS:145243-145269(+)
Homo sapiens chromosome 2 working draft sequence segment
ChrHum:ref|NT_023921.3|Hs9_24077
MATCHES:8/9 POS:889419-889445(+)
Homo sapiens chromosome 9 working draft sequence segment
nt:emb|AL133247.1|CNS01DUK
MATCHES:8/9 POS:40665-40691(+)
BAC sequence from the SPG4 candidate region at 2p21-2p22 BAC 11B22 of CITB_978_SKB library from chromosome 2 of Homo sapiens (Human), complete sequence
nt:emb|AL121654.1|CNS01DS4
MATCHES:8/9 POS:145243-145269(+)
BAC sequence from the SPG4 candidate region at 2p21-2p22 BAC 26F21 of CITB_978_SKB library from chromosome 2 of Homo sapiens (Human), complete sequence

AEIPRTFKY

Unknown

ChrHum:ref|NT_024880.3|Hs17_25036
MATCHES:8/9 POS:87975-88001(+)
Homo sapiens chromosome 17 working draft sequence segment
ChrHum:ref|NT_023935.3|Hs9_24091
MATCHES:8/9 POS:1739027-1739053(-)
Homo sapiens chromosome 9 working draft sequence segment
ChrHum:ref|NT_008653.3|Hs10_8810
MATCHES:8/9 POS:1530797-1530823(-)
Homo sapiens chromosome 10 working draft sequence segment

AEIPTRVNY

Unknown

N/A

AEMGKFKFSY

Unknown

N/A

AEMGKGSFKY

Elongation factor Tu 48-57

ProtHum:ref|NP_001393.1|
MATCHES:10/10 POS:47-56
eukaryotic translation elongation factor 1 alpha 1 [Homo sapiens]
ProtHum:ref|NP_001949.1|
MATCHES:10/10 POS:47-56
eukaryotic translation elongation factor 1 alpha 2 [Homo sapiens]

Supports expression at the protein level

AEVDKVTGRF

40S ribosomal protein S21 37-46

ProtHum:ref|NP_001015.1|
MATCHES:10/10 POS:37-46
ribosomal protein S21 [Homo sapiens]

Supports expression at the protein level
Potential splice site or SNP

AEVDKVTGY

Unknown

ProtHum:ref|NP_001015.1|
MATCHES:8/9 POS:37-44
ribosomal protein S21 [Homo sapiens]

AGDRTFQKW

MHC class I 260-268

ProtHum:ref|NP_005505.1|
MATCHES:9/9 POS:260-268
major histocompatibility complex, class I, B [Homo sapiens]
ProtHum:ref|NP_002107.1|
MATCHES:8/9 POS:260-268
major histocompatibility complex, class I, A [Homo sapiens]
ProtHum:ref|NP_002108.1|
MATCHES:8/9 POS:260-268
major histocompatibility complex, class I, C [Homo sapiens]

Supports expression at the protein level

AHSTIMPRL

MCM4 (DNA repl. lic. factor) 694-702

ChrHum:ref|NT_017431.3|Hs8_17587
MATCHES:9/9 POS:321741-321767(+)
Homo sapiens chromosome 8 working draft sequence segment
nr:gi|2754697|gb|AAC52018.1|
MATCHES:9/9 POS:694-702
(U63630) MCM4 [Homo sapiens]
nr:gi|1705520|sp|P33991|MCM4_HUMAN
MATCHES:9/9 POS:694-702
DNA REPLICATION LICENSING FACTOR MCM4 (CDC21 HOMOLOG) (P1-CDC21) pir||S65954 replication licensing factor MCM4 - human
nr:gi|940536|emb|CAA52801.1|
MATCHES:9/9 POS:754-762
(X74794) P1 Cdc21 protein [Homo sapiens] prf||2115257A Cdc21-like protein [Homo sapiens]

Supports expression at the protein level

ALFPQLVIL

Unknown

ChrHum:ref|NT_004988.3|Hs1_5145
MATCHES:8/9 POS:727133-727159(+)
Homo sapiens chromosome 1 working draft sequence segment
ChrHum:ref|NT_024524.3|Hs13_24680
MATCHES:8/9 POS:1862486-1862509(-)
Homo sapiens chromosome 13 working draft sequence segment
ChrHum:ref|NT_009107.3|Hs11_9264
MATCHES:8/9 POS:1069066-1069089(+)
Homo sapiens chromosome 11 working draft sequence segment
nt:emb|AL161894.12|AL161894
MATCHES:8/9 POS:15198-15221(+)
Human DNA sequence from clone RP11-23B16 on chromosome 13 Contains an STS and a GSS, complete sequence [Homo sapiens]

ALLAVGATK

pmel17/gp100 17-25

ProtHum:ref|NP_008859.1|
MATCHES:9/9 POS:17-25
silver (mouse homolog) like; Melanocyte protein mel 17; Pmel 17; Pmel17; silver (mouse homolog)-like; Silver, mouse, homolog of [Homo sapiens]

Supports expression at the protein level

ALLPPINIL

Unknown

ChrHum:ref|NT_009891.3|Hs13_10048
MATCHES:8/9 POS:4372622-4372645(-)
Homo sapiens chromosome 13 working draft sequence segment
ChrHum:ref|NT_024376.3|Hs12_24532
MATCHES:8/9 POS:290703-290726(-)
Homo sapiens chromosome 12 working draft sequence segment
ChrHum:ref|NT_019501.3|Hs9_19657
MATCHES:8/9 POS:1276242-1276268(+)
Homo sapiens chromosome 9 working draft sequence segment
nr:gi|3913221|sp|O07345|CHLD_SYNP7
MATCHES:8/9 POS:57-65
MAGNESIUM-CHELATASE SUBUNIT CHLD (MG-PROTOPORPHYRIN IX CHELATASE) (MG-CHELATASE SUBUNIT D) dbj|BAA20346.1| (AB003135) magnesium-chelatase subunit [Synechococcus sp.]

ALNELLQHV

Talin (mouse) 777-785

ProtHum:ref|NP_006280.1|
MATCHES:9/9 POS:777-785
talin [Homo sapiens]

Supports expression at the protein level

ALPHAILRL

beta actin 170-178

ProtHum:ref|NP_001092.1|
MATCHES:9/9 POS:170-178
beta actin; beta cytoskeletal actin [Homo sapiens]
ProtHum:ref|NP_001605.1|
MATCHES:9/9 POS:170-178
actin, gamma 1 propeptide; cytoskeletal gamma-actin; actin, cytoplasmic 2 [Homo sapiens]
ProtHum:ref|NP_005150.1|
MATCHES:8/9 POS:172-180
actin, alpha, cardiac muscle precursor [Homo sapiens]

Supports expression at the protein level

ALPPPPPPP

Homeobox protein HOX-B2 77-85

ProtHum:ref|NP_002136.1|
MATCHES:9/9 POS:77-85
homeo box B2; Homeo box-B2 [Homo sapiens]
ProtHum:ref|NP_055160.1|
MATCHES:8/9 POS:1261-1268
endocrine regulator [Homo sapiens]
ProtHum:ref|NP_003922.1|
MATCHES:8/9 POS:423-430
WAS protein family, member 1; WASP family Verprolin-homologous protein; scar, dictyostelium, homology of, 1 [Homo sapiens]

Supports expression at the protein level

ALSDHHIYL

Fructose-biphosphate aldolase 115-123

ProtHum:ref|NP_000025.1|
MATCHES:9/9 POS:216-224
aldolase A; fructose-bisphosphate aldolase; Aldolase A, fructose-bisphosphatase [Homo sapiens]
ProtHum:ref|NP_005156.1|
MATCHES:8/9 POS:216-224
aldolase C, fructose-bisphosphate; Aldolase C, fructose-bisphosphatase [Homo sapiens]

Supports expression at the protein level

ALSNLEVKL

Unknown

ChrHum:ref|NT_004302.3|Hs1_4459
MATCHES:8/9 POS:2544774-2544800(-)
Homo sapiens chromosome 1 working draft sequence segment
ChrHum:ref|NT_006780.3|Hs5_6937
MATCHES:8/9 POS:18910-18936(-)
Homo sapiens chromosome 5 working draft sequence segment
ChrHum:ref|NT_010428.3|Hs16_10585
MATCHES:8/9 POS:596853-596879(+)
Homo sapiens chromosome 16 working draft sequence segment
nr:gi|7500797|pir||T34262
MATCHES:8/9 POS:158-165
hypothetical protein F38E1.2 - Caenorhabditis elegans gb|AAA83479.1| (U41996) Similar to transposon reverse transcriptase [Caenorhabditis elegans]
nr:gi|14574445|gb|AAK68554.1|AC084158_2
MATCHES:8/9 POS:140-147
(AC084158) Hypothetical protein Y69A2AR.10 [Caenorhabditis elegans]
nr:gi|7298689|gb|AAF53902.1|
MATCHES:8/9 POS:61-69
(AE003667) CG17472 gene product [Drosophila melanogaster]
nt:ref|NM_031471.1|
MATCHES:9/9 POS:1069-1095(+)
Homo sapiens hypothetical protein MGC10966 (MGC10966), mRNA
nt:gb|BC004347.1|BC004347
MATCHES:9/9 POS:1069-1095(+)
Homo sapiens, Similar to hypothetical protein FLJ20116, clone MGC:10966, mRNA, complete cds
nt:dbj|AB044869.1|AB044869
MATCHES:8/9 POS:21-47(-)
Equus caballus DNA, microsatellite TKY369

Supports expression of a protein that is documented as hypothetical
Extension/correction of translation

APAPPPKPM

40S ribosomal protein S26 107-115

ProtHum:ref|NP_001020.1|
MATCHES:9/9 POS:107-115
ribosomal protein S26 [Homo sapiens]

Supports expression at the protein level

APDTRPAP

MUC1 (VNTR) 141-148

ProtHum:ref|NP_002447.1|
MATCHES:8/8 POS:181-188
mucin 1, transmembrane [Homo sapiens]
ProtHum:ref|NP_002447.1|
MATCHES:7/8 POS:141-148
mucin 1, transmembrane [Homo sapiens]
ProtHum:ref|NP_002447.1|
MATCHES:7/8 POS:161-168
mucin 1, transmembrane [Homo sapiens]

Supports expression at the protein level

APRALLLLL

HLA-Cw7 signal sequence 5-13

ProtHum:ref|NP_002108.1|
MATCHES:9/9 POS:5-13
major histocompatibility complex, class I, C [Homo sapiens]
ProtHum:ref|NP_061823.1|
MATCHES:8/9 POS:2-10
major histocompatibility complex, class I, F [Homo sapiens]
ProtHum:ref|NP_068739.1|
MATCHES:8/9 POS:2-10
secretin preproprotein [Homo sapiens]

Supports expression at the protein level

APRASRPSL

Unknown

mRNAHum:gi|7662075|ref|NM_014686.1|
MATCHES:8/9 POS:3987-4010(+)
Homo sapiens KIAA0355 gene product (KIAA0355), mRNA
mRNAHum:gi|8922600|ref|NM_018184.1|
MATCHES:8/9 POS:230-256(-)
Homo sapiens hypothetical protein FLJ10702 (FLJ10702), mRNA
ChrHum:ref|NT_011597.3|HsX_11754
MATCHES:9/9 POS:466489-466515(+)
Homo sapiens chromosome X working draft sequence segment
ChrHum:ref|NT_011300.2|Hs19_11457
MATCHES:8/9 POS:32036-32062(+)
Homo sapiens chromosome 19 working draft sequence segment
ChrHum:ref|NT_025812.2|Hs9_25968
MATCHES:8/9 POS:221283-221306(+)
Homo sapiens chromosome 9 working draft sequence segment
nt:gb|U52112.1|HSU52112
MATCHES:9/9 POS:124071-124097(-)
Homo sapiens Xq28 genomic DNA in the region of the L1CAM locus containing the genes for neural cell adhesion molecule L1 (L1CAM), arginine-vasopressin receptor (AVPR2), C1 p115 (C1), ARD1 N-acetyltransferase related protein (TE2), renin-binding protein>
nt:gb|L20010.1|HUMHCF1A
MATCHES:9/9 POS:19-45(+)
Human HCF1 gene related mRNA sequence
nt:emb|X84221.1|HSHCFC1
MATCHES:9/9 POS:1606-1632(+)
H.sapiens HCFC1 gene

Supports expression at the protein level

APRQPGLMA

Unknown

ProtHum:ref|NP_057223.1|
MATCHES:9/9 POS:49-57
16.7Kd protein [Homo sapiens]

Supports expression at the protein level

APRTLVLLL

HLA-A2 signal sequence 5-13

ProtHum:ref|NP_002118.1|
MATCHES:8/9 POS:5-13
HLA-G histocompatibility antigen, class I, G; HLA-G histocompatibility antigen, class I; major histocompatibility complex, class I, G [Homo sapiens]
ChrHum:ref|NT_009038.3|Hs11_9195
MATCHES:9/9 POS:905312-905338(+)
Homo sapiens chromosome 11 working draft sequence segment
ChrHum:ref|NT_007592.3|Hs6_7749
MATCHES:8/9 POS:6030650-6030676(-)
Homo sapiens chromosome 6 working draft sequence segment
ChrHum:ref|NT_007592.3|Hs6_7749
MATCHES:8/9 POS:5945306-5945332(-)
Homo sapiens chromosome 6 working draft sequence segment
nr:gi|1407575|dbj|BAA07530.1|
MATCHES:9/9 POS:5-13
(D38525) The nucleotide sequence of A*0215N is the same as that of A*0207 except for a single nucleotide substitution which resulted in a stop codon in exon4.~truncated molecule [Homo sapiens]
nr:gi|8977868|emb|CAB95730.1|
MATCHES:9/9 POS:5-13
(AJ278501) MHC class I antigen [Homo sapiens]
nr:gi|6996449|emb|CAB64340.2|
MATCHES:9/9 POS:5-13
(AJ251960) human leucocyte antigen A [Homo sapiens]

Supports expression at the protein level

APRTVALTA

HLA-DP signal sequence 9-17

ProtHum:ref|NP_002112.1|
MATCHES:9/9 POS:9-17
major histocompatibility complex, class II, DP beta 1 [Homo sapiens]

Supports expression at the protein level

APRTVALTAL

HLA-DP� 9-18

ProtHum:ref|NP_002112.1|
MATCHES:10/10 POS:9-18
major histocompatibility complex, class II, DP beta 1 [Homo sapiens]

Supports expression at the protein level

APTGDLPRA

LMP-2 6-14

ProtHum:ref|NP_002791.1|
MATCHES:9/9 POS:6-14
proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional protease 2); Proteasome subunit, beta type, 9 [Homo sapiens]

Supports expression at the protein level

ARDDTHYLL

PM-SCL 437-445

ProtHum:ref|NP_002676.1|
MATCHES:9/9 POS:437-445
polymyositis/scleroderma autoantigen 2 (100kD); autoantigen PM-SCL [Homo sapiens]

Supports expression at the protein level

ARDETEFYL

60S ribosomal protein L35a 35-43

ProtHum:ref|NP_000987.1|
MATCHES:9/9 POS:35-43
ribosomal protein L35a [Homo sapiens]

Supports expression at the protein level

ARLFGIRAK

60S ribosomal protein L13 188-196

ProtHum:ref|NP_000968.1|
MATCHES:9/9 POS:189-197
ribosomal protein L13 [Homo sapiens]

Supports expression at the protein level

ARLQTALL

Histone (core histone; rat) 188-196

ProtHum:ref|NP_057726.1|
MATCHES:8/8 POS:739-746
beta V spectrin [Homo sapiens]
ProtHum:ref|NP_002981.1|
MATCHES:8/8 POS:2-9
small inducible cytokine subfamily A (Cys-Cys), member 22; Small inducible cytokine, subfamily A, member 22 [Homo sapiens]

Supports expression at the protein level

ASFDKAKLK

Thymosin beta-10 9-20

ProtHum:ref|NP_066926.1|
MATCHES:9/9 POS:11-19
thymosin, beta 10 [Homo sapiens]

Supports expression at the protein level

ASFDKAKLKK

Thymosin beta-10 9-18

ProtHum:ref|NP_066926.1|
MATCHES:10/10 POS:11-20
thymosin, beta 10 [Homo sapiens]

Supports expression at the protein level

ASSSYNMVI

Guanine nucleotide binding protein G

ProtHum:ref|NP_000507.1|
MATCHES:9/9 POS:249-257
guanine nucleotide binding protein (G protein), alpha stimulating activity polypeptide 1 [Homo sapiens]
ProtHum:ref|NP_002062.1|
MATCHES:8/9 POS:236-244
guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type; Guanine nucleotide-binding protein, alpha-subunit, olfactory type; guanine nucleotide binding protein (G protein), alpha stimulating activity polypeptide, olfactory type [Homo sapiens]

Supports expression at the protein level

ATAGDGLIELRK

Prohibitin 229-240

ProtHum:ref|NP_002625.1|
MATCHES:12/12 POS:229-240
prohibitin [Homo sapiens]

Supports expression at the protein level

ATDFKFAMY

Cyclin D2 189-197

ProtHum:ref|NP_001750.1|
MATCHES:9/9 POS:189-197
cyclin D2 [Homo sapiens]

Supports expression at the protein level
Spans splice site

ATGPSIKI

Guanine nucleotide binding protein

ProtHum:ref|NP_006089.1|
MATCHES:8/8 POS:251-258
guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1; protein homologous to chicken B complex protein, guanine nucleotide binding [Homo sapiens]

Supports expression at the protein level

AVAAVAARR

Glucosidase II 3-11

ProtHum:ref|NP_055425.1|
MATCHES:9/9 POS:3-11
KIAA0088 protein [Homo sapiens]
ProtHum:ref|NP_002242.2|
MATCHES:8/9 POS:253-261
potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1; Kv9.1 [Homo sapiens]

Supports expression at the protein level

AVDPGGMYS

Unknown

ChrHum:ref|NT_007189.3|Hs6_7346
MATCHES:8/9 POS:1099774-1099800(+)
Homo sapiens chromosome 6 working draft sequence segment
nt:emb|AL513015.6|AL513015
MATCHES:8/9 POS:3534-3560(-)
Human DNA sequence from clone RP1-52M20 on chromosome 6p22.1-22.3, complete sequence [Homo sapiens]

AVILPPLSPYFK

EST

ProtHum:ref|NP_004533.1|
MATCHES:12/12 POS:29-40
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3 (9kD, B9) [Homo sapiens]

Supports expression at the protein level

AVMKPEAEKRK

Unknown

N/A

AVPDEIPPL

HSP90 beta 702-710

ProtHum:ref|NP_031381.1|
MATCHES:9/9 POS:703-711
heat shock 90kD protein 1, beta; Heat-shock 90kD protein-1, beta [Homo sapiens]

Supports expression at the protein level

AYKKQFSQY

60S ribosomal protein L5 217-225

ProtHum:ref|NP_000960.1|
MATCHES:9/9 POS:218-226
ribosomal protein L5 [Homo sapiens]

Supports expression at the protein level

AYVHMVTHF

TEGT protein 45-53

ProtHum:ref|NP_003208.1|
MATCHES:9/9 POS:45-53
testis enhanced gene transcript [Homo sapiens]

Supports expression at the protein level

DADKYAVTV

MOMP 345-353

nr:gi|4884601|gb|AAD31745.1|
MATCHES:9/9 POS:92-100
(AF118870) major outer membrane protein precursor VD4 region [Chlamydia trachomatis]
nr:gi|4894564|gb|AAD32547.1|
MATCHES:9/9 POS:89-97
(AF118879) major outer membrane protein precursor VD4 region [Chlamydia trachomatis]
nr:gi|4757611|gb|AAD29101.1|
MATCHES:9/9 POS:325-333
(M73044) outer mambrane protein [Chlamydia muridarum]

Human pathogen

DAHIYLNHI

Thymidylate synthase 253-261

ProtHum:ref|NP_001062.1|
MATCHES:9/9 POS:254-262
thymidylate synthetase; Thymidylate synthase [Homo sapiens]

Supports expression at the protein level

DAYALNHTL

Octamer binding factor I 243-251

ProtHum:ref|NP_006226.1|
MATCHES:9/9 POS:243-251
POU domain, class 2, associating factor 1 [Homo sapiens]

Supports expression at the protein level

DAYRRIHSL

C6 1A protein 220-228

ProtHum:ref|NP_077308.1|
MATCHES:9/9 POS:245-253
c6.1A [Homo sapiens]

Supports expression at the protein level
Spans splice site

DEAPAVISY

Unknown

N/A

DEFIGVAIY

Unknown

N/A

DEIGVIDLY

Unknown

N/A

DENPLVKQY

Unknown

N/A

DEVGIVTKY

Unknown

N/A

DEVPDLERKY

Unknown

ESTHum:gb|AA057392.1|AA057392
MATCHES:9/10 POS:56-85(-)
zl93b06.s1 Stratagene corneal stroma (#937222) Homo sapiens cDNA clone IMAGE:512147 3' similar to TR:G189067 G189067 NAP ;

DEVTPQPQLV

Unknown

N/A

DHCVAHKL

Cytochrome C reductase 66-73

ProtHum:ref|NP_005995.1|
MATCHES:8/8 POS:79-86
ubiquinol-cytochrome c reductase hinge protein [Homo sapiens]

Supports expression at the protein level

DIPENVDITL

60S ribosomal protein L9 11-20

ProtHum:ref|XP_012407.1|
MATCHES:10/10 POS:11-20
similar to 60S RIBOSOMAL PROTEIN L9 (H. sapiens) [Homo sapiens]
ProtHum:ref|XP_011151.1|
MATCHES:10/10 POS:11-20
ribosomal protein L9 [Homo sapiens]
ProtHum:ref|NP_000652.1|
MATCHES:9/10 POS:11-20
ribosomal protein L9 [Homo sapiens]

Supports expression at the protein level

DIREEKASW

Unknown

ProtHum:ref|NP_067629.1|
MATCHES:8/9 POS:518-526
ring finger protein 21, interferon-responsive [Homo sapiens]
ChrHum:ref|NT_009181.3|Hs11_9338
MATCHES:9/9 POS:675198-675224(-)
Homo sapiens chromosome 11 working draft sequence segment
ChrHum:ref|NT_009181.3|Hs11_9338
MATCHES:8/9 POS:623858-623884(+)
Homo sapiens chromosome 11 working draft sequence segment
nr:gi|12407383|gb|AAG53480.1|AF220026_1
MATCHES:9/9 POS:162-170
(AF220026) tripartite motif protein TRIM5 isoform beta [Homo sapiens]
nr:gi|12407389|gb|AAG53483.1|AF220029_1
MATCHES:9/9 POS:162-170
(AF220029) tripartite motif protein TRIM5 isoform epsilon [Homo sapiens]
nr:gi|12407387|gb|AAG53482.1|AF220028_1
MATCHES:9/9 POS:162-170
(AF220028) tripartite motif protein TRIM5 isoform delta [Homo sapiens]

Supports expression at the protein level of paralogous genes

DIREEKTSW

Unknown

ProtHum:ref|NP_067629.1|
MATCHES:9/9 POS:518-526
ring finger protein 21, interferon-responsive [Homo sapiens]

Supports expression at the protein level of paralogous genes

DIRQERTAW

Staf-50 164-172

ProtHum:ref|NP_006065.1|
MATCHES:9/9 POS:164-172
stimulated trans-acting factor (50 kDa) [Homo sapiens]

Supports expression at the protein level

DLERKVESL

Vimentin 218-226

ProtHum:ref|NP_003371.1|
MATCHES:9/9 POS:219-227
vimentin [Homo sapiens]
ProtHum:ref|NP_002046.1|
MATCHES:8/9 POS:185-193
glial fibrillary acidic protein [Homo sapiens]
ProtHum:ref|NP_004683.1|
MATCHES:8/9 POS:208-216
internexin neuronal intermediate filament protein, alpha; neurofilament-66, tax-binding protein; neurofilament 5 (66kD) [Homo sapiens]

Supports expression at the protein level

DLKQKNEL

Unknown

ChrHum:ref|NT_005370.3|Hs2_5527
MATCHES:7/8 POS:1453140-1453163(-)
Homo sapiens chromosome 2 working draft sequence segment
ChrHum:ref|NT_005772.3|Hs3_5929
MATCHES:7/8 POS:474233-474256(+)
Homo sapiens chromosome 3 working draft sequence segment
ChrHum:ref|NT_022671.3|Hs3_22827
MATCHES:7/8 POS:127910-127933(+)
Homo sapiens chromosome 3 working draft sequence segment
nr:gi|12057035|emb|CAC19891.1|
MATCHES:7/8 POS:872-879
(AJ011301) toxin B [Clostridium difficile]
nr:gi|10504244|gb|AAG18011.1|AF217292_1
MATCHES:7/8 POS:872-879
(AF217292) cytotoxin B [Clostridium difficile]
nr:gi|7476000|pir||S70172
MATCHES:7/8 POS:872-879
toxin B - Clostridium difficile emb|CAA80815.1| (Z23277) toxin B [Clostridium difficile]
ESTHum:gb|BI039371.1|BI039371
MATCHES:8/8 POS:243-266(+)
IL3-NT0280-260101-424-G08 NT0280 Homo sapiens cDNA
ESTHum:dbj|AV727404.1|AV727404
MATCHES:8/8 POS:83-106(+)
AV727404 HTC Homo sapiens cDNA clone HTCBHD04 5'
ESTHum:gb|BF924163.1|BF924163
MATCHES:7/8 POS:399-422(+)
MR4-NT0142-271100-201-e11 NT0142 Homo sapiens cDNA

The peptide is found spliced on chromosome 15 indicating Potential new gene and Potential splice site.

DMAAQITQR

HLA-A3302 137-145

ProtHum:ref|XP_011517.2|
MATCHES:9/9 POS:161-169
major histocompatibility complex, class I, A [Homo sapiens]
ProtHum:ref|NP_002107.1|
MATCHES:8/9 POS:161-169
major histocompatibility complex, class I, A [Homo sapiens]
ProtHum:ref|NP_005505.1|
MATCHES:8/9 POS:161-169
major histocompatibility complex, class I, B [Homo sapiens]

Supports expression at the protein level

DQKVHNVSF

Unknown

ProtHum:ref|NP_037459.1|
MATCHES:9/9 POS:265-273
CGI-56 protein [Homo sapiens]

Supports expression at the protein level
Spans splice site

DRPYSHAL

60S ribosomal protein L27 34-41

ProtHum:ref|NP_000979.1|
MATCHES:8/8 POS:35-42
ribosomal protein L27 [Homo sapiens]

Supports expression at the protein level

DSDGSFFLY

Ig gamma chain C region 282-290

ChrHum:ref|NT_026438.1|Hs14_26605
MATCHES:9/9 POS:35044-35070(+)
Homo sapiens chromosome 14 working draft sequence segment
ChrHum:ref|NT_026438.1|Hs14_26605
MATCHES:9/9 POS:53720-53746(+)
Homo sapiens chromosome 14 working draft sequence segment
ChrHum:ref|NT_010168.3|Hs14_10325
MATCHES:9/9 POS:1053612-1053638(+)
Homo sapiens chromosome 14 working draft sequence segment
nr:gi|9837150|gb|AAG00449.1|
MATCHES:9/9 POS:633-641
(AF272773) mutated mouse factor VII molecule immunoconjugate [synthetic construct]
nr:gi|7230486|gb|AAF42993.1|
MATCHES:9/9 POS:563-571
(AF189283) 10B5 scFv [synthetic construct]
nr:gi|9857759|gb|AAG00912.1|
MATCHES:9/9 POS:341-349
(AF237586) recombinant IgG4 heavy chain [Homo sapiens]

Supports expression at the protein level

DTAAQITQR

HLA-B3501 137-145

ProtHum:ref|NP_005505.1|
MATCHES:9/9 POS:161-169
major histocompatibility complex, class I, B [Homo sapiens]
ProtHum:ref|NP_002108.1|
MATCHES:9/9 POS:161-169
major histocompatibility complex, class I, C [Homo sapiens]
ProtHum:ref|NP_061823.1|
MATCHES:8/9 POS:158-166
major histocompatibility complex, class I, F [Homo sapiens]

Supports expression at the protein level

DTIEIITDR

ROA2 139-147

ProtHum:ref|NP_002128.1|
MATCHES:9/9 POS:127-135
heterogeneous nuclear ribonucleoprotein A2/B1 [Homo sapiens]

Supports expression at the protein level

DVFRDPALK

60S ribosomal protein L27 98-106

ProtHum:ref|NP_000979.1|
MATCHES:9/9 POS:99-107
ribosomal protein L27 [Homo sapiens]

Supports expression at the protein level

DVFVVGTER

SPIN 53-61

ProtHum:ref|NP_001509.1|
MATCHES:9/9 POS:53-61
general transcription factor II, i; BTK-associated protein, 135kD; Williams-Beuren syndrome chromosome region 6; General transcription factor II-I (BTK-associated protein, 135kD) [Homo sapiens]

Supports expression at the protein level

DVISSIRNF

EST

ChrHum:ref|NT_023959.3|Hs9_24115
MATCHES:9/9 POS:1446303-1446329(+)
Homo sapiens chromosome 9 working draft sequence segment
ChrHum:ref|NT_007178.3|Hs6_7335
MATCHES:8/9 POS:123572-123598(-)
Homo sapiens chromosome 6 working draft sequence segment
ChrHum:ref|NT_010521.3|Hs16_10678
MATCHES:8/9 POS:286302-286328(+)
Homo sapiens chromosome 16 working draft sequence segment
nt:dbj|AK003822.1|AK003822
MATCHES:8/9 POS:143-169(+)
Mus musculus 18 days embryo cDNA, RIKEN full-length enriched library, clone:1110019J04, full insert sequence
nt:gb|AF369920.1|AF369920
MATCHES:8/9 POS:114-140(+)
Picea abies d-selinene synthase-like protein mRNA, partial cds
nt:emb|AL023883.6|HS404K8
MATCHES:8/9 POS:123572-123598(-)
Human DNA sequence from clone RP3-404K8 on chromosome 6p22.2-22.3 Contains PRL (prolactin) gene, STSs and GSSs, complete sequence [Homo sapiens]
ESTHum:gb|AA313517.1|AA313517
MATCHES:9/9 POS:117-143(+)
EST185464 Colon carcinoma (HCC) cell line Homo sapiens cDNA 5' end
ESTHum:gb|BG942473.1|BG942473
MATCHES:9/9 POS:118-144(+)
ax25f07.x2 Proliferating Human Erythroid Cells (LCB:ax library) Homo sapiens cDNA clone ax25f07 random
ESTHum:gb|BF968847.1|BF968847
MATCHES:9/9 POS:98-124(+)
602270593F1 NIH_MGC_84 Homo sapiens cDNA clone IMAGE:4358878 5'

Potential new gene

DYIHIRIQQR

Translation factor sui I homolog 29-38

ProtHum:ref|NP_005866.1|
MATCHES:10/10 POS:29-38
translation factor sui1 homolog [Homo sapiens]
ProtHum:ref|NP_005792.1|
MATCHES:10/10 POS:29-38
putative translation initiation factor [Homo sapiens]

Supports expression at the protein level

EEFQFIKKA

Associated-microfibril. protein 58-66

ProtHum:ref|NP_005917.1|
MATCHES:9/9 POS:58-66
microfibrillar-associated protein 1 [Homo sapiens]

Supports expression at the protein level

EEFYVDLER

HLA-DQ alpha 33-41

ProtHum:ref|NP_064440.1|
MATCHES:8/9 POS:56-63
major histocompatibility complex, class II, DQ alpha 2 [Homo sapiens]
ChrHum:ref|NT_023407.3|Hs6_23563
MATCHES:9/9 POS:265811-265837(+)
Homo sapiens chromosome 6 working draft sequence segment
ChrHum:ref|NT_007592.3|Hs6_7749
MATCHES:8/9 POS:7359282-7359305(+)
Homo sapiens chromosome 6 working draft sequence segment
nr:gi|2708798|gb|AAB92611.1|
MATCHES:9/9 POS:33-41
(AF038155) MHC class II antigen DQ alpha 1 [Pan troglodytes]
nr:gi|3859522|gb|AAC72830.1|
MATCHES:9/9 POS:16-24
(AF091335) major histocompatibility complex class II antigen [Macaca mulatta]
nr:gi|3859518|gb|AAC72828.1|
MATCHES:9/9 POS:16-24
(AF091333) major histocompatibility complex class II antigen [Macaca mulatta]

Supports expression at the protein level

EHAGVISVL

HBV X interacting protein 40-48

ProtHum:ref|NP_006393.1|
MATCHES:9/9 POS:40-48
hepatitis B virus x-interacting protein (9.6kD) [Homo sapiens]

Supports expression at the protein level

EHAHNMRVM

Elongation factor 2 489-497

ProtHum:ref|NP_001952.1|
MATCHES:9/9 POS:489-497
eukaryotic translation elongation factor 2 [Homo sapiens]

Supports expression at the protein level

EHVASSPAL

13S Golgi transport complex 90 kDa Su

ProtHum:ref|NP_006339.1|
MATCHES:9/9 POS:741-749
golgi transport complex 1 (90 kDa subunit) [Homo sapiens]

Supports expression at the protein level

EIIGKRGIIGY

ATP synthase (bovine) 91-101

ProtHum:ref|NP_006467.1|
MATCHES:11/11 POS:91-101
ATP synthase, H+ transporting, mitochondrial F1F0, subunit g [Homo sapiens]

Supports expression at the protein level

EIKDILIQY

40S ribosomal protein S16 106-114

ProtHum:ref|NP_001011.1|
MATCHES:9/9 POS:107-115
ribosomal protein S16 [Homo sapiens]

Supports expression at the protein level

EIMKWNRER

Unknown

ProtHum:ref|NP_057049.1|
MATCHES:8/9 POS:41-48
CGI-39 protein; cell death-regulatory protein GRIM19 [Homo sapiens]

ELKEKTQL

Unknown

mRNAHum:gi|8922641|ref|NM_018204.1|
MATCHES:7/8 POS:1331-1351(-)
Homo sapiens cytoskeleton associated protein 2 (CKAP2), mRNA

ELKKKTNI

Unknown

mRNAHum:gi|4557254|ref|NM_001114.1|
MATCHES:7/8 POS:5558-5578(-)
Homo sapiens adenylate cyclase 7 (ADCY7), mRNA
ChrHum:ref|NT_009022.3|Hs11_9179
MATCHES:8/8 POS:364396-364419(-)
Homo sapiens chromosome 11 working draft sequence segment
ChrHum:ref|NT_010799.3|Hs17_10956
MATCHES:8/8 POS:1254794-1254817(-)
Homo sapiens chromosome 17 working draft sequence segment
ChrHum:ref|NT_005768.3|Hs3_5925
MATCHES:8/8 POS:853536-853559(+)
Homo sapiens chromosome 3 working draft sequence segment
nr:gi|13272353|gb|AAK17116.1|AF291051_13
MATCHES:7/8 POS:614-621
(AF291051) transketolase [Candidatus Carsonella ruddii]
nr:gi|7430114|pir||G71056
MATCHES:7/8 POS:104-111
probable X-Pro dipeptidase - Pyrococcus horikoshii dbj|BAA30249.1| (AP000005) 351aa long hypothetical X-Pro dipeptidase [Pyrococcus horikoshii]
nt:emb|AL133399.1|AL133399
MATCHES:8/8 POS:79025-79048(-)
Human DNA sequence from clone RP1-305G21 on chromosome 11p13 Contains a pseudogene similar to S100C, STSs and GSSs, complete sequence [Homo sapiens]
nt:gb|AC090945.1|AC090945
MATCHES:8/8 POS:70084-70107(-)
Homo sapiens chromosome 3 clone RP11-255O19 map 3p, complete sequence
nt:emb|AL157917.1|SPAP27G11
MATCHES:8/8 POS:11221-11244(-)
S.pombe chromosome I P1 p27G11

Potential new gene but with very little supporting evidence

ELKVKNLEL

Restin 1273-1281

ProtHum:ref|NP_002947.1|
MATCHES:9/9 POS:1273-1281
restin (Reed-Steinberg cell-expressed intermediate filament-associated protein) [Homo sapiens]

Supports expression at the protein level

ELNPNAEVW

Unknown

ChrHum:ref|NT_024077.3|Hs10_24233
MATCHES:9/9 POS:400807-400833(-)
Homo sapiens chromosome 10 working draft sequence segment

Putative new gene
Supports Ensembl GenScan gene prediction

ELPIVTPAL

Importin alpha 1 subunit 306-314

ProtHum:ref|NP_002257.1|
MATCHES:9/9 POS:306-314
karyopherin alpha 2; RAG cohort 1; importin alpha 1 [Homo sapiens]

Supports expression at the protein level

ELPIVTPALR

Importin alpha 2 subunit 306-315

ProtHum:ref|NP_002257.1|
MATCHES:10/10 POS:306-315
karyopherin alpha 2; RAG cohort 1; importin alpha 1 [Homo sapiens]

Supports expression at the protein level

EPKYKTQL

PRAI-SCS (yeast) 95-102

ChrHum:ref|NT_009891.3|Hs13_10048
MATCHES:7/8 POS:11694-11714(-)
Homo sapiens chromosome 13 working draft sequence segment
ChrHum:ref|NT_023173.3|Hs5_23329
MATCHES:7/8 POS:1084628-1084648(+)
Homo sapiens chromosome 5 working draft sequence segment
ChrHum:ref|NT_009237.3|Hs11_9394
MATCHES:7/8 POS:3301-3321(+)
Homo sapiens chromosome 11 working draft sequence segment
nr:gi|4699586|pdb|1A48|
MATCHES:8/8 POS:95-102
Saicar Synthase
nr:gi|6319326|ref|NP_009409.1|
MATCHES:8/8 POS:95-102
phosphoribosyl amino imidazolesuccinocarbozamide synthetase; Ade1p [Saccharomyces cerevisiae] pir||JQ1395 phosphoribosylaminoimidazolesuccino carboxamide synthase (EC 6.3.2.6) - yeast (Saccharomyces cerevisiae) gb|AAA34398.1| (M67445) phosphoribosyl-amino-imidazolesuccino carboxamide synthetase [Saccharomyces cerevisiae] gb|AAC04963.1| (L22015) Ade1p: phosphoribosyl amino imidazolesuccinocarbozamide synthetase [Saccharomyces cerevisiae]
nr:gi|131634|sp|P27616|PUR7_YEAST
MATCHES:8/8 POS:95-102
PHOSPHORIBOSYLAMIDOIMIDAZOLE- SUCCINOCARBOXAMIDE SYNTHASE (SAICAR SYNTHETASE) gb|AAA34396.1| (M61209) N-succinyl-5-aminoimidazole -4-carboxamide ribotide synthetase [Saccharomyces cerevisiae]

EQYEQILAF

Initiation factor 2 gamma 202-210

ProtHum:ref|NP_001406.1|
MATCHES:9/9 POS:202-210
eukaryotic translation initiation factor 2, subunit 3 (gamma, 52kD); eukaryotic translation initiation factor 2G [Homo sapiens]

Supports expression at the protein level

ESGPSIVHR

beta actin 363-371

ProtHum:ref|NP_001605.1|
MATCHES:9/9 POS:364-372
actin, gamma 1 propeptide; cytoskeletal gamma-actin; actin, cytoplasmic 2 [Homo sapiens]
ProtHum:ref|NP_001092.1|
MATCHES:9/9 POS:364-372
beta actin; beta cytoskeletal actin [Homo sapiens]
ProtHum:ref|NP_001606.1|
MATCHES:8/9 POS:365-373
actin, gamma 2 propeptide; actin, alpha-3 [Homo sapiens]

Supports expression at the protein level

ESGPSIVHRK

beta actin 363-372

ProtHum:ref|NP_001605.1|
MATCHES:10/10 POS:364-373
actin, gamma 1 propeptide; cytoskeletal gamma-actin; actin, cytoplasmic 2 [Homo sapiens]
ProtHum:ref|NP_001092.1|
MATCHES:10/10 POS:364-373
beta actin; beta cytoskeletal actin [Homo sapiens]
ProtHum:ref|NP_001606.1|
MATCHES:9/10 POS:365-374
actin, gamma 2 propeptide; actin, alpha-3 [Homo sapiens]

Supports expression at the protein level

ETFGFEIQSY

Leucine zipper containing protein 51-60

ProtHum:ref|NP_004279.2|
MATCHES:10/10 POS:86-95
cytohesin binding protein; cytohesin binding protein HE; pleckstrin homology, Sec7, and coiled-coil domains protein-binding protein [Homo sapiens]

Supports expression at the protein level
Spans splice site

ETFNTPAMY

beta actin 124-132

ProtHum:ref|NP_001092.1|
MATCHES:9/9 POS:125-133
beta actin; beta cytoskeletal actin [Homo sapiens]
ProtHum:ref|NP_001605.1|
MATCHES:9/9 POS:125-133
actin, gamma 1 propeptide; cytoskeletal gamma-actin; actin, cytoplasmic 2 [Homo sapiens]
ProtHum:ref|NP_005150.1|
MATCHES:8/9 POS:127-135
actin, alpha, cardiac muscle precursor [Homo sapiens]

Supports expression at the protein level

ETFNTPAMYV

gamma actin 124-133

ProtHum:ref|NP_001092.1|
MATCHES:10/10 POS:125-134
beta actin; beta cytoskeletal actin [Homo sapiens]
ProtHum:ref|NP_001605.1|
MATCHES:10/10 POS:125-134
actin, gamma 1 propeptide; cytoskeletal gamma-actin; actin, cytoplasmic 2 [Homo sapiens]
ProtHum:ref|NP_005150.1|
MATCHES:9/10 POS:127-136
actin, alpha, cardiac muscle precursor [Homo sapiens]

Supports expression at the protein level

ETFSGVYKK

40S ribosomal protein S7 171-179

ProtHum:ref|NP_001002.1|
MATCHES:9/9 POS:171-179
ribosomal protein S7 [Homo sapiens]

Supports expression at the protein level

ETSPLTAEKL

CGD2 (human) 114-123

ProtHum:ref|NP_001750.1|
MATCHES:10/10 POS:114-123
cyclin D2 [Homo sapiens]
ProtHum:ref|NP_001749.1|
MATCHES:9/10 POS:115-124
cyclin D1 (PRAD1: parathyroid adenomatosis 1); Cyclin D1 [Homo sapiens]

Supports expression at the protein level

ETVAVGVIKAV

Elongation factor 1 alpha (modified E

ProtHum:ref|NP_001393.1|
MATCHES:10/11 POS:431-441
eukaryotic translation elongation factor 1 alpha 1 [Homo sapiens]
ProtHum:ref|NP_001394.1|
MATCHES:10/11 POS:367-377
eukaryotic translation elongation factor 1 alpha 1-like 14 [Homo sapiens]

EVAPPEYHR

EST

ProtHum:ref|NP_006782.1|
MATCHES:9/9 POS:312-320
MORF-related gene 15 [Homo sapiens]
ProtHum:ref|NP_006783.2|
MATCHES:8/9 POS:224-232
mortality factor 4 [Homo sapiens]

Supports expression at the protein level

EVAPPEYHRK

EST

ProtHum:ref|NP_006782.1|
MATCHES:10/10 POS:312-321
MORF-related gene 15 [Homo sapiens]
ProtHum:ref|NP_006783.2|
MATCHES:9/10 POS:224-233
mortality factor 4 [Homo sapiens]

Supports expression at the protein level

EVAQLIQGGR

EST (human)

ProtHum:ref|NP_057182.1|
MATCHES:10/10 POS:88-97
HSPC040 protein [Homo sapiens]

Supports expression at the protein level

EVILIDPFHK

60S ribosomal protein L15 130-139

ProtHum:ref|NP_002939.1|
MATCHES:10/10 POS:131-140
ribosomal protein L15 [Homo sapiens]

Supports expression at the protein level

EVIPYTPAM

Heme oxygenase 1 103-111

ProtHum:ref|NP_002124.1|
MATCHES:9/9 POS:103-111
heme oxygenase (decyclizing) 1 [Homo sapiens]

Supports expression at the protein level

EVNDPSLTIK

Cytochrome C oxidase II 89-98

ChrHum:ref|NT_023716.3|Hs8_23872
MATCHES:9/10 POS:16324-16353(+)
Homo sapiens chromosome 8 working draft sequence segment
ChrHum:ref|NT_007583.3|Hs6_7740
MATCHES:9/10 POS:594494-594523(-)
Homo sapiens chromosome 6 working draft sequence segment
nr:gi|2245560|gb|AAB63450.1|
MATCHES:10/10 POS:51-60
(AF004339) cytochrome c oxidase subunit II [Homo sapiens]
nr:gi|14016|emb|CAA39187.1|
MATCHES:10/10 POS:48-57
(X55654) cytochrome C oxidase II subunit [Homo sapiens]
nr:gi|13273246|gb|AAK17847.1|
MATCHES:10/10 POS:89-98
(AF347012) cytochrome c oxidase subunit II [Homo sapiens] gb|AAK17860.1| (AF347013) cytochrome c oxidase subunit II [Homo sapiens]

Potential SNP

EVVVSGKLR

40S ribosomal protein S3 135-143

ProtHum:ref|NP_000996.1|
MATCHES:9/9 POS:135-143
ribosomal protein S3 [Homo sapiens]

Supports expression at the protein level

EVYQVTVY

p53 associated protein 274-281

ProtHum:ref|NP_006869.1|
MATCHES:8/8 POS:79-86
mouse double minute 2, human homolog of, protein isoform MDM2a; p53-binding protein MDM2; oncoprotein MDM2 [Homo sapiens]
ProtHum:ref|NP_006871.1|
MATCHES:8/8 POS:104-111
mouse double minute 2, human homolog of, protein isoform MDM2c; p53-binding protein MDM2; oncoprotein MDM2 [Homo sapiens]
ProtHum:ref|NP_002383.1|
MATCHES:8/8 POS:274-281
mouse double minute 2, human homolog of, full length protein isoform; p53-binding protein MDM2; oncoprotein MDM2 [Homo sapiens]

Supports expression at the protein level
Spans splice site

FAFPIIQRV

Unknown

ChrHum:ref|NT_010393.3|Hs16_10550
MATCHES:8/9 POS:711100-711126(-)
Homo sapiens chromosome 16 working draft sequence segment

FAFVTDNTY

Cyclin B 269-277

ChrHum:ref|NT_023209.3|Hs5_23365
MATCHES:9/9 POS:894295-894321(+)
Homo sapiens chromosome 5 working draft sequence segment
ChrHum:ref|NT_023209.3|Hs5_23365
MATCHES:9/9 POS:922053-922079(+)
Homo sapiens chromosome 5 working draft sequence segment
nr:gi|13518072|gb|AAK27425.1|
MATCHES:9/9 POS:18-26
(AY027770) cyclin B1 [Homo sapiens]
nr:gi|13518059|gb|AAK27419.1|
MATCHES:9/9 POS:18-26
(AY027763) cyclin B1 [Homo sapiens] gb|AAK27421.1| (AY027765) cyclin B1 [Homo sapiens] gb|AAK27422.1| (AY027767) cyclin B1 [Homo sapiens] gb|AAK27423.1| (AY027768) cyclin B1 [Homo sapiens] gb|AAK27424.1| (AY027769) cyclin B1 [Homo sapiens]
nr:gi|13518057|gb|AAK27418.1|
MATCHES:9/9 POS:18-26
(AY027762) cyclin B1 [Homo sapiens]

Supports expression at the protein level

FAKPRVGG

Unknown

ChrHum:ref|NT_015360.3|Hs16_15516
MATCHES:7/8 POS:995609-995632(-)
Homo sapiens chromosome 16 working draft sequence segment
ChrHum:ref|NT_015360.3|Hs16_15516
MATCHES:7/8 POS:921434-921457(+)
Homo sapiens chromosome 16 working draft sequence segment
ChrHum:ref|NT_009711.3|Hs12_9868
MATCHES:7/8 POS:1659019-1659042(+)
Homo sapiens chromosome 12 working draft sequence segment
nr:gi|13471997|ref|NP_103564.1|
MATCHES:7/8 POS:99-106
probable riboflavin-specific deaminase [Mesorhizobium loti] dbj|BAB49350.1| (AP002999) probable riboflavin-specific deaminase [Mesorhizobium loti]

FAPYNKPSL

KIAA1528 362-370

ProtHum:ref|XP_018446.1|
MATCHES:9/9 POS:27-35
postmeiotic segregation increased 2-like 11 [Homo sapiens]

Supports expression at the protein level

FAYDGKDYI

MHC I alpha 116-124

ProtHum:ref|NP_005505.1|
MATCHES:9/9 POS:140-148
major histocompatibility complex, class I, B [Homo sapiens]
ProtHum:ref|NP_005507.1|
MATCHES:8/9 POS:137-145
major histocompatibility complex, class I, E [Homo sapiens]
ProtHum:ref|NP_061823.1|
MATCHES:8/9 POS:138-145
major histocompatibility complex, class I, F [Homo sapiens]

Supports expression at the protein level

FAYDGKDYIAL

HLA-Cw0401 140-150

ProtHum:ref|NP_005505.1|
MATCHES:11/11 POS:140-150
major histocompatibility complex, class I, B [Homo sapiens]
ProtHum:ref|NP_002108.1|
MATCHES:10/11 POS:141-150
major histocompatibility complex, class I, C [Homo sapiens]
ProtHum:ref|NP_002107.1|
MATCHES:10/11 POS:141-150
major histocompatibility complex, class I, A [Homo sapiens]

Supports expression at the protein level

FAYDGKDYL

HLA-E 116-124

ProtHum:ref|NP_005507.1|
MATCHES:9/9 POS:137-145
major histocompatibility complex, class I, E [Homo sapiens]
ProtHum:ref|NP_005505.1|
MATCHES:8/9 POS:140-148
major histocompatibility complex, class I, B [Homo sapiens]
ProtHum:ref|NP_002118.1|
MATCHES:8/9 POS:140-148
HLA-G histocompatibility antigen, class I, G; HLA-G histocompatibility antigen, class I; major histocompatibility complex, class I, G [Homo sapiens]

Supports expression at the protein level

FAYDGKDYLTL

HLA-E 116-126

ProtHum:ref|NP_005507.1|
MATCHES:11/11 POS:137-147
major histocompatibility complex, class I, E [Homo sapiens]

Supports expression at the protein level

FCVGFTKKR

40S ribosomal protein S3A 138-146

ProtHum:ref|NP_000997.1|
MATCHES:9/9 POS:138-146
ribosomal protein S3A [Homo sapiens]

Supports expression at the protein level

FEPTVVKKY

Unknown

N/A

FHAPATLEA

Unknown

ProtHum:ref|NP_036243.1|
MATCHES:8/9 POS:237-244
chromosome 14 open reading frame 3 [Homo sapiens]

FHMDPSGTF

Proteasome Su Z 154-162

ProtHum:ref|NP_002781.1|
MATCHES:9/9 POS:154-162
proteasome (prosome, macropain) subunit, alpha type, 5; Proteasome component 5 [Homo sapiens]

Supports expression at the protein level

FIKDGSSTY

Unknown

ProtHum:ref|XP_001646.2|
MATCHES:9/9 POS:390-398
basement membrane-induced gene [Homo sapiens]

Supports expression at the protein level

FLGENISNFL

Apolipoprotein L 242-251

ProtHum:ref|NP_003652.1|
MATCHES:10/10 POS:242-251
apolipoprotein L [Homo sapiens]

Supports expression at the protein level

FLKPKFVAL

Unknown

ChrHum:ref|NT_005526.3|Hs3_5683
MATCHES:8/9 POS:88535-88561(-)
Homo sapiens chromosome 3 working draft sequence segment
ChrHum:ref|NT_023177.3|Hs5_23333
MATCHES:8/9 POS:94999-95025(-)
Homo sapiens chromosome 5 working draft sequence segment
nr:gi|11182423|sp|P45779|GSPD_VIBCH
MATCHES:8/9 POS:223-230
GENERAL SECRETION PATHWAY PROTEIN D PRECURSOR (CHOLERA TOXIN SECRETION PROTEIN EPSD)
nr:gi|609625|gb|AAA58785.1|
MATCHES:8/9 POS:223-230
(L33796) EpsD [Vibrio cholerae]

FLLWATAEA

Platelet glycoprotein IX 8-16

ProtHum:ref|NP_000165.1|
MATCHES:9/9 POS:8-16
glycoprotein IX (platelet) [Homo sapiens]

Supports expression at the protein level

FPRLKSKL

Apolipoprotein L 129-136

ProtHum:ref|NP_003652.1|
MATCHES:7/8 POS:129-136
apolipoprotein L [Homo sapiens]
ChrHum:ref|NT_025796.2|Hs8_25952
MATCHES:8/8 POS:294794-294817(-)
Homo sapiens chromosome 8 working draft sequence segment
ChrHum:ref|NT_008055.3|Hs8_8212
MATCHES:7/8 POS:1519467-1519490(-)
Homo sapiens chromosome 8 working draft sequence segment
ChrHum:ref|NT_008055.3|Hs8_8212
MATCHES:7/8 POS:610788-610808(+)
Homo sapiens chromosome 8 working draft sequence segment
nr:gi|12408013|gb|AAG53690.1|AF323540_1
MATCHES:8/8 POS:160-167
(AF323540) apolipoprotein L-I [Homo sapiens] gb|AAK11591.1| (AF323548) apolipoprotein L-I splice variant B [Homo sapiens]
nr:gi|12232634|gb|AAB81218.2|
MATCHES:8/8 POS:129-136
(AF019225) apolipoprotein L-I [Homo sapiens]
nr:gi|3121759|sp|O14791|APL_HUMAN
MATCHES:8/8 POS:129-136
APOLIPOPROTEIN L PRECURSOR (APO-L)

Supports expression at the protein level

FPSEIVGKRI

40S ribosomal protein S7/S8 135-144

ProtHum:ref|NP_001002.1|
MATCHES:10/10 POS:135-144
ribosomal protein S7 [Homo sapiens]

Supports expression at the protein level

FPYGTTVTY

DR2/CD21 545-553

ProtHum:ref|NP_001868.1|
MATCHES:9/9 POS:546-554
complement component (3d/Epstein Barr virus) receptor 2 [Homo sapiens]

Supports expression at the protein level

FQLEINVRL

Unknown

ChrHum:ref|NT_005079.3|Hs2_5236
MATCHES:8/9 POS:725780-725806(-)
Homo sapiens chromosome 2 working draft sequence segment
nt:gb|AC017079.5|AC017079
MATCHES:8/9 POS:9926-9952(+)
Homo sapiens clone RP11-462M9, complete sequence

FRYNGLIHR

60S ribosomal protein L28 37-45

ProtHum:ref|NP_000982.1|
MATCHES:9/9 POS:38-46
ribosomal protein L28 [Homo sapiens]

Supports expression at the protein level

FSGPAISRI

Ribosephosphate phosphokinase 252-260

ProtHum:ref|NP_002756.1|
MATCHES:9/9 POS:253-261
phosphoribosyl pyrophosphate synthetase 2 [Homo sapiens]
ProtHum:ref|NP_002755.1|
MATCHES:9/9 POS:253-261
phosphoribosyl pyrophosphate synthetase 1 [Homo sapiens]

Supports expression at the protein level

FSLPAQLL

26S proteasome alpha subunit 478-485

ProtHum:ref|NP_008926.2|
MATCHES:7/8 POS:9-16
butyrophilin, subfamily 2, member A2; butyrophilin 2 [Homo sapiens]
ProtHum:ref|NP_006256.1|
MATCHES:7/8 POS:373-380
RAD21 (S. pombe) homolog; hHR21 [Homo sapiens]
ChrHum:ref|NT_010164.3|Hs14_10321
MATCHES:8/8 POS:2542470-2542493(+)
Homo sapiens chromosome 14 working draft sequence segment
ChrHum:ref|NT_024891.3|Hs17_25047
MATCHES:8/8 POS:532281-532304(+)
Homo sapiens chromosome 17 working draft sequence segment
ChrHum:ref|NT_008476.3|Hs9_8633
MATCHES:8/8 POS:1676638-1676661(+)
Homo sapiens chromosome 9 working draft sequence segment
nr:gi|7492679|pir||T40584
MATCHES:8/8 POS:61-68
probable involvement in ergosterol biosynthesis - fission yeast (Schizosaccharomyces pombe) emb|CAA22812.1| (AL035216) possible involvement in ergosterol biosynthesis [Schizosaccharomyces pombe]
nr:gi|4336726|gb|AAD17919.1|
MATCHES:7/8 POS:717-723
(AF103900) fasciclin II transmembrane isoform [Manduca sexta]
nr:gi|4336724|gb|AAD17918.1|
MATCHES:7/8 POS:717-723
(AF103899) fasciclin II GPI-linked isoform [Manduca sexta]

Ambiguous

FTEVSIRKY

Unknown

ChrHum:ref|NT_009622.3|Hs12_9779
MATCHES:8/9 POS:922704-922730(+)
Homo sapiens chromosome 12 working draft sequence segment
ChrHum:ref|NT_005239.3|Hs2_5396
MATCHES:8/9 POS:943274-943300(-)
Homo sapiens chromosome 2 working draft sequence segment
nt:gb|AC022364.28|AC022364
MATCHES:8/9 POS:55888-55914(-)
Homo sapiens 12 BAC RP11-967K21 (Roswell Park Cancer Institute Human BAC Library) complete sequence

FVLPELPSV

Hypothetical protein KIAA0174 321-329

ProtHum:ref|NP_055576.1|
MATCHES:9/9 POS:321-329
KIAA0174 gene product [Homo sapiens]

Supports expression at the protein level

FYDIDLDPETE

C1 tetrahydrofolate synthase 918-934

ProtHum:ref|NP_005947.1|
MATCHES:11/11 POS:919-929
methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase; 5,10-methylenetetrahydrofolate dehydrogenase, 5,10-methylenetetrahydrofolate cyclohydrolase, 10-formyltetrahydrofolate synthetase; 5,10-methylenetetrahydrofolate dehydrogenase, [Homo sapiens]

Supports expression at the protein level

FYDIDLDPETEQ

C1 tetrahydrofolate synthase 918-934

ProtHum:ref|NP_005947.1|
MATCHES:12/12 POS:919-930
methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase; 5,10-methylenetetrahydrofolate dehydrogenase, 5,10-methylenetetrahydrofolate cyclohydrolase, 10-formyltetrahydrofolate synthetase; 5,10-methylenetetrahydrofolate dehydrogenase, [Homo sapiens]

Supports expression at the protein level

GAVDPLLAL

Importin alpha 1 subunit 204-212

ProtHum:ref|NP_002257.1|
MATCHES:9/9 POS:204-212
karyopherin alpha 2; RAG cohort 1; importin alpha 1 [Homo sapiens]

Supports expression at the protein level

GAVNVVMTF

Glucose transporter 5 322-330

ProtHum:ref|NP_003030.1|
MATCHES:9/9 POS:322-330
solute carrier family 2 (facilitated glucose transporter), member 5 [Homo sapiens]

Supports expression at the protein level

GEFGGFGSV

Histone acetyltransferase 127-135

ProtHum:ref|NP_005601.1|
MATCHES:9/9 POS:103-111
retinoblastoma-binding protein 4; retinoblastoma-binding protein p48; chromatin assembly factor/CAF-1 p48 subunit; MSI1 protein homolog [Homo sapiens]
ProtHum:ref|NP_002884.1|
MATCHES:9/9 POS:102-110
retinoblastoma-binding protein 7; retinoblastoma-binding protein RbAp46; histone acetyltransferase type B subunit 2; retinoblastoma-binding protein p46; G1/S transition control protein-binding protein RbAp46 [Homo sapiens]

Supports expression at the protein level

GEFIPGNDLHR

Unknown

N/A

GEFPGKIFLYA

Unknown

N/A

GEFPPYDNW

Unknown

nt:gb|AC006761.1|CELY41G9A
MATCHES:8/9 POS:12606-12632(-)
Caenorhabditis elegans cosmid Y41G9A, complete sequence

GEFSITYK

40S ribosomal protein S15 116-123

ProtHum:ref|NP_001009.1|
MATCHES:8/8 POS:117-124
ribosomal protein S15 [Homo sapiens]

Supports expression at the protein level

GEFVDLYV

40S ribosomal protein S21 6-13

ProtHum:ref|NP_001015.1|
MATCHES:8/8 POS:6-13
ribosomal protein S21 [Homo sapiens]

Supports expression at the protein level

GEHGLIIRV

NRD convertase 766-774

ProtHum:ref|NP_002516.1|
MATCHES:9/9 POS:823-831
nardilysin (N-arginine dibasic convertase); hNRD1; hNRD2; nardilysin (N-arginine dibasic convertase) 1 [Homo sapiens]

Supports expression at the protein level

GEILDVFDA

IRE-BP 695-703

ProtHum:ref|NP_002188.1|
MATCHES:9/9 POS:747-755
aconitase 1; Aconitase, soluble; iron-responsive element binding protein 1 [Homo sapiens]

Supports expression at the protein level
Spans splice site

GEVDVEQHT

Cyclin B 313-321

ProtHum:ref|NP_004692.1|
MATCHES:9/9 POS:277-285
cyclin B2 [Homo sapiens]

Supports expression at the protein level
Spans splice site

GFYPGSIEV

MHCII beta chain 121-129

ProtHum:ref|NP_072049.1|
MATCHES:9/9 POS:150-158
major histocompatibility complex, class II, DR beta 3 [Homo sapiens]
ProtHum:ref|NP_002116.1|
MATCHES:9/9 POS:150-158
major histocompatibility complex, class II, DR beta 5 [Homo sapiens]
ProtHum:ref|NP_002115.1|
MATCHES:9/9 POS:150-158
major histocompatibility complex, class II, DR beta 1 [Homo sapiens]

Supports expression at the protein level

GHDPRAQGTL

HLA-DP alpha chain 220-229

ChrHum:ref|NT_007592.3|Hs6_7749
MATCHES:10/10 POS:9375222-9375251(-)
Homo sapiens chromosome 6 working draft sequence segment
ChrHum:ref|NT_007592.3|Hs6_7749
MATCHES:10/10 POS:7682415-7682444(-)
Homo sapiens chromosome 6 working draft sequence segment
nr:gi|224342|prf||1102205A
MATCHES:10/10 POS:182-191
antigen HLA DAalpha [Homo sapiens]
nr:gi|758100|emb|CAA25143.1|
MATCHES:10/10 POS:224-233
(X00457) SB classII histocompatibility antigen alpha- chain [Homo sapiens]
nr:gi|122204|sp|P20036|HA2Q_HUMAN
MATCHES:10/10 POS:251-260
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DP ALPHA CHAIN PRECURSOR (HLA-SB ALPHA CHAIN) (MHC CLASS II DP3-ALPHA) (DP(W3)) (DP(W4)) pir||HLHUSB MHC class II histocompatibility antigen HLA-DP alpha-1 chain precursor - human emb|CAA26887.1| (X03100) class II antigen [Homo sapiens] gb|AAA63220.1| (M27487) MHC class II DP3-alpha [Homo sapiens]

Supports expression at the protein level

GHLENNPAL

60S acidic ribosomal protein PQ 67-75

ProtHum:ref|NP_000993.1|
MATCHES:9/9 POS:67-75
ribosomal protein, large, P0; P0 [Homo sapiens]

Supports expression at the protein level

GILGFVFTL

Influenza A MP 58-66

ChrHum:ref|NT_008627.3|Hs10_8784
MATCHES:8/9 POS:271499-271522(+)
Homo sapiens chromosome 10 working draft sequence segment
ChrHum:ref|NT_008055.3|Hs8_8212
MATCHES:8/9 POS:952698-952721(-)
Homo sapiens chromosome 8 working draft sequence segment
ChrHum:ref|NT_015118.2|Hs2_15274
MATCHES:8/9 POS:674753-674776(+)
Homo sapiens chromosome 2 working draft sequence segment
nr:gi|9988688|gb|AAG10745.1|
MATCHES:9/9 POS:58-66
(AF268133) M1 protein [Influenza A virus (A/Swine/Colorado/23619/99(H3N2))] gb|AAG10746.1| (AF268134) M1 protein [Influenza A virus (A/Swine/NorthCarolina/16497/99(H3N2))]
nr:gi|9988680|gb|AAG10741.1|
MATCHES:9/9 POS:58-66
(AF268129) M1 protein [Influenza A virus (A/Swine/Illinois/21587/99(H3N2))] gb|AAG10742.1| (AF268130) M1 protein [Influenza A virus (A/Swine/Oklahoma/18717/99(H3N2))] gb|AAG10743.1| (AF268131) M1 protein [Influenza A virus (A/Swine/Oklahoma/18089/99(H3N2))] gb|AAG10744.1| (AF268132) M1 protein [Influenza A virus (A/Swine/Wisconsin/14094/99(H3N2))]
nr:gi|6048806|gb|AAF02333.1|AF098565_1
MATCHES:9/9 POS:52-60
(AF098565) M1 matrix protein [Influenza A virus (A/Duck/Hong Kong/698/79 (H5N3))]

Human pathogen

GLDVLTAKV

Vinculin 358-366

ProtHum:ref|NP_054706.1|
MATCHES:9/9 POS:359-367
VCL isoform meta-VCL [Homo sapiens]
ProtHum:ref|NP_003364.1|
MATCHES:9/9 POS:359-367
vinculin isoform VCL [Homo sapiens]

Supports expression at the protein level

GLKVKGNEF

Unknown

ChrHum:ref|NT_017854.3|Hs11_18010
MATCHES:8/9 POS:82030-82056(+)
Homo sapiens chromosome 11 working draft sequence segment
ChrHum:ref|NT_006138.3|Hs4_6295
MATCHES:8/9 POS:403727-403753(+)
Homo sapiens chromosome 4 working draft sequence segment
ChrHum:ref|NT_024560.3|Hs13_24716
MATCHES:8/9 POS:1104255-1104281(-)
Homo sapiens chromosome 13 working draft sequence segment
nt:gb|AC010956.12|AC010956
MATCHES:8/9 POS:8773-8799(+)
Homo sapiens, clone RP11-5N23, complete sequence
nt:emb|AL137145.13|AL137145
MATCHES:8/9 POS:167366-167392(+)
Human DNA sequence from clone RP11-563J2 on chromosome 10 Contains ESTs, STSs, GSSs and a CpG island. Contains a novel pseudogene and the 3' part of the PRKCQ gene for protein kinase C theta, complete sequence [Homo sapiens]

GLSEFTEYL

Microtubuli-associated protein 1B

ProtHum:ref|NP_005900.1|
MATCHES:9/9 POS:225-233
microtubule-associated protein 1B [Homo sapiens]

Supports expression at the protein level

GLVPFLVSV

Importin alpha 1 subunit 377-385

ProtHum:ref|NP_002257.1|
MATCHES:9/9 POS:377-385
karyopherin alpha 2; RAG cohort 1; importin alpha 1 [Homo sapiens]

Potential SNP

GPPGVTIVK

Unknown

N/A

GQAPGYSY

Cytochrome C 42-49

ProtHum:ref|NP_061820.1|
MATCHES:8/8 POS:42-49
cytochrome c [Homo sapiens]

Supports expression at the protein level

GQFKTYAI

40S ribosomal protein S21 48-55

ProtHum:ref|NP_001015.1|
MATCHES:8/8 POS:48-55
ribosomal protein S21 [Homo sapiens]

Supports expression at the protein level

GQIVGGVYL

HCV-1 cAg 27-35

ChrHum:ref|NT_005151.3|Hs2_5308
MATCHES:8/9 POS:375400-375426(+)
Homo sapiens chromosome 2 working draft sequence segment
nr:gi|455024|gb|AAA16300.1|
MATCHES:9/9 POS:28-36
(M86779) core envelope protein [Hepatitis C virus]
nr:gi|540837|pir||S41363
MATCHES:9/9 POS:28-36
genome polyprotein - hepatitis C virus (genotype 4, N2) (fragment) emb|CAA82604.1| (Z29466) core region [Hepatitis C virus] prf||2116349AB core protein [Hepatitis C virus]
nr:gi|296160|emb|CAA50531.1|
MATCHES:9/9 POS:28-36
(X71407) core protein [Hepatitis C virus]

Human pathogen

GQRKGAGSVF

60S ribosomal protein L8 7-16

ProtHum:ref|NP_000964.1|
MATCHES:10/10 POS:7-16
ribosomal protein L8 [Homo sapiens]

Supports expression at the protein level

GQRKPATSY

60S ribosomal protein L28 68-76

ProtHum:ref|NP_000982.1|
MATCHES:9/9 POS:69-77
ribosomal protein L28 [Homo sapiens]

Supports expression at the protein level

GQVEVTGDEY

60S ribosomal protein L5 121-130

ProtHum:ref|NP_000960.1|
MATCHES:10/10 POS:121-130
ribosomal protein L5 [Homo sapiens]

Supports expression at the protein level

GQYGNPLNK

Metalloproteinase (bovine) 19-27

ProtHum:ref|NP_001101.1|
MATCHES:9/9 POS:19-27
a disintegrin and metalloprotease domain 10 [Homo sapiens]

Supports expression at the protein level

GRFDVKIEV

Sodium potassium ATPase 293-301

ProtHum:ref|NP_001668.1|
MATCHES:9/9 POS:293-301
ATPase, Na+/K+ transporting, beta 1 polypeptide; ATPase, Na+K+ transporting, beta-1 polypeptide [Homo sapiens]

Supports expression at the protein level

GRFEGTSTK

Neuronal acetylcholine receptor 141-149

ProtHum:ref|NP_000736.1|
MATCHES:9/9 POS:141-149
cholinergic receptor, nicotinic, alpha polypeptide 5; Cholinergic receptor, neuronal nicotinic, alpha polypeptide-5 [Homo sapiens]

Supports expression at the protein level

GRFGSGMNM

hnRNA-binding protein M4 359-367

ProtHum:ref|NP_005959.1|
MATCHES:9/9 POS:201-209
heterogeneous nuclear ribonucleoprotein M; heterogenous nuclear ribonucleoprotein M4; N-acetylglucosamine receptor 1 (thyroid); N-acetylglucosamine receptor 1; heterogeneous nuclear ribonucleoprotein M4 [Homo sapiens]

Supports expression at the protein level

GRFGVGNRY

Unknown

ChrHum:ref|NT_005962.3|Hs3_6119
MATCHES:8/9 POS:1462433-1462456(+)
Homo sapiens chromosome 3 working draft sequence segment
ChrHum:ref|NT_016968.3|Hs6_17124
MATCHES:8/9 POS:307379-307405(-)
Homo sapiens chromosome 6 working draft sequence segment
nt:gb|U57488.1|DMU57488
MATCHES:8/9 POS:162-188(-)
Drosophila melanogaster esterase-6 (est-6) gene, partial cds
nt:gb|U57487.1|DMU57487
MATCHES:8/9 POS:162-188(-)
Drosophila melanogaster esterase-6 (est-6) gene, partial cds
nt:gb|U57486.1|DMU57486
MATCHES:8/9 POS:162-188(-)
Drosophila melanogaster esterase-6 (est-6) gene, partial cds

GRFKLIVLY

Unknown

nt:gb|AE003695.1|AE003695
MATCHES:8/9 POS:143320-143346(+)
Drosophila melanogaster genomic scaffold 142000013386035 section 20 of 105, complete sequence
nt:gb|AC009741.5|AC009741
MATCHES:8/9 POS:112026-112052(+)
Drosophila melanogaster, chromosome 3R, region 87B-87B, BAC clone BACR44K17, complete sequence

GRFNGQFKTY

40S ribosomal protein S21 44-53

ProtHum:ref|NP_001015.1|
MATCHES:10/10 POS:44-53
ribosomal protein S21 [Homo sapiens]

Supports expression at the protein level

GRIDKPILK

60S ribosomal protein L8 173-181

ProtHum:ref|NP_000964.1|
MATCHES:9/9 POS:173-181
ribosomal protein L8 [Homo sapiens]

Supports expression at the protein level

GRILSGVVTK

40S ribosomal protein S11 70-79

ProtHum:ref|NP_001006.1|
MATCHES:10/10 POS:70-79
ribosomal protein S11 [Homo sapiens]

Supports expression at the protein level

GRKTGQAPGY

Cytochrome C 38-47

ProtHum:ref|NP_061820.1|
MATCHES:10/10 POS:38-47
cytochrome c [Homo sapiens]

Supports expression at the protein level

GRLTKHTKF

60S ribosomal protein L36 (rat) 29-38

ProtHum:ref|NP_056229.1|
MATCHES:9/9 POS:31-39
ribosomal protein L36 [Homo sapiens]

Supports expression at the protein level

GRTFIQPNM

Amidophosphoribosyl transferase

ProtHum:ref|NP_002694.1|
MATCHES:9/9 POS:354-362
phosphoribosyl pyrophosphate amidotransferase [Homo sapiens]

Supports expression at the protein level

GRVFIIKE

Unknown

ProtHum:ref|NP_057342.1|
MATCHES:7/8 POS:410-416
high-glucose-regulated protein 8 [Homo sapiens]
ProtHum:ref|NP_055363.1|
MATCHES:7/8 POS:95-102
tropomodulin 2 (neuronal) [Homo sapiens]

GRWPGSSLYY

Lamin B receptor 14-23

ProtHum:ref|NP_002287.1|
MATCHES:10/10 POS:14-23
lamin B receptor [Homo sapiens]

Supports expression at the protein level

GSGPVVSLGW

Unknown

ProtHum:ref|NP_072097.1|
MATCHES:9/10 POS:83-91
vacuolar protein sorting 16 (yeast homolog); vacuolar protein sorting protein 16 [Homo sapiens]

GSWDGTLRL

Guanine nucleotide binding protein 81-89

ProtHum:ref|NP_006089.1|
MATCHES:9/9 POS:81-89
guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1; protein homologous to chicken B complex protein, guanine nucleotide binding [Homo sapiens]
ProtHum:ref|NP_009109.1|
MATCHES:8/9 POS:283-291
unr-interacting protein [Homo sapiens]

Supports expression at the protein level

GTDPGVLIY

Unknown

ChrHum:ref|NT_010074.3|Hs14_10231
MATCHES:8/9 POS:2152472-2152495(+)
Homo sapiens chromosome 14 working draft sequence segment
ChrHum:ref|NT_021886.3|Hs1_22042
MATCHES:8/9 POS:460674-460700(+)
Homo sapiens chromosome 1 working draft sequence segment
ChrHum:ref|NT_011033.3|Hs18_11190
MATCHES:8/9 POS:1524085-1524108(+)
Homo sapiens chromosome 18 working draft sequence segment
nt:emb|AL358275.4|CNS05TDY
MATCHES:8/9 POS:24805-24828(-)
Human chromosome 14 DNA sequence Partial sequence from BAC R-666E17 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence
nt:emb|AL078645.31|HSG115G20
MATCHES:8/9 POS:31035-31061(+)
Human DNA sequence from clone GS1-115G20 on chromosome 1. Contains (part of) a putative novel gene, the 5' end of a novel gene, a pseudogene similar to mouse Htf9c, ESTs, STSs and GSSs, complete sequence [Homo sapiens]

GVLVGVALI

CEA 694-702

ProtHum:ref|NP_004354.1|
MATCHES:9/9 POS:694-702
carcinoembryonic antigen-related cell adhesion molecule 5; carcinoembryonic antigen [Homo sapiens]
ProtHum:ref|NP_001808.1|
MATCHES:8/9 POS:159-167
carcinoembryonic antigen-related cell adhesion molecule 4; carcinoembryonic antigen gene family member 7 [Homo sapiens]
ProtHum:ref|NP_001806.1|
MATCHES:8/9 POS:159-167
carcinoembryonic antigen-related cell adhesion molecule 3; carcinoembryonic antigen gene family member 1 [Homo sapiens]

Supports expression at the protein level

GVMPSHFSR

40S ribosomal protein S19 85-93

ProtHum:ref|NP_001013.1|
MATCHES:9/9 POS:86-94
ribosomal protein S19 [Homo sapiens]

Supports expression at the protein level

GVPKTHLEL

AIF-1 88-97

ProtHum:ref|NP_004838.1|
MATCHES:9/9 POS:90-98
interferon gamma responsive transcript [Homo sapiens]
ProtHum:ref|NP_001614.2|
MATCHES:9/9 POS:78-86
allograft inflammatory factor 1; interferon gamma responsive transcript [Homo sapiens]

Supports expression at the protein level

HEATLRCWAL

MHC class I 196-205

ProtHum:ref|NP_002107.1|
MATCHES:10/10 POS:221-230
major histocompatibility complex, class I, A [Homo sapiens]
ProtHum:ref|NP_061823.1|
MATCHES:10/10 POS:218-227
major histocompatibility complex, class I, F [Homo sapiens]
ProtHum:ref|NP_005505.1|
MATCHES:10/10 POS:221-230
major histocompatibility complex, class I, B [Homo sapiens]

Supports expression at the protein level

HEETPPTTS

c-myc 241-249

ProtHum:ref|NP_002458.1|
MATCHES:9/9 POS:241-249
v-myc avian myelocytomatosis viral oncogene homolog; Avian myelocytomatosis viral (v-myc) oncogene homolog; C-MYC [Homo sapiens]

Supports expression at the protein level

HHSDGSVSL

Tapasin 354-362

ProtHum:ref|NP_003181.1|
MATCHES:9/9 POS:354-362
TAP binding protein (tapasin); TAP-binding protein (tapasin) [Homo sapiens]

Supports expression at the protein level

HHSGAKVVL

Chaperonin con. TCP-1 282-290

ProtHum:ref|NP_006420.1|
MATCHES:9/9 POS:282-290
chaperonin containing TCP1, subunit 7 (eta); chaperonin containing t-complex polypeptide 1, eta subunit [Homo sapiens]

Supports expression at the protein level

HHYSGNNIEL

60S ribosomal protein L30 71-80

ProtHum:ref|NP_000980.1|
MATCHES:10/10 POS:72-81
ribosomal protein L30 [Homo sapiens]

Supports expression at the protein level

HLIDYLVTS

Carboxypeptidase M 91-99

ProtHum:ref|NP_001865.1|
MATCHES:9/9 POS:95-103
carboxypeptidase M precursor [Homo sapiens]

Supports expression at the protein level

HLPETKFSEL

AIM1 (non-lens beta

ChrHum:ref|NT_026296.1|Hs6_26463
MATCHES:10/10 POS:20712-20741(+)
Homo sapiens chromosome 6 working draft sequence segment
nr:gi|12643308|sp|Q9Y4K1|AIM1_HUMAN
MATCHES:10/10 POS:942-951
ABSENT IN MELANOMA 1 PROTEIN
nr:gi|2072425|gb|AAB53791.1|
MATCHES:10/10 POS:856-865
(U83115) non-lens beta gamma-crystallin like protein [Homo sapiens]

Supports expression at the protein level

HLPSDFTPAV

Hemoglobine (bovine) 112-121

nr:gi|122476|sp|P21379|HBA_RANTA
MATCHES:10/10 POS:112-121
HEMOGLOBIN ALPHA CHAIN pir||S13481 hemoglobin alpha chain - reindeer
nr:gi|122391|sp|P11753|HBA_CYNSP
MATCHES:10/10 POS:112-121
HEMOGLOBIN ALPHA CHAIN pir||A29392 hemoglobin alpha chain - Indian short-nosed fruit bat
nr:gi|122343|sp|P01971|HBA_ALCAA
MATCHES:10/10 POS:112-121
HEMOGLOBIN ALPHA CHAIN pir||HAEKN hemoglobin alpha chain - European moose

2 Potential SNPs

HMYIFLHTV

Unknown

ChrHum:ref|NT_010974.3|Hs18_11131
MATCHES:8/9 POS:344662-344685(+)
Homo sapiens chromosome 18 working draft sequence segment
ChrHum:ref|NT_007592.3|Hs6_7749
MATCHES:8/9 POS:8989470-8989496(+)
Homo sapiens chromosome 6 working draft sequence segment
nr:gi|13385128|ref|NP_079937.1|
MATCHES:8/9 POS:60-67
RIKEN cDNA 2810011N17 gene [Mus musculus] dbj|BAB26397.1| (AK009621) putative [Mus musculus] dbj|BAB28432.1| (AK012718) putative [Mus musculus]
nr:gi|12805353|gb|AAH02146.1|AAH02146
MATCHES:8/9 POS:60-67
(BC002146) Similar to HSPC160 protein [Mus musculus] dbj|BAB22207.1| (AK002583) putative [Mus musculus] dbj|BAB28864.1| (AK013455) putative [Mus musculus]
nr:gi|12849592|dbj|BAB28407.1|
MATCHES:8/9 POS:44-51
(AK012681) putative [Mus musculus]

HPKYKTEL

Tristetraproline 139-146

ProtHum:ref|NP_008818.1|
MATCHES:8/8 POS:189-196
butyrate response factor 2 (EGF-response factor 2) [Homo sapiens]
ProtHum:ref|NP_003398.1|
MATCHES:8/8 POS:139-146
zinc finger protein homologous to Zfp-36 in mouse; G0S24 [Homo sapiens]
ProtHum:ref|NP_004917.1|
MATCHES:8/8 POS:150-157
butyrate response factor 1 (EGF-response factor 1) [Homo sapiens]

Supports expression at the protein level

HQAISPRTL

HIV-1 gag p24 144-152

ChrHum:ref|NT_022853.3|Hs4_23009
MATCHES:8/9 POS:1042210-1042236(-)
Homo sapiens chromosome 4 working draft sequence segment
ChrHum:ref|NT_007861.3|Hs7_8018
MATCHES:8/9 POS:478983-479009(+)
Homo sapiens chromosome 7 working draft sequence segment
ChrHum:ref|NT_010747.3|Hs17_10904
MATCHES:8/9 POS:548874-548900(-)
Homo sapiens chromosome 17 working draft sequence segment
nr:gi|8571865|gb|AAF76903.1|AF116051_1
MATCHES:9/9 POS:144-152
(AF116051) gag protein [Human immunodeficiency virus type 1]
nr:gi|8571863|gb|AAF76902.1|AF116050_1
MATCHES:9/9 POS:144-152
(AF116050) gag protein [Human immunodeficiency virus type 1]
nr:gi|9651244|gb|AAF91104.1|AF196657_1
MATCHES:9/9 POS:126-134
(AF196657) gag protein [Human immunodeficiency virus type 1]

Human pathogen

HRAQVIYTR

40S ribosomal protein S25 103-111

ProtHum:ref|NP_001019.1|
MATCHES:9/9 POS:103-111
ribosomal protein S25 [Homo sapiens]

Supports expression at the protein level

HSILTVSEEEW

IgM heavy chain

ChrHum:ref|NT_010168.3|Hs14_10325
MATCHES:11/11 POS:968711-968743(+)
Homo sapiens chromosome 14 working draft sequence segment
nr:gi|386804|gb|AAB59421.1|
MATCHES:11/11 POS:57-67
(K01311) immunoglobulin mu chain [Homo sapiens]
nr:gi|1335135|emb|CAA33070.1|
MATCHES:11/11 POS:72-82
(X14940) IgM hv, C mu secreted form (129 AA) [Homo sapiens]
nr:gi|106378|pir||S15590
MATCHES:11/11 POS:395-405
Ig heavy chain - human

Supports expression at the protein level

HSTIMPRL

PI-CDC21 695-702

ChrHum:ref|NT_017431.3|Hs8_17587
MATCHES:8/8 POS:321744-321767(+)
Homo sapiens chromosome 8 working draft sequence segment
ChrHum:ref|NT_010956.3|Hs18_11113
MATCHES:7/8 POS:601325-601348(+)
Homo sapiens chromosome 18 working draft sequence segment
ChrHum:ref|NT_007563.3|Hs6_7720
MATCHES:7/8 POS:1024726-1024749(-)
Homo sapiens chromosome 6 working draft sequence segment
nr:gi|940536|emb|CAA52801.1|
MATCHES:8/8 POS:755-762
(X74794) P1 Cdc21 protein [Homo sapiens] prf||2115257A Cdc21-like protein [Homo sapiens]
nr:gi|2754697|gb|AAC52018.1|
MATCHES:8/8 POS:695-702
(U63630) MCM4 [Homo sapiens]
nr:gi|12848061|dbj|BAB27813.1|
MATCHES:8/8 POS:694-701
(AK011743) putative [Mus musculus]

Supports expression at the protein level

HSTISLQM

Calponin H2 D83735

ProtHum:ref|NP_004359.1|
MATCHES:8/8 POS:203-210
calponin 2; Calonin 2 [Homo sapiens]
ProtHum:ref|NP_001830.1|
MATCHES:7/8 POS:240-247
calponin 3; calponin, acidic [Homo sapiens]

Supports expression at the protein level

HTSDVPGKLIY

Cell surface adhesion protein 520-530

ProtHum:ref|NP_000202.1|
MATCHES:11/11 POS:520-530
integrin beta chain, beta 2 precursor; cell surface adhesion glycoprotein (LFA-1/CR3/P150,959 beta subunit precursor); Integrin, beta-2 (antigen CD18 (p95), lymphocyte function-associated [Homo sapiens]

Supports expression at the protein level

HVPEHAVVL

Fatty acid synthase (rat) 751-759

ProtHum:ref|NP_004095.1|
MATCHES:9/9 POS:749-757
fatty acid synthase [Homo sapiens]

Supports expression at the protein level

IAAGIFNDL

Proteasome Su Z 202-210

ProtHum:ref|NP_002790.1|
MATCHES:9/9 POS:202-210
proteasome (prosome, macropain) subunit, beta type, 7; Z [Homo sapiens]

Supports expression at the protein level

IADMGHLKY

Proliferating cell nuclear antigen

ProtHum:ref|NP_002583.1|
MATCHES:9/9 POS:241-249
proliferating cell nuclear antigen [Homo sapiens]

Supports expression at the protein level

IAIIPSKKL

40S ribosomal protein S17 37-45

ProtHum:ref|NP_001012.1|
MATCHES:9/9 POS:38-46
ribosomal protein S17 [Homo sapiens]

Supports expression at the protein level

IAPTGHSL

Septin 2 152-159

ProtHum:ref|NP_060713.1|
MATCHES:8/8 POS:154-161
hypothetical protein FLJ10849 [Homo sapiens]
ProtHum:ref|NP_061979.1|
MATCHES:7/8 POS:165-172
septin 3 [Homo sapiens]

Supports expression at the protein level

IEVDPDTKEML

40S ribosomal protein S17 95-105

ProtHum:ref|NP_001012.1|
MATCHES:11/11 POS:96-106
ribosomal protein S17 [Homo sapiens]

Supports expression at the protein level

IHDPGRGAPL

60S ribosomal protein L8 49-58

ProtHum:ref|NP_000964.1|
MATCHES:10/10 POS:49-58
ribosomal protein L8 [Homo sapiens]

Supports expression at the protein level

IHEDSTNRRRL

HSP90 beta 440-450

ProtHum:ref|NP_031381.1|
MATCHES:11/11 POS:441-451
heat shock 90kD protein 1, beta; Heat-shock 90kD protein-1, beta [Homo sapiens]

Supports expression at the protein level

IHEPEPHIL

CKS 59-67

ProtHum:ref|NP_001818.1|
MATCHES:9/9 POS:59-67
CDC28 protein kinase 2; CKS1(S. cerevisiae Cdc28/Cdc2 kinase subunit) homolog-2 [Homo sapiens]
ProtHum:ref|NP_001817.1|
MATCHES:9/9 POS:59-67
CDC28 protein kinase 1; CKS1(S. cerevisiae Cdc28/Cdc2 kinase subunit) homolog-1 [Homo sapiens]

Supports expression at the protein level

IHSPVVNEL

Unknown

ProtHum:ref|NP_057018.1|
MATCHES:9/9 POS:107-115
nucleolar protein NOP5/NOP58 [Homo sapiens]

Supports expression at the protein level

IKADHVSTY

HLA-DP 32-40

nr:gi|122204|sp|P20036|HA2Q_HUMAN
MATCHES:9/9 POS:32-40
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DP ALPHA CHAIN PRECURSOR (HLA-SB ALPHA CHAIN) (MHC CLASS II DP3-ALPHA) (DP(W3)) (DP(W4)) pir||HLHUSB MHC class II histocompatibility antigen HLA-DP alpha-1 chain precursor - human emb|CAA26887.1| (X03100) class II antigen [Homo sapiens] gb|AAA63220.1| (M27487) MHC class II DP3-alpha [Homo sapiens]
nr:gi|5713148|gb|AAD47826.1|
MATCHES:9/9 POS:1-9
(AF165160) MHC class II HLA-DPA1 antigen [Homo sapiens]
nr:gi|758100|emb|CAA25143.1|
MATCHES:9/9 POS:5-13
(X00457) SB classII histocompatibility antigen alpha- chain [Homo sapiens]

Supports expression at the protein level

ILAPPVVKLLV

Unknown

N/A

ILDQKINEV

Ornithin decarboxylase 23-31

ProtHum:ref|NP_002530.1|
MATCHES:9/9 POS:23-31
ornithine decarboxylase 1 [Homo sapiens]

Supports expression at the protein level

ILFGHENRV

G protein �-5 SU 320-329

ProtHum:ref|NP_057278.1|
MATCHES:9/9 POS:250-258
hypothetical protein [Homo sapiens]
ProtHum:ref|NP_006569.1|
MATCHES:9/9 POS:320-328
guanine nucleotide binding protein (G protein), beta 5; G protein beta 5 [Homo sapiens]

Supports expression at the protein level

ILGPPGSVY

Ubiquitin-protein ligase 83-91

ProtHum:ref|NP_003332.1|
MATCHES:9/9 POS:83-91
ubiquitin-conjugating enzyme E2E 1 (homologous to yeast UBC4/5); UbcH6 [Homo sapiens]
ProtHum:ref|NP_006348.1|
MATCHES:9/9 POS:97-105
ubiquitin-conjugating enzyme E2E 3 (homologous to yeast UBC4/5) [Homo sapiens]

Supports expression at the protein level

ILKQKIADL

IL-6 precursor (bovine) 153-161

ChrHum:ref|NT_011098.3|Hs19_11255
MATCHES:8/9 POS:156889-156915(+)
Homo sapiens chromosome 19 working draft sequence segment
nr:gi|124346|sp|P26892|IL6_BOVIN
MATCHES:9/9 POS:153-161
INTERLEUKIN-6 PRECURSOR (IL-6) pir||A56610 interleukin-6 precursor - bovine emb|CAA40572.1| (X57317) interleukin-6 [Bos taurus]
nr:gi|12834370|dbj|BAB22884.1|
MATCHES:8/9 POS:173-181
(AK003604) putative [Mus musculus]
nr:gi|12963555|ref|NP_075664.1|
MATCHES:8/9 POS:260-268
RIKEN cDNA 1190017B19 gene [Mus musculus] gb|AAF87102.1|AF284573_1 (AF284573) Nit protein 2 [Mus musculus] dbj|BAB23354.1| (AK004535) putative [Mus musculus]

ILMEHIHKL

60S ribosomal protein L19 137-145

ProtHum:ref|NP_000972.1|
MATCHES:9/9 POS:137-145
ribosomal protein L19 [Homo sapiens]

Supports expression at the protein level

IMKDKDNFW

ARP2 364-372

ProtHum:ref|NP_005713.1|
MATCHES:9/9 POS:364-372
ARP2 (actin-related protein 2, yeast) homolog [Homo sapiens]

Supports expression at the protein level

IPKLKNVKR

Unknown

ChrHum:ref|NT_006367.3|Hs4_6524
MATCHES:8/9 POS:110840-110866(-)
Homo sapiens chromosome 4 working draft sequence segment
ChrHum:ref|NT_010036.3|Hs14_10193
MATCHES:8/9 POS:545193-545219(-)
Homo sapiens chromosome 14 working draft sequence segment
nt:ref|NC_001144.1|
MATCHES:8/9 POS:621954-621980(-)
Saccharomyces cerevisiae chromosome XII, complete chromosome sequence
nt:gb|U20865.1|YSCL9672
MATCHES:8/9 POS:4656-4682(-)
Saccharomyces cerevisiae chromosome XII cosmid

IPPEVNRQL

Unknown

ChrHum:ref|NT_006936.3|Hs5_7093
MATCHES:8/9 POS:1236761-1236787(-)
Homo sapiens chromosome 5 working draft sequence segment
ChrHum:ref|NT_009215.3|Hs11_9372
MATCHES:8/9 POS:3359358-3359384(-)
Homo sapiens chromosome 11 working draft sequence segment
nt:gb|AF024504.2|AF024504
MATCHES:8/9 POS:19740-19766(+)
Arabidopsis thaliana chromosome II section 103 of 255 of the complete sequence. Sequence from clones T17A5, T13L16
nt:gb|AC016568.4|AC016568
MATCHES:8/9 POS:33019-33045(-)
Homo sapiens chromosome 5 clone CTC-566C5, complete sequence
nt:dbj|AP001150.4|AP001150
MATCHES:8/9 POS:91987-92013(-)
Homo sapiens genomic DNA, chromosome 11q, clone:RP11-778O17, complete sequence

IPYHIVNIV

Serine tRNA ligase 357-365

ProtHum:ref|NP_006504.1|
MATCHES:9/9 POS:357-365
seryl-tRNA synthetase [Homo sapiens]

Supports expression at the protein level

IQPGRGFVLY

RNA Polymerase II

ProtHum:ref|NP_002687.1|
MATCHES:10/10 POS:59-68
polymerase (RNA) II (DNA directed) polypeptide G [Homo sapiens]

Supports expression at the protein level

IRHNKDRKV

60S ribosomal protein L18 4-12

ProtHum:ref|NP_000970.1|
MATCHES:9/9 POS:5-13
ribosomal protein L18 [Homo sapiens]

Supports expression at the protein level

IRKPYIWEY

Glutamyl-tRNA synthase 343-351

ProtHum:ref|NP_004437.1|
MATCHES:9/9 POS:343-351
glutamyl-prolyl tRNA synthetase; glutamate tRNA ligase [Homo sapiens]

Supports expression at the protein level

ISDSNPFLTQ

E46 protein 407-416

ProtHum:ref|NP_037368.1|
MATCHES:10/10 POS:407-416
like mouse brain protein E46 [Homo sapiens]

Supports expression at the protein level
Spans splice site

ISPRTLNAW

HIV-1 gag 147-155

nr:gi|4324823|gb|AAD17087.1|
MATCHES:9/9 POS:144-152
(AF110969) gag-pol polyprotein [Human immunodeficiency virus type 1]
nr:gi|3252967|gb|AAD12114.1|
MATCHES:9/9 POS:141-149
(AF067159) gag protein [Human immunodeficiency virus type 1]
nr:gi|912568|gb|AAB38060.1|
MATCHES:9/9 POS:147-155
(U29262) gag polyprotein [Human immunodeficiency virus type 1]

Human pathogen

ITEDMGHLKY

Unknown

N/A

ITNTVGSSI

Hexosephosphate aminotransferase 445-453

ProtHum:ref|NP_002047.1|
MATCHES:9/9 POS:446-454
glucosamine-fructose-6-phosphate aminotransferase [Homo sapiens]
ProtHum:ref|NP_005101.1|
MATCHES:8/9 POS:447-455
glutamine-fructose-6-phosphate transaminase 2; glutamine: fructose-6-phosphate aminotransferase 2 [Homo sapiens]

Supports expression at the protein level

ITPTGTHPL

Granulin 162-170

ProtHum:ref|NP_002078.1|
MATCHES:9/9 POS:179-187
granulin [Homo sapiens]

Supports expression at the protein level

ITSQDVLHSW

Cytochrome C oxidase 154-163

ChrHum:ref|NT_005322.3|Hs2_5479
MATCHES:9/10 POS:613358-613384(+)
Homo sapiens chromosome 2 working draft sequence segment
ChrHum:ref|NT_023716.3|Hs8_23872
MATCHES:9/10 POS:16519-16545(+)
Homo sapiens chromosome 8 working draft sequence segment
ChrHum:ref|NT_006721.3|Hs5_6878
MATCHES:9/10 POS:106369-106395(-)
Homo sapiens chromosome 5 working draft sequence segment
nr:gi|1040994|gb|AAA79953.1|
MATCHES:10/10 POS:135-144
(U36845) cytochrome c oxidase subunit II [Aotus lemurinus]
nr:gi|2245560|gb|AAB63450.1|
MATCHES:10/10 POS:116-125
(AF004339) cytochrome c oxidase subunit II [Homo sapiens]
nr:gi|1040988|gb|AAA79950.1|
MATCHES:10/10 POS:135-144
(U36846) cytochrome c oxidase subunit II [Aotus azarai]

Potential SNP

ITTKAISRF

Unknown

ProtHum:ref|NP_005989.1|
MATCHES:8/9 POS:159-167
chaperonin containing TCP1, subunit 3 (gamma); TCP1 (t-complex-1) ring complex, polypeptide 5 [Homo sapiens]

IVLPEKDSW

HIV-1 gag 244-252

nr:gi|4205064|gb|AAD10936.1|
MATCHES:9/9 POS:308-316
(U69592) pol polyprotein [Human immunodeficiency virus type 1]
nr:gi|4205055|gb|AAD10928.1|
MATCHES:9/9 POS:308-316
(U69591) pol polyprotein [Human immunodeficiency virus type 1]
nr:gi|4205046|gb|AAD10920.1|
MATCHES:9/9 POS:308-316
(U69590) pol polyprotein [Human immunodeficiency virus type 1] gb|AAD10944.1| (U69593) pol polyprotein [Human immunodeficiency virus type 1]

Human pathogen

IYPQNVILY

Unknown

ChrHum:ref|NT_008722.3|Hs10_8879
MATCHES:8/9 POS:39827-39853(+)
Homo sapiens chromosome 10 working draft sequence segment

KAGQVVTIW

Lamin C 490-498

ProtHum:ref|NP_005563.1|
MATCHES:9/9 POS:490-498
lamin A/C [Homo sapiens]
ProtHum:ref|NP_005564.1|
MATCHES:8/9 POS:491-499
lamin B1 [Homo sapiens]

Supports expression at the protein level
Spans splice site

KAIEENNNF

Stathmin 85-93

ProtHum:ref|NP_005554.1|
MATCHES:9/9 POS:85-93
leukemia-associated phosphoprotein p18; metablastin; prosolin; oncoprotein 18; phosphoprotein 19; stathmin [Homo sapiens]
ProtHum:ref|NP_110422.1|
MATCHES:9/9 POS:129-137
stathmin-like-protein RB3 [Homo sapiens]
ProtHum:ref|NP_008960.1|
MATCHES:8/9 POS:119-127
superiorcervical ganglia, neural specific 10; neuronal growth-associated protein (silencer element); superior cervical ganglia, neural specific 10 [Homo sapiens]

Supports expression at the protein level

KEFQEHYEY

Unknown

N/A

KEHVIQNAF

EBV EBNA-6 335-343

nr:gi|628137|pir||S33015
MATCHES:9/9 POS:215-223
hypothetical protein - human herpesvirus
nr:gi|330359|gb|AAA45879.1|
MATCHES:9/9 POS:335-343
(M23028) nuclear antigen precursor [Human herpesvirus 4]
nr:gi|9625618|ref|NP_039869.1|
MATCHES:9/9 POS:335-343
EBNA3C (EBNA 4B) latent protein [Human herpesvirus 4] sp|P03204|EBN6_EBV EBNA-6 NUCLEAR PROTEIN (EBNA-3C) (EBNA-4B) emb|CAA24859.1| (V01555) EBNA3C (EBNA 4B) latent protein [Human herpesvirus 4]

Human pathogen

KEIELILEY

Unknown

ChrHum:ref|NT_008735.3|Hs10_8892
MATCHES:8/9 POS:592628-592654(-)
Homo sapiens chromosome 10 working draft sequence segment
nr:gi|7296432|gb|AAF51719.1|
MATCHES:8/9 POS:430-438
(AE003594) CG6049 gene product [Drosophila melanogaster]

KEKYIDQEEL

HSP90 alpha 280-288

ProtHum:ref|NP_005339.1|
MATCHES:10/10 POS:281-290
heat shock 90kD protein 1, alpha [Homo sapiens]
ProtHum:ref|NP_031381.1|
MATCHES:10/10 POS:273-282
heat shock 90kD protein 1, beta; Heat-shock 90kD protein-1, beta [Homo sapiens]

Supports expression at the protein level

KESTLHLVL

Ubiquitin 63-71

ProtHum:ref|NP_002945.1|
MATCHES:9/9 POS:63-71
ribosomal protein S27a [Homo sapiens]
ProtHum:ref|NP_003324.1|
MATCHES:9/9 POS:63-71
ubiquitin A-52 residue ribosomal protein fusion product 1 [Homo sapiens]
ProtHum:ref|NP_061828.1|
MATCHES:9/9 POS:63-71
ubiquitin B [Homo sapiens]

Supports expression at the protein level

KEVGVDVALYA

Unknown

N/A

KFDPVNLVY

Unknown

N/A

KGFSEEHNTW

Heterochromatin protein HP1 42-51

ProtHum:ref|NP_036249.1|
MATCHES:10/10 POS:42-51
chromobox homolog 5 (Drosophila HP1 alpha) [Homo sapiens]

Supports expression at the protein level
Spans splice site

KGPPAALTL

Cytokine receptor 21-29

ProtHum:ref|NP_005746.1|
MATCHES:9/9 POS:22-30
Epstein-Barr virus induced gene 3; cytokine receptor induced by latent Epstein-Barr virus infection [Homo sapiens]

Supports expression at the protein level
Spans splice site

KIAGYVTHL

40S ribosomal protein S17 49-57

ProtHum:ref|NP_001012.1|
MATCHES:9/9 POS:49-57
ribosomal protein S17 [Homo sapiens]

Supports expression at the protein level

KIKSFEVVF

EST

ProtHum:ref|NP_006463.2|
MATCHES:9/9 POS:6-14
upregulated by 1,25-dihydroxyvitamin D-3 [Homo sapiens]

Supports expression at the protein level

KIKSFVKVY

60S ribosomal protein L27 66-74

ProtHum:ref|NP_000979.1|
MATCHES:9/9 POS:67-75
ribosomal protein L27 [Homo sapiens]

Supports expression at the protein level

KIMKWNYER

Unknown

N/A

KIVRKPGMA

Unknown

ChrHum:ref|NT_022624.2|Hs3_22780
MATCHES:8/9 POS:80958-80984(-)
Homo sapiens chromosome 3 working draft sequence segment

KKREEAPSL

Fibrinogen beta-chain 51-59

ProtHum:ref|NP_005132.1|
MATCHES:9/9 POS:51-59
fibrinogen, beta chain preproprotein; fibrinogen, B beta polypeptide [Homo sapiens]

Supports expression at the protein level

KKYQKSTEL

Unknown

nr:gi|7498329|pir||T20427
MATCHES:8/9 POS:51-59
hypothetical protein E03A3.4 - Caenorhabditis elegans emb|CAA86229.1| (Z38112) contains similarity to Pfam domain: PF00125 (Core histone H2A/H2B/H3/H4), Score=59.1, E-value=3e-14, N=1 [Caenorhabditis elegans]
nr:gi|19611|emb|CAA31966.1|
MATCHES:8/9 POS:40-48
(X13675) histone H3 (AA 1-123) [Medicago sativa] emb|CAA05554.1| (AJ002555) histone H3 [Pisum sativum]
nr:gi|81850|pir||S04521
MATCHES:8/9 POS:36-44
histone H3 (clone pH3c-1) - alfalfa (fragment) emb|CAA31967.1| (X13676) histone H3 (AA 1-120) [Medicago sativa]

KLDELYGTW

60S ribosomal protein L4 257-265

ProtHum:ref|NP_000959.1|
MATCHES:9/9 POS:258-266
ribosomal protein L4 [Homo sapiens]

Supports expression at the protein level

KLFEKVYNY

Unknown

nt:emb|Z78062.1|CEF16D3
MATCHES:8/9 POS:24561-24584(+)
Caenorhabditis elegans cosmid F16D3, complete sequence

KLFKNILYK

Unknown

ChrHum:ref|NT_006129.3|Hs4_6286
MATCHES:8/9 POS:428747-428773(+)
Homo sapiens chromosome 4 working draft sequence segment
ChrHum:ref|NT_005223.3|Hs2_5380
MATCHES:8/9 POS:412059-412085(+)
Homo sapiens chromosome 2 working draft sequence segment
ChrHum:ref|NT_011669.3|HsX_11826
MATCHES:8/9 POS:509270-509296(-)
Homo sapiens chromosome X working draft sequence segment
nt:ref|NC_000857.1|
MATCHES:8/9 POS:15491-15517(-)
Ceratitis capitata complete mitochondrial genome
nt:emb|AJ242872.1|CCA242872
MATCHES:8/9 POS:15491-15517(-)
Ceratitis capitata complete mitochondrial genome
nt:gb|AC016772.8|AC016772
MATCHES:8/9 POS:94783-94809(-)
Homo sapiens clone RP11-567N19, complete sequence

KLFKVTFSY

Unknown

ChrHum:ref|NT_026494.1|HsX_26661
MATCHES:8/9 POS:144067-144093(-)
Homo sapiens chromosome X working draft sequence segment
ChrHum:ref|NT_022453.3|Hs3_22609
MATCHES:8/9 POS:389469-389495(+)
Homo sapiens chromosome 3 working draft sequence segment
ChrHum:ref|NT_004498.3|Hs1_4655
MATCHES:8/9 POS:957956-957982(-)
Homo sapiens chromosome 1 working draft sequence segment
nt:gb|AC016742.10|AC016742
MATCHES:8/9 POS:118398-118421(-)
Homo sapiens clone RP11-470O21, complete sequence

KLFNIMVTY

Unknown

ChrHum:ref|NT_011512.3|Hs21_11669
MATCHES:8/9 POS:17335611-17335637(-)
Homo sapiens chromosome 21 working draft sequence segment
ChrHum:ref|NT_008813.3|Hs10_8970
MATCHES:8/9 POS:515606-515632(-)
Homo sapiens chromosome 10 working draft sequence segment
nt:dbj|AP000567.2|AP000567
MATCHES:8/9 POS:6842-6868(-)
Homo sapiens genomic DNA, chromosome 21q22.1, clone:B41N19, SOD-AML region, complete sequence
nt:dbj|AP001708.1|AP001708
MATCHES:8/9 POS:46611-46637(-)
Homo sapiens genomic DNA, chromosome 21q, section 52/105

KLFVKVYNY

Unknown

ProtHum:ref|NP_000979.1|
MATCHES:8/9 POS:69-77
ribosomal protein L27 [Homo sapiens]

KLHKQRAKS

Unknown

mRNAHum:gi|4507952|ref|NM_003406.1|
MATCHES:8/9 POS:410-433(+)
Homo sapiens tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide (YWHAZ), mRNA

KLLEPVLLL

40S ribosomal protein S16 49-57

ProtHum:ref|NP_001011.1|
MATCHES:9/9 POS:50-58
ribosomal protein S16 [Homo sapiens]

Supports expression at the protein level

KLPAQFYIL

Unknown

ChrHum:ref|NT_017168.3|Hs7_17324
MATCHES:8/9 POS:2607849-2607875(-)
Homo sapiens chromosome 7 working draft sequence segment
ChrHum:ref|NT_009952.3|Hs13_10109
MATCHES:8/9 POS:1620056-1620079(+)
Homo sapiens chromosome 13 working draft sequence segment
ChrHum:ref|NT_009151.3|Hs11_9308
MATCHES:8/9 POS:8858875-8858898(-)
Homo sapiens chromosome 11 working draft sequence segment
nt:emb|AL160393.13|AL160393
MATCHES:8/9 POS:54141-54164(+)
Human DNA sequence from clone RP11-195A5 on chromosome 13, complete sequence [Homo sapiens]
nt:gb|AC003991.1|AC003991
MATCHES:8/9 POS:91897-91923(-)
Human BAC clone CTB-167B5 from 7q21, complete sequence [Homo sapiens]
nt:dbj|AP000620.4|AP000620
MATCHES:8/9 POS:21530-21553(+)
Homo sapiens genomic DNA, chromosome 11q clone:CMB9-36F4, complete sequences

KLYEKVYTYK

Unknown

N/A

KMFNITVTY

Unknown

ChrHum:ref|NT_022853.3|Hs4_23009
MATCHES:8/9 POS:1262510-1262536(+)
Homo sapiens chromosome 4 working draft sequence segment
ChrHum:ref|NT_025916.2|Hs18_26072
MATCHES:8/9 POS:56429-56452(+)
Homo sapiens chromosome 18 working draft sequence segment
ChrHum:ref|NT_024350.1|Hs11_24506
MATCHES:8/9 POS:73340-73363(+)
Homo sapiens chromosome 11 working draft sequence segment
nt:gb|AC017091.8|AC017091
MATCHES:8/9 POS:197264-197290(-)
Homo sapiens clone RP11-506N2, complete sequence
nt:emb|Z99288.1|CEZK262
MATCHES:8/9 POS:31555-31581(-)
Caenorhabditis elegans cosmid ZK262, complete sequence
nt:gb|U90093.1|U90093
MATCHES:8/9 POS:73340-73363(+)
Human Chromosome 11 pac pDJ298k13, complete sequence [Homo sapiens]

KMKEIAEAY

HSP70-1 126-134

ProtHum:ref|NP_068814.1|
MATCHES:9/9 POS:127-135
heat shock 70kD protein 2; Heat-shock 70kD protein-2 [Homo sapiens]
ProtHum:ref|NP_005337.1|
MATCHES:9/9 POS:126-134
heat shock 70kD protein 1B [Homo sapiens]
ProtHum:ref|NP_005336.2|
MATCHES:9/9 POS:126-134
heat shock 70kD protein 1A [Homo sapiens]

Supports expression at the protein level

KPIVQYDNF

P. falciparum LSA-1 1786-1794

ChrHum:ref|NT_023463.2|Hs6_23619
MATCHES:8/9 POS:160670-160696(-)
Homo sapiens chromosome 6 working draft sequence segment
ChrHum:ref|NT_008682.3|Hs10_8839
MATCHES:8/9 POS:3512855-3512881(-)
Homo sapiens chromosome 10 working draft sequence segment
nr:gi|10048253|gb|AAG12324.1|AF246996_1
MATCHES:9/9 POS:141-149
(AF246996) liver stage-specific antigen-1 [Plasmodium falciparum]
nr:gi|3114462|pdb|1A1O|C
MATCHES:9/9 POS:1-9
Chain C, Mhc Class I Molecule B5301 Complexed With Peptide Ls6 (Kpivqydnf) From The Malaria Parasite P. Falciparum
nr:gi|510184|emb|CAA82975.1|
MATCHES:9/9 POS:370-378
(Z30320) liver stage antigen-1 [Plasmodium falciparum]

Human pathogen

KQFAEMYVAKF

Elongation factor 2 226-236

ProtHum:ref|NP_001952.1|
MATCHES:11/11 POS:226-236
eukaryotic translation elongation factor 2 [Homo sapiens]

Supports expression at the protein level

KQLDDLKVEL

60S ribosomal protein L19 18-27

ProtHum:ref|NP_009140.1|
MATCHES:10/10 POS:19-28
ribosomal protein L35 [Homo sapiens]

Supports expression at the protein level

KRFEGLTQR

Unknown

ProtHum:ref|NP_009202.1|
MATCHES:8/9 POS:446-454
serine threonine protein kinase [Homo sapiens]
ChrHum:ref|NT_009622.3|Hs12_9779
MATCHES:9/9 POS:154129-154155(+)
Homo sapiens chromosome 12 working draft sequence segment
ChrHum:ref|NT_007239.3|Hs6_7396
MATCHES:8/9 POS:837657-837683(-)
Homo sapiens chromosome 6 working draft sequence segment
nr:gi|4589574|dbj|BAA76809.1|
MATCHES:9/9 POS:443-451
(AB023182) KIAA0965 protein [Homo sapiens]
nr:gi|6005814|ref|NP_009202.1|
MATCHES:8/9 POS:446-454
serine threonine protein kinase [Homo sapiens] pir||I38133 protein kinase (EC 2.7.1.-) Ndr - human emb|CAA84485.1| (Z35102) Ndr protein kinase [Homo sapiens] emb|CAB39180.1| (Z85986) dJ108K11.2 (Ndr protein kinase) [Homo sapiens]

Supports expression at the protein level

KRFEHWRL

Unknown

ChrHum:ref|NT_008699.3|Hs10_8856
MATCHES:7/8 POS:1566202-1566225(-)
Homo sapiens chromosome 10 working draft sequence segment
ChrHum:ref|NT_008144.3|Hs8_8301
MATCHES:7/8 POS:1331731-1331754(-)
Homo sapiens chromosome 8 working draft sequence segment
ChrHum:ref|NT_022135.3|Hs2_22291
MATCHES:7/8 POS:840382-840405(-)
Homo sapiens chromosome 2 working draft sequence segment
nt:dbj|AP002032.1|AP002032
MATCHES:7/8 POS:56566-56586(-)
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPH15
nt:gb|AC025519.10|AC025519
MATCHES:7/8 POS:37344-37367(-)
Homo sapiens, clone RP11-484J3, complete sequence

KRFKGQIGL

Unknown

ChrHum:ref|NT_025072.3|Hs18_25228
MATCHES:8/9 POS:72771-72797(+)
Homo sapiens chromosome 18 working draft sequence segment
ChrHum:ref|NT_008023.3|Hs8_8180
MATCHES:8/9 POS:594571-594597(+)
Homo sapiens chromosome 8 working draft sequence segment
ChrHum:ref|NT_008318.3|Hs9_8475
MATCHES:8/9 POS:647935-647961(-)
Homo sapiens chromosome 9 working draft sequence segment
nt:gb|AC000048.4|AC000048
MATCHES:8/9 POS:15233-15259(-)
Homo sapiens Chromosome 9p21 Cosmid Clone c66, complete sequence

KRFSFKKSF

MARCKS (cattle) 155-163

ProtHum:ref|NP_002347.4|
MATCHES:9/9 POS:156-164
myristoylated alanine-rich protein kinase C substrate; 80K-L; phosphomyristin [Homo sapiens]

Supports expression at the protein level

KRFSGTVRL

60S ribosomal protein L10A (Csa-19)

ProtHum:ref|NP_009035.2|
MATCHES:9/9 POS:47-55
ribosomal protein L10a; neural precursor cell expressed, developmentally down-regulated 6 [Homo sapiens]

Supports expression at the protein level

KRGILTLKY

Actin 63-71

ProtHum:ref|NP_001092.1|
MATCHES:9/9 POS:61-69
beta actin; beta cytoskeletal actin [Homo sapiens]
ProtHum:ref|NP_001605.1|
MATCHES:9/9 POS:61-69
actin, gamma 1 propeptide; cytoskeletal gamma-actin; actin, cytoplasmic 2 [Homo sapiens]
ProtHum:ref|NP_005150.1|
MATCHES:9/9 POS:63-71
actin, alpha, cardiac muscle precursor [Homo sapiens]

Supports expression at the protein level

KRINAGLYW

Unknown

ChrHum:ref|NT_011512.3|Hs21_11669
MATCHES:8/9 POS:23895393-23895416(+)
Homo sapiens chromosome 21 working draft sequence segment

KRKKAYADF

Cytochrome C oxidase (bovine) 42-50

ProtHum:ref|NP_004365.1|
MATCHES:8/9 POS:44-52
cytochrome c oxidase subunit VIc [Homo sapiens]
nr:gi|117116|sp|P04038|COXH_BOVIN
MATCHES:9/9 POS:42-50
CYTOCHROME C OXIDASE POLYPEPTIDE VIC (STA) pir||OGBO6C cytochrome-c oxidase (EC 1.9.3.1) chain VIc [validated] - bovine pdb|2OCC|I Chain I, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized State pdb|2OCC|V Chain V, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized State pdb|1OCR|I Chain I, Bovine Heart Cytochrome C Oxidase In The Fully Reduced State pdb|1OCR|V Chain V, Bovine Heart Cytochrome C Oxidase In The Fully Reduced State pdb|1OCO|I Chain I, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-Bound State pdb|1OCO|V Chain V, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-Bound State pdb|1OCC|I Chain I, Structure Of Bovine Heart Cytochrome C Oxidase At The Fully Oxidized State pdb|1OCC|V Chain V, Structure Of Bovine Heart Cytochrome C Oxidase At The Fully Oxidized State pdb|1OCZ|I Chain I, Bovine Heart Cytochrome C Oxidase In Azide-Bound State pdb|1OCZ|V Chain V, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
nr:gi|4758040|ref|NP_004365.1|
MATCHES:8/9 POS:44-52
cytochrome c oxidase subunit VIc [Homo sapiens] sp|P09669|COXH_HUMAN CYTOCHROME C OXIDASE POLYPEPTIDE VIC PRECURSOR emb|CAA31624.1| (X13238) cytochrome c oxidase subunit VIc preprotein [Homo sapiens] gb|AAC73061.1| (AF067637) cytochrome c oxidase subunit VIc [Homo sapiens] gb|AAH00187.1|AAH00187 (BC000187) cytochrome c oxidase subunit VIc [Homo sapiens]
nr:gi|9506509|ref|NP_062233.1|
MATCHES:8/9 POS:35-42
cytochrome oxidase subunit VIc [Rattus norvegicus] pir||I64889 cytochrome-c oxidase (EC 1.9.3.1) chain VIc - rat gb|AAA79270.1| (M27467) cytochrome c oxidase subunit VIc [Rattus norvegicus]

Ambiguous

KRVELNGGL

Unknown

ChrHum:ref|NT_009866.3|Hs13_10023
MATCHES:8/9 POS:6271353-6271379(+)
Homo sapiens chromosome 13 working draft sequence segment
ChrHum:ref|NT_009984.3|Hs13_10141
MATCHES:8/9 POS:1069215-1069241(-)
Homo sapiens chromosome 13 working draft sequence segment
ChrHum:ref|NT_005927.3|Hs3_6084
MATCHES:8/9 POS:4280436-4280462(-)
Homo sapiens chromosome 3 working draft sequence segment
nr:gi|11359110|pir||T43224
MATCHES:8/9 POS:224-232
hypothetical protein ask2 - fission yeast (Schizosaccharomyces pombe) dbj|BAA20129.1| (D88479) ask2+ [Schizosaccharomyces pombe]

KRWQAIYKQF

Ca2+ dependent protease 172-181

ProtHum:ref|NP_001740.1|
MATCHES:10/10 POS:172-181
calpain 4 small subunit; calpain, small polypeptide; calcium-dependent protease, small subunit; calcium-activated neutral proteinase [Homo sapiens]

Supports expression at the protein level
Spans splice site

KRYKSIVKY

HFPS 191-199

ProtHum:ref|NP_001995.1|
MATCHES:9/9 POS:257-265
farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase) [Homo sapiens]

Supports expression at the protein level

KSISTAYLQW

Ig heavy chain V region

ChrHum:ref|NT_026408.1|Hs12_26575
MATCHES:10/10 POS:2820-2849(+)
Homo sapiens chromosome 12 working draft sequence segment
ChrHum:ref|NT_010168.3|Hs14_10325
MATCHES:10/10 POS:254738-254767(+)
Homo sapiens chromosome 14 working draft sequence segment
nr:gi|8249677|emb|CAB93254.1|
MATCHES:10/10 POS:65-74
(AJ289367) immunoglobulin heavy chain variable region [Homo sapiens]
nr:gi|8249667|emb|CAB93249.1|
MATCHES:10/10 POS:65-74
(AJ289359) immunoglobulin heavy chain variable region [Homo sapiens]
nr:gi|8249555|emb|CAB93193.1|
MATCHES:10/10 POS:65-74
(AJ289288) immunoglobulin heavy chain variable region [Homo sapiens]

Supports expression at the protein level

KSMETKVQF

YKL-39 (chondrocyte protein) 334-342

ProtHum:ref|NP_003991.1|
MATCHES:9/9 POS:335-343
chitinase 3-like 2; chondrocyte protein 39 [Homo sapiens]

Supports expression at the protein level
Spans splice site

KSPASDTYIVF

Nascent polypeptide complex alpha chain 112-122

ProtHum:ref|NP_005585.1|
MATCHES:11/11 POS:113-123
nascent-polypeptide-associated complex alpha polypeptide [Homo sapiens]

Supports expression at the protein level

KSTDVAKTF

L-plastin 82-90

ProtHum:ref|NP_002289.1|
MATCHES:9/9 POS:82-90
L-plastin; plastin 2; Lymphocyte cytosolic protein-1 (plasmin) [Homo sapiens]

Supports expression at the protein level

KTDEVVTLF

Unknown

ChrHum:ref|NT_006936.3|Hs5_7093
MATCHES:8/9 POS:1115250-1115273(-)
Homo sapiens chromosome 5 working draft sequence segment
ChrHum:ref|NT_015726.3|Hs1_15882
MATCHES:8/9 POS:937825-937851(+)
Homo sapiens chromosome 1 working draft sequence segment
nr:gi|7513546|pir||T42389
MATCHES:8/9 POS:1123-1130
versican precursor, splice form V0 - bovine gb|AAC24358.1| (AF060456) versican V0 splice-variant precursor [Bos taurus]
nr:gi|7513547|pir||T14274
MATCHES:8/9 POS:1123-1130
versican precursor, splice form V2 - bovine gb|AAC24360.1| (AF060458) versican V2 splice-variant precursor [Bos taurus]
nr:gi|833853|gb|AAA67565.1|
MATCHES:8/9 POS:1115-1122
(U26555) versican V2 core protein precursor [Homo sapiens]

KTGGPIYKR

Influenza A NP 91-99

nr:gi|455193|gb|AAA19206.1|
MATCHES:9/9 POS:91-99
(M81583) nucleocapsid protein [Influenza A virus]
nr:gi|455191|gb|AAA19204.1|
MATCHES:9/9 POS:91-99
(M81571) nucleocapsid protein [Influenza A virus] gb|AAA19205.1| (M81577) nucleocapsid protein [Influenza A virus]
nr:gi|13785215|emb|CAC37326.1|
MATCHES:9/9 POS:91-99
(AJ311510) nucleoprotein [Influenza A virus]

Human pathogen

KTKDIVNGL

F-actin capping protein 235-243

ProtHum:ref|NP_004921.1|
MATCHES:9/9 POS:235-243
F-actin capping protein beta subunit; Cap Z [Homo sapiens]

Supports expression at the protein level

KTRIIDVVY

40S ribosomal protein S8 74-82

ProtHum:ref|NP_001003.1|
MATCHES:9/9 POS:75-83
ribosomal protein S8 [Homo sapiens]

Supports expression at the protein level

KVFGPIHER

GlcNac-P-transferase (mouse) 371-379

ProtHum:ref|NP_001373.1|
MATCHES:8/9 POS:361-369
UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase; dolichyl-phosphate alpha-N-acetylglucosaminyltransferase; GlcNAc-1-P transferase; UDP-GlcNAc:dolichyl-phosphate N-acetylglucosaminephosphotransferase; dolichyl-phosphate N-acetylglucosaminephosphotransferase; N-acetylglucosamine-1-phosphate transferase. [Homo sapiens]
nr:gi|6681215|ref|NP_031901.1|
MATCHES:9/9 POS:371-379
dolichyl-phosphate alpha-N-acetylglucosaminephosphotransferase 2 [Mus musculus] sp|P42867|GPT_MOUSE UDP-N-ACETYLGLUCOSAMINE-- DOLICHYL-PHOSPHATE N-ACETYLGLUCOSAMINEPHOSPHOTRANSFERASE (GPT) (G1PT) (N-ACETYLGLUCOSAMINE-1-PHOSPHATE TRANSFERASE) (GLCNAC-1-P TRANSFERASE) pir||S24326 UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase (EC 2.7.8.15) - mouse emb|CAA46553.1| (X65603) GlcNAc-1-P transferase [Mus musculus]
nr:gi|12842315|dbj|BAB25555.1|
MATCHES:9/9 POS:262-270
(AK008246) putative [Mus musculus] dbj|BAB25597.1| (AK008317) putative [Mus musculus] gb|AAH03943.1|AAH03943 (BC003943) dolichyl-phosphate alpha-N-acetylglucosaminephosphotransferase 2 [Mus musculus]
nr:gi|563207|gb|AAA51872.1|
MATCHES:8/9 POS:126-134
(U15161) uridine diphosphate N-acetyl-D-glucosamine-1-phosphate transferase [Cricetulus griseus]

Putative SNP

KVVNPLFEK

60S ribosomal protein L7A 25-33

ProtHum:ref|NP_000963.1|
MATCHES:9/9 POS:26-34
ribosomal protein L7a; Ribosomal protein L7a (surfeit-3) [Homo sapiens]

Supports expression at the protein level

KVYENYPTY

DEK protein 349-357

ProtHum:ref|NP_003463.1|
MATCHES:9/9 POS:349-357
DEK oncogene (DNA binding); DEK gene [Homo sapiens]

Supports expression at the protein level
Spans splice site

KYFDEHYEY

Cyclin dependent kinase regulatory SU-2

ProtHum:ref|NP_001818.1|
MATCHES:9/9 POS:11-19
CDC28 protein kinase 2; CKS1(S. cerevisiae Cdc28/Cdc2 kinase subunit) homolog-2 [Homo sapiens]

Supports expression at the protein level

KYPENFFLL

Protein phosphatase 113-121

ProtHum:ref|NP_002699.1|
MATCHES:9/9 POS:113-121
protein phosphatase 1, catalytic subunit, alpha isoform [Homo sapiens]
ProtHum:ref|NP_002701.1|
MATCHES:9/9 POS:113-121
protein phosphatase 1, catalytic subunit, gamma isoform [Homo sapiens]
ProtHum:ref|NP_002700.1|
MATCHES:9/9 POS:112-120
protein phosphatase 1, catalytic subunit, beta isoform [Homo sapiens]

Supports expression at the protein level

LAKEKLAD

Unknown

ProtHum:ref|NP_036469.1|
MATCHES:7/8 POS:192-199
nasopharyngeal epithelium specific protein 1 [Homo sapiens]

LAVHPSGVAL

IFN-induced 15 kD protein 45-54

ProtHum:ref|NP_005092.1|
MATCHES:10/10 POS:45-54
interferon-stimulated protein, 15 kDa [Homo sapiens]

Supports expression at the protein level

LERPGGNEI

Fibrinogen alpha-chain 226-234

ProtHum:ref|NP_000499.1|
MATCHES:9/9 POS:261-269
fibrinogen, alpha chain, isoform alpha-E preproprotein; fibrinogen, A alpha polypeptide [Homo sapiens]
ProtHum:ref|NP_068657.1|
MATCHES:9/9 POS:261-269
fibrinogen, alpha chain, isoform alpha preproprotein; fibrinogen, A alpha polypeptide [Homo sapiens]

Supports expression at the protein level

LLDVPTAAV

IP-30 signal sequence 27-35

ProtHum:ref|NP_006323.1|
MATCHES:9/9 POS:27-35
interferon, gamma-inducible protein 30 [Homo sapiens]

Supports expression at the protein level

LLIENVASL

Glutathione peroxidase 38-46

ProtHum:ref|NP_000572.1|
MATCHES:9/9 POS:38-46
glutathione peroxidase 1 [Homo sapiens]
ProtHum:ref|NP_002074.1|
MATCHES:8/9 POS:31-39
gastrointestinal glutathione peroxidase 2 [Homo sapiens]

Supports expression at the protein level

LLLDVPTAAV

IP-30 signal sequence 26-35

ProtHum:ref|NP_006323.1|
MATCHES:10/10 POS:26-35
interferon, gamma-inducible protein 30 [Homo sapiens]

Supports expression at the protein level

LLLDVPTAAVQ

IP-30 signal sequence 26-36

ProtHum:ref|NP_006323.1|
MATCHES:11/11 POS:26-36
interferon, gamma-inducible protein 30 [Homo sapiens]

Supports expression at the protein level

LLLDVPTAAVQA

IP-30 signal sequence 26-37

ProtHum:ref|NP_006323.1|
MATCHES:12/12 POS:26-37
interferon, gamma-inducible protein 30 [Homo sapiens]

Supports expression at the protein level

LPFTVILV

Guanine nucleotide related protein

ChrHum:ref|NT_022824.3|Hs4_22980
MATCHES:8/8 POS:444321-444344(+)
Homo sapiens chromosome 4 working draft sequence segment
ChrHum:ref|NT_022552.2|Hs3_22708
MATCHES:8/8 POS:74533-74556(-)
Homo sapiens chromosome 3 working draft sequence segment
ChrHum:ref|NT_004771.3|Hs1_4928
MATCHES:8/8 POS:700705-700728(-)
Homo sapiens chromosome 1 working draft sequence segment
nr:gi|6755288|ref|NP_035375.1|
MATCHES:8/8 POS:562-569
RAS protein-specific guanine nucleotide-releasing factor 1; RAS guanyl releasing protein 3; GRF beta; Ras guanine release factor beta [Mus musculus] sp|P27671|GNRP_MOUSE GUANINE NUCLEOTIDE RELEASING PROTEIN (GNRP) (RAS-SPECIFIC NUCLEOTIDE EXCHANGE FACTOR CDC25) (CDC25MM) gb|AAA02741.1| (L20899) CDC25 homolog [Mus musculus]
nr:gi|321249|pir||S28407
MATCHES:8/8 POS:560-567
guanine nucleotide-exchange activator CDC25 homolog - mouse
nr:gi|11279739|pir||B82219
MATCHES:7/8 POS:507-514
transporter, BCCT family VC1279 [imported] - Vibrio cholerae (group O1 strain N16961) gb|AAF94438.1| (AE004207) transporter, BCCT family [Vibrio cholerae]

Ambiguous

LPHQPLATY

Octamer binding factor I 52-60

ProtHum:ref|NP_006226.1|
MATCHES:9/9 POS:52-60
POU domain, class 2, associating factor 1 [Homo sapiens]

Supports expression at the protein level

LPKVKLAL

EST 72-81

mRNAHum:gi|11038653|ref|NM_006988.2|
MATCHES:7/8 POS:1701-1724(-)
Homo sapiens a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 1 (ADAMTS1), mRNA
ChrHum:ref|NT_008343.3|Hs9_8500
MATCHES:8/8 POS:1053988-1054011(+)
Homo sapiens chromosome 9 working draft sequence segment
ChrHum:ref|NT_006281.3|Hs4_6438
MATCHES:7/8 POS:767527-767550(-)
Homo sapiens chromosome 4 working draft sequence segment
ChrHum:ref|NT_022719.3|Hs3_22875
MATCHES:7/8 POS:137223-137246(+)
Homo sapiens chromosome 3 working draft sequence segment
nr:gi|13385188|ref|NP_080003.1|
MATCHES:7/8 POS:226-233
RIKEN cDNA 4921517C11 gene [Mus musculus] dbj|BAB29614.1| (AK014906) putative [Mus musculus]
nr:gi|12839309|dbj|BAB24507.1|
MATCHES:7/8 POS:226-233
(AK006288) putative [Mus musculus]
nr:gi|4742003|gb|AAD28800.1|
MATCHES:7/8 POS:159-166
(AF146688) kelch protein [Takifugu rubripes]
ESTHum:gb|W72944.1|W72944
MATCHES:8/8 POS:494-517(+)
zd54g09.r1 Soares_fetal_heart_NbHH19W Homo sapiens cDNA clone IMAGE:344512 5'
ESTHum:gb|BG759963.1|BG759963
MATCHES:7/8 POS:494-517(+)
602733576F1 NIH_MGC_48 Homo sapiens cDNA clone IMAGE:4878786 5'
ESTHum:gb|BE707255.1|BE707255
MATCHES:7/8 POS:233-256(-)
PM1-HT0452-060700-008-d07 HT0452 Homo sapiens cDNA

Ambiguous

LQFPVGRI

Histone H2a Z 25-32

ProtHum:ref|NP_036544.1|
MATCHES:8/8 POS:26-33
purine-rich element binding protein B [Homo sapiens]
ProtHum:ref|NP_002097.1|
MATCHES:8/8 POS:26-33
H2A histone family, member Z; H2AZ histone [Homo sapiens]
ProtHum:ref|NP_060737.1|
MATCHES:7/8 POS:24-31
hypothetical protein FLJ10903 [Homo sapiens]

Supports expression at the protein level

LQFPVGRVHR

Histone H2a 23-32

ProtHum:ref|NP_002096.1|
MATCHES:10/10 POS:24-33
H2A histone family, member X; H2AX histone [Homo sapiens]
ProtHum:ref|NP_060737.1|
MATCHES:10/10 POS:24-33
hypothetical protein FLJ10903 [Homo sapiens]
ProtHum:ref|NP_066409.1|
MATCHES:10/10 POS:24-33
H2A histone family, member G [Homo sapiens]

Supports expression at the protein level

LRFQSSAVM

Histone H3 82-90

ProtHum:ref|NP_066298.1|
MATCHES:9/9 POS:83-91
H3 histone family, member I [Homo sapiens]
ProtHum:ref|NP_003528.1|
MATCHES:9/9 POS:83-91
H3 histone family, member L [Homo sapiens]
ProtHum:ref|NP_003527.1|
MATCHES:9/9 POS:83-91
H3 histone family, member K [Homo sapiens]

Supports expression at the protein level

LSSPVTKSF

Ig kappa light chain

mRNAHum:gi|8051634|ref|NM_003400.2|
MATCHES:8/9 POS:3020-3046(-)
Homo sapiens exportin 1 (CRM1, yeast, homolog) (XPO1), mRNA
ChrHum:ref|NT_022213.3|Hs2_22369
MATCHES:9/9 POS:266792-266818(-)
Homo sapiens chromosome 2 working draft sequence segment
ChrHum:ref|NT_007402.3|Hs6_7559
MATCHES:8/9 POS:256579-256602(+)
Homo sapiens chromosome 6 working draft sequence segment
ChrHum:ref|NT_007494.3|Hs6_7651
MATCHES:8/9 POS:859513-859539(-)
Homo sapiens chromosome 6 working draft sequence segment
nr:gi|386812|gb|AAA59000.1|
MATCHES:9/9 POS:124-132
(M11937) immunoglobulin kappa chain (V-J-C) [Homo sapiens]
nr:gi|106528|pir||S02577
MATCHES:9/9 POS:92-100
Ig kappa chain C region - human
nr:gi|12054082|emb|CAC20459.1|
MATCHES:9/9 POS:93-101
(AJ294735) immunoglobulin heavy chain constant region kappa [Homo sapiens]

Supports expression at the protein level

LTDPGVLDY

Unknown

ESTHum:gb|R62528.1|R62528
MATCHES:8/9 POS:261-287(+)
yi13f11.r1 Soares placenta Nb2HP Homo sapiens cDNA clone IMAGE:139149 5'
ESTHum:gb|BE896934.1|BE896934
MATCHES:8/9 POS:211-237(+)
601439460F1 NIH_MGC_72 Homo sapiens cDNA clone IMAGE:3924518 5'

LTDPSQRLV

Catenin B 370-378

ProtHum:ref|NP_001895.1|
MATCHES:9/9 POS:370-378
catenin (cadherin-associated protein), beta 1 (88kD) [Homo sapiens]

Supports expression at the protein level

LVMAPRTVL

HLA-B7 signal sequence 2-10

ProtHum:ref|NP_005505.1|
MATCHES:9/9 POS:2-10
major histocompatibility complex, class I, B [Homo sapiens]

Supports expression at the protein level

MIEPRTLQY

40S ribosomal protein S16 40-48

ProtHum:ref|NP_001011.1|
MATCHES:9/9 POS:41-49
ribosomal protein S16 [Homo sapiens]

Supports expression at the protein level

MLLSVPLLLG

Calcireticulin signal sequence 1-10

ProtHum:ref|NP_004334.1|
MATCHES:10/10 POS:1-10
calreticulin precursor; Sicca syndrome antigen A (autoantigen Ro; calreticulin); autoantigen Ro [Homo sapiens]

Supports expression at the protein level

MPWFKGWKV

Elongation factor 1 alpha

ProtHum:ref|NP_001393.1|
MATCHES:9/9 POS:208-216
eukaryotic translation elongation factor 1 alpha 1 [Homo sapiens]
ProtHum:ref|NP_001949.1|
MATCHES:9/9 POS:208-216
eukaryotic translation elongation factor 1 alpha 2 [Homo sapiens]

Supports expression at the protein level

MQPTHPIRL

HS1 160-168

ProtHum:ref|NP_036611.1|
MATCHES:9/9 POS:163-171
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide [Homo sapiens]
ProtHum:ref|NP_006817.1|
MATCHES:9/9 POS:160-168
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide; 14-3-3 protein tau [Homo sapiens]
ProtHum:ref|NP_003397.1|
MATCHES:9/9 POS:160-168
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide; Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation [Homo sapiens]

Supports expression at the protein level

MRPRKAFLL

ERP72 1-9

ProtHum:ref|NP_004902.1|
MATCHES:9/9 POS:1-9
protein disulfide isomerase related protein (calcium-binding protein, intestinal-related) [Homo sapiens]

Supports expression at the protein level

MTIEMRTTR

Unknown

ChrHum:ref|NT_008874.3|Hs10_9031
MATCHES:9/9 POS:642599-642625(+)
Homo sapiens chromosome 10 working draft sequence segment
nt:emb|AL133215.16|AL133215
MATCHES:9/9 POS:110407-110433(-)
Human DNA sequence from clone RP11-108L7 on chromosome 10. contains part of the gene for a novel Insulin-like growth factor binding type protein with Kazal-type serine protease inhibitor domain, the gene for a novel protein similar to rat tricarboxylat>
nt:gb|AE003549.2|AE003549
MATCHES:8/9 POS:133892-133918(-)
Drosophila melanogaster genomic scaffold 142000013386050 section 19 of 54, complete sequence

Putative new gene

MVDGTLLLL

HLA-E signal sequence 1-9

ProtHum:ref|NP_005507.1|
MATCHES:9/9 POS:1-9
major histocompatibility complex, class I, E [Homo sapiens]

Supports expression at the protein level

NAACMALNI

MOMP 99-107

nr:gi|8489823|gb|AAF75768.1|
MATCHES:9/9 POS:91-99
(AF265238) outer membrane protein MOMP [Chlamydia trachomatis]
nr:gi|8489821|gb|AAF75767.1|
MATCHES:9/9 POS:91-99
(AF265237) outer membrane protein MOMP [Chlamydia trachomatis]
nr:gi|11561794|gb|AAC31439.2|
MATCHES:9/9 POS:121-129
(AF063198) major outer membrane protein [Chlamydia trachomatis]

Human pathogen

NAPWAVTSL

Butyryl cholinesterase 256-264

ProtHum:ref|NP_000046.1|
MATCHES:9/9 POS:256-264
butyrylcholinesterase precursor [Homo sapiens]

Supports expression at the protein level

NCPERIITL

hnRNP X 53-61

ProtHum:ref|NP_005007.1|
MATCHES:9/9 POS:53-61
poly(rC)-binding protein 2; hnRNP-E2 [Homo sapiens]
ProtHum:ref|NP_006187.1|
MATCHES:9/9 POS:53-61
poly(rC)-binding protein 1; heterogenous nuclear ribonucleoprotein X; hnRNP-E1 [Homo sapiens]

Supports expression at the protein level

NEFPDIDIR

Unknown

N/A

NHAIVSTSV

26S protease (S4) regulatory Su 119-127

ProtHum:ref|NP_002793.1|
MATCHES:9/9 POS:119-127
proteasome (prosome, macropain) 26S subunit, ATPase, 1; Proteasome 26S subunit, ATPase, 1 [Homo sapiens]

Supports expression at the protein level

NHFEGHYQY

MAP kinase phosphatase-1 212-220

ProtHum:ref|NP_001385.1|
MATCHES:9/9 POS:234-242
dual specificity phosphatase 4; MAP kinase phosphatase 2; VH1 homologous phosphatase 2; protein tyrosine phosphatase; serine/threonine specific protein phosphatase [Homo sapiens]
ProtHum:ref|NP_004408.1|
MATCHES:9/9 POS:212-220
dual specificity phosphatase 1; serine/threonine specific protein phosphatase [Homo sapiens]

Supports expression at the protein level

NKADVILKY

Initiation factor eIF-4C 87-95

ProtHum:ref|NP_004672.1|
MATCHES:9/9 POS:87-95
eukaryotic translation initiation factor 1A, Y chromosome; eIF-1A Y isoform [Homo sapiens]
ProtHum:ref|NP_001403.1|
MATCHES:9/9 POS:87-95
eukaryotic translation initiation factor 1A; eukaryotic translation initiation factor 4C [Homo sapiens]

Supports expression at the protein level

NPNSPSITY

Enhancer of rudimentary homolog mRNA

ProtHum:ref|NP_004441.1|
MATCHES:9/9 POS:44-52
enhancer of rudimentary (Drosophila) homolog; Enhancer of rudimentary, Drosophila, homolog of [Homo sapiens]

Supports expression at the protein level

NQFQALLQY

Polypyrimidine tract-binding protein

ProtHum:ref|NP_002810.1|
MATCHES:9/9 POS:220-228
polypyrimidine tract binding protein (heterogeneous nuclear ribonucleoprotein I) [Homo sapiens]
ProtHum:ref|NP_067013.1|
MATCHES:9/9 POS:217-225
neural polypyrimidine tract binding protein [Homo sapiens]
ProtHum:ref|NP_005147.1|
MATCHES:9/9 POS:187-195
regulator of differentiation (in S. pombe) 1; fission yeast differentiation regulator; regulator of differentiation (in S. pombi) 1 [Homo sapiens]

Supports expression at the protein level

NRAVVGVVA

60S ribosomal protein L8 162-170

ProtHum:ref|NP_000964.1|
MATCHES:9/9 POS:162-170
ribosomal protein L8 [Homo sapiens]

Supports expression at the protein level

NRRFVNVVP

40S ribosomal protein S30 113-121

ProtHum:ref|NP_001988.1|
MATCHES:9/9 POS:113-121
Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 [Homo sapiens]

Supports expression at the protein level

NVIRDAVTY

Histone H4 66-73

ProtHum:ref|NP_068803.1|
MATCHES:9/9 POS:65-73
H4 histone family, member E [Homo sapiens]
ProtHum:ref|NP_003539.1|
MATCHES:9/9 POS:65-73
H4 histone, family 2 [Homo sapiens]
ProtHum:ref|NP_003537.1|
MATCHES:9/9 POS:65-73
H4 histone family, member K [Homo sapiens]

Supports expression at the protein level

NYGGGNYGSGSY

hnRNP A2 or B1 homolog (S11=N) 277-288

ProtHum:ref|NP_002128.1|
MATCHES:11/12 POS:277-288
heterogeneous nuclear ribonucleoprotein A2/B1 [Homo sapiens]

Supports expression at the protein level
Spans splice site
Putative SNP

PAAAAFDL

Unknown

mRNAHum:gi|13654236|ref|NM_006904.5|
MATCHES:7/8 POS:33-56(+)
Homo sapiens protein kinase, DNA-activated, catalytic polypeptide (PRKDC), mRNA
nt:gb|AC005444.1|AC005444
MATCHES:8/8 POS:44011-44034(-)
Drosophila melanogaster, chromosome 2R, region 36D3-36D3, P1 clone DS06379, complete sequence
nt:gb|AC007755.6|AC007755
MATCHES:8/8 POS:33341-33364(-)
Drosophila melanogaster, chromosome 3R, region 89A-89B, BAC clone BACR04C07, complete sequence
nt:ref|NC_002678.1|
MATCHES:8/8 POS:4640560-4640583(+)
Mesorhizobium loti, complete genome

PASKKTDPQK

RAGE-1, 2, 3 (Orf5) 44-53

ProtHum:ref|NP_055041.1|
MATCHES:10/10 POS:390-399
renal tumor antigen; renal cell carcinoma antigen (MOK protein kinase) [Homo sapiens]

Supports expression at the protein level
Spans splice site

PLDGEYFTL

p53 322-330

ProtHum:ref|NP_000537.2|
MATCHES:9/9 POS:322-330
tumor protein p53 [Homo sapiens]

Supports expression at the protein level

PVKQVVYHR

Unknown

N/A

QAIKGMHIR

60S ribosomal protein L17 34-42

ProtHum:ref|NP_000976.1|
MATCHES:9/9 POS:34-42
ribosomal protein L17 [Homo sapiens]

Supports expression at the protein level

QASQEVKNW

HIV-1 gag p24 308-316

nr:gi|555032|gb|AAA45091.1|
MATCHES:9/9 POS:308-316
(L11802) gag protein [Human immunodeficiency virus type 1]
nr:gi|554837|gb|AAA44313.1|
MATCHES:9/9 POS:310-318
(L11756) gag protein [Human immunodeficiency virus type 1]
nr:gi|14531113|gb|AAK66073.1|
MATCHES:9/9 POS:311-319
(AF281710) gag polyprotein [Human immunodeficiency virus type 1]

Human pathogen

QMVHQAISPRTL

HIV-1 gag p24 141-152

nr:gi|9651280|gb|AAF91122.1|AF196675_1
MATCHES:12/12 POS:122-133
(AF196675) gag protein [Human immunodeficiency virus type 1]
nr:gi|7543943|emb|CAB87176.1|
MATCHES:12/12 POS:4-15
(AJ286502) p24 [Human immunodeficiency virus type 1]
nr:gi|7532482|emb|CAB87015.1|
MATCHES:12/12 POS:5-16
(AJ286394) p24 [Human immunodeficiency virus type 1]

Human pathogen

QQLYWSHPR

40S ribosomal protein S29 3-11

ProtHum:ref|NP_001023.1|
MATCHES:9/9 POS:4-12
ribosomal protein S29 [Homo sapiens]

Supports expression at the protein level

QRKKAYADF

Cytochrome C oxidase subunit VI c 44-52

ProtHum:ref|NP_004365.1|
MATCHES:9/9 POS:44-52
cytochrome c oxidase subunit VIc [Homo sapiens]

Supports expression at the protein level

QSEDGSHTIQIMY

HLA class I 111-123

ProtHum:ref|NP_002107.1|
MATCHES:13/13 POS:111-123
major histocompatibility complex, class I, A [Homo sapiens]

Supports expression at the protein level
Spans splice site

QVCERIPTI

Vinculin 982-990

ProtHum:ref|NP_003364.1|
MATCHES:9/9 POS:983-991
vinculin isoform VCL [Homo sapiens]
ProtHum:ref|NP_054706.1|
MATCHES:9/9 POS:1051-1059
VCL isoform meta-VCL [Homo sapiens]

Supports expression at the protein level
Spans splice site

QYDEAVAQF

Histone binding protein 599-607

ProtHum:ref|NP_002473.1|
MATCHES:9/9 POS:599-607
nuclear autoantigenic sperm protein (histone-binding) [Homo sapiens]

Supports expression at the protein level

REIAQDFKTD

Histone H3

ProtHum:ref|NP_066298.1|
MATCHES:10/10 POS:73-82
H3 histone family, member I [Homo sapiens]
ProtHum:ref|NP_005315.1|
MATCHES:10/10 POS:73-82
H3 histone, family 3B (H3.3B) [Homo sapiens]
ProtHum:ref|NP_003528.1|
MATCHES:10/10 POS:73-82
H3 histone family, member L [Homo sapiens]

Supports expression at the protein level

REIIINAV

Ribonucl. reductase 290-297

ProtHum:ref|NP_001025.1|
MATCHES:8/8 POS:290-297
ribonucleotide reductase M2 polypeptide [Homo sapiens]

Supports expression at the protein level

REMIPFADI

Unknown

N/A

RERRDNYV

40S ribosomal protein S17 77-84

ProtHum:ref|NP_001012.1|
MATCHES:8/8 POS:78-85
ribosomal protein S17 [Homo sapiens]

Supports expression at the protein level

RGYRPRFRR

Y-box transcription factor 239-247

ProtHum:ref|XP_012361.2|
MATCHES:9/9 POS:235-243
similar to Y BOX BINDING PROTEIN-1 (Y-BOX TRANSCRIPTION FACTOR) (YB-1) (CCAAT-BINDING TRANSCRIPTION FACTOR I SUBUNIT A) (CBF-A) (ENHANCER FACTOR I SUBUNIT A) (EFI-A) (DNA-BINDING PROTEIN B) (DBPB) (M. musculus) [Homo sapiens]
ProtHum:ref|XP_017888.1|
MATCHES:9/9 POS:42-50
similar to Y BOX BINDING PROTEIN-1 (Y-BOX TRANSCRIPTION FACTOR) (YB-1) (CCAAT-BINDING TRANSCRIPTION FACTOR I SUBUNIT A) (CBF-A) (ENHANCER FACTOR I SUBUNIT A) (EFI-A) (DNA-BINDING PROTEIN B) (DBPB) (H. sapiens) [Homo sapiens]
ProtHum:ref|XP_010705.2|
MATCHES:9/9 POS:42-50
nuclease sensitive element binding protein 1 [Homo sapiens]

Supports expression at the protein level

RHPKYKTEL

Nuclear protein (TTP) 130-138

ProtHum:ref|NP_008818.1|
MATCHES:9/9 POS:188-196
butyrate response factor 2 (EGF-response factor 2) [Homo sapiens]
ProtHum:ref|NP_003398.1|
MATCHES:9/9 POS:138-146
zinc finger protein homologous to Zfp-36 in mouse; G0S24 [Homo sapiens]
ProtHum:ref|NP_004917.1|
MATCHES:9/9 POS:149-157
butyrate response factor 1 (EGF-response factor 1) [Homo sapiens]

Supports expression at the protein level

RIIPRHLQL

Histone H2a 77-85

ProtHum:ref|NP_066544.1|
MATCHES:9/9 POS:78-86
H2A histone family, member E [Homo sapiens]
ProtHum:ref|NP_066409.1|
MATCHES:9/9 POS:78-86
H2A histone family, member G [Homo sapiens]
ProtHum:ref|NP_066408.1|
MATCHES:9/9 POS:78-86
H2A histone family, member P [Homo sapiens]

Supports expression at the protein level

RILGAVAKV

Vinculin 822-830

ProtHum:ref|NP_003364.1|
MATCHES:9/9 POS:823-831
vinculin isoform VCL [Homo sapiens]
ProtHum:ref|NP_054706.1|
MATCHES:9/9 POS:823-831
VCL isoform meta-VCL [Homo sapiens]

Supports expression at the protein level

RISGVDRYY

NADH-ubiquinone oxidoreductase MWFE SU

ProtHum:ref|NP_004532.1|
MATCHES:9/9 POS:53-61
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1 (7.5kD, MWFE); NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1 (7.5kD) [Homo sapiens]

Supports expression at the protein level

RKGGNNKLIK

Phosphatidylinositol-3-kinase 373-382

ProtHum:ref|NP_005018.1|
MATCHES:10/10 POS:370-379
phosphoinositide-3-kinase, regulatory subunit, polypeptide 2 (p85 beta); phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 2 (p85 beta) [Homo sapiens]
ProtHum:ref|NP_003620.1|
MATCHES:10/10 POS:105-114
phosphoinositide-3-kinase, regulatory subunit, polypeptide 3 (p55, gamma); phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 3 (p55, gamma) [Homo sapiens]

Supports expression at the protein level

RKSPSCAC

Polyubiquitin, R. norvegicus 8-15

mRNAHum:gi|5921580|ref|NM_006736.1|
MATCHES:7/8 POS:198-221(-)
Homo sapiens heat shock protein, neuronal DNAJ-like 1 (HSJ1), mRNA
mRNAHum:gi|4757807|ref|NM_001683.1|
MATCHES:7/8 POS:1571-1594(-)
Homo sapiens ATPase, Ca++ transporting, plasma membrane 2 (ATP2B2), mRNA
nr:gi|1050928|emb|CAA63348.1|
MATCHES:8/8 POS:8-15
(X92660) polyubiquitin [Rattus norvegicus]
nr:gi|8394502|ref|NP_059010.1|
MATCHES:8/8 POS:800-807
ubiquitin C [Rattus norvegicus] pir||S45359 polyubiquitin 10 - rat dbj|BAA04129.1| (D17296) polyubiquitin [Rattus norvegicus]

Ambiguous

RLAHEVGWKY

60S ribosomal protein L13A 139-148

ProtHum:ref|NP_036555.1|
MATCHES:10/10 POS:140-149
ribosomal protein L13a [Homo sapiens]

Supports expression at the protein level

RLPDGRVVL

Interferon binding protein 339-347

ProtHum:ref|NP_002154.1|
MATCHES:9/9 POS:340-348
interferon consensus sequence binding protein 1; H-ICSBP [Homo sapiens]

Supports expression at the protein level

RLPKDFRIL

Unknown

ChrHum:ref|NT_005176.3|Hs2_5333
MATCHES:8/9 POS:1089616-1089639(+)
Homo sapiens chromosome 2 working draft sequence segment
ChrHum:ref|NT_008513.3|Hs9_8670
MATCHES:8/9 POS:1814499-1814522(-)
Homo sapiens chromosome 9 working draft sequence segment
ChrHum:ref|NT_011517.2|Hs22_11674
MATCHES:8/9 POS:152812-152835(+)
Homo sapiens chromosome 22 working draft sequence segment
nt:emb|AL445064.1|TACID2
MATCHES:8/9 POS:40466-40492(+)
Thermoplasma acidophilum complete genome; segment 2/5
nt:gb|AC017088.8|AC017088
MATCHES:8/9 POS:189144-189167(-)
Homo sapiens clone RP11-496P1, complete sequence
nt:dbj|AP000538.1|AP000538
MATCHES:8/9 POS:613-636(-)
Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region, clone:c65B12

RLPKDFVDL

D123 protein 305-313

ProtHum:ref|NP_006014.1|
MATCHES:9/9 POS:305-313
D123 gene product [Homo sapiens]

Supports expression at the protein level

RPKSNIVLL

CD20 222-230

ProtHum:ref|NP_068769.1|
MATCHES:9/9 POS:222-230
membrane-spanning 4-domains, subfamily A, member 2 (Fc fragment of IgE, high affinity I, receptor for; beta polypeptide); CD20 antigen [Homo sapiens]

Supports expression at the protein level
Spans splice site

RPLTDFDQGW

HCV-1 NS1 77-85

nr:gi|540851|pir||A44150
MATCHES:10/10 POS:460-469
structural protein - hepatitis C virus
nr:gi|14290042|gb|AAK59221.1|
MATCHES:10/10 POS:139-148
(AF381138) polyprotein [Hepatitis C virus]
nr:gi|14290040|gb|AAK59220.1|
MATCHES:10/10 POS:139-148
(AF381137) polyprotein [Hepatitis C virus]

Human pathogen

RPRHQGVMV

alpha actin 39-47

ProtHum:ref|NP_001092.1|
MATCHES:9/9 POS:37-45
beta actin; beta cytoskeletal actin [Homo sapiens]
ProtHum:ref|NP_001605.1|
MATCHES:9/9 POS:37-45
actin, gamma 1 propeptide; cytoskeletal gamma-actin; actin, cytoplasmic 2 [Homo sapiens]
ProtHum:ref|NP_005150.1|
MATCHES:9/9 POS:39-47
actin, alpha, cardiac muscle precursor [Homo sapiens]

Supports expression at the protein level

RPSGPGPEL

Transcription activator SNF2L2 257-265

ProtHum:ref|NP_003061.1|
MATCHES:9/9 POS:261-269
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2; SWI/SNF related, matrix associated, actin dependent regulator of; SNF2 (sucrose nonfermenting, yeast, homolog)-like 2; Sth1p; hSNF2a [Homo sapiens]

Supports expression at the protein level
Spans splice site

RRFFPYYV

Proteasome Su C5 127-134

ProtHum:ref|NP_002784.1|
MATCHES:8/8 POS:127-134
proteasome (prosome, macropain) subunit, beta type, 1 [Homo sapiens]

Supports expression at the protein level

RRFFPYYVY

Proteasome Su C5 127-135

ProtHum:ref|NP_002784.1|
MATCHES:9/9 POS:127-135
proteasome (prosome, macropain) subunit, beta type, 1 [Homo sapiens]

Supports expression at the protein level

RRFGDKLNF

Immediate early response gene 30-38

ProtHum:ref|NP_066950.1|
MATCHES:9/9 POS:30-38
phorbol-12-myristate-13-acetate-induced protein 1; adult T cell leukemia-derived PMA-responsive [Homo sapiens]

Supports expression at the protein level

RRFMQYYVY

Unknown

N/A

RRFTRPEH

Unknown

ChrHum:ref|NT_011611.3|HsX_11768
MATCHES:8/8 POS:801779-801802(+)
Homo sapiens chromosome X working draft sequence segment
ChrHum:ref|NT_016968.3|Hs6_17124
MATCHES:7/8 POS:242329-242352(-)
Homo sapiens chromosome 6 working draft sequence segment
ChrHum:ref|NT_010676.3|Hs17_10833
MATCHES:7/8 POS:31873-31893(-)
Homo sapiens chromosome 17 working draft sequence segment
nr:gi|5689463|dbj|BAA83015.1|
MATCHES:8/8 POS:435-442
(AB028986) KIAA1063 protein [Homo sapiens]
nr:gi|13938160|gb|AAH07196.1|AAH07196
MATCHES:8/8 POS:15-22
(BC007196) Similar to non-stop [Homo sapiens]
nr:gi|14495683|gb|AAH09452.1|AAH09452
MATCHES:8/8 POS:71-78
(BC009452) Similar to non-stop [Homo sapiens]

Supports expression at the protein level

RRFVNVVPTF

40S ribosomal protein S30 40-49

ProtHum:ref|NP_001988.1|
MATCHES:10/10 POS:114-123
Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 [Homo sapiens]

Supports expression at the protein level

RRFVNVVPTFGK

40S ribosomal protein S30 40-51

ProtHum:ref|NP_001988.1|
MATCHES:12/12 POS:114-125
Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 [Homo sapiens]

Supports expression at the protein level

RRHWGGNVL

60S ribosomal protein L7A 233-241

ProtHum:ref|NP_000963.1|
MATCHES:9/9 POS:234-242
ribosomal protein L7a; Ribosomal protein L7a (surfeit-3) [Homo sapiens]

Supports expression at the protein level

RRIKEIVKK

HSP86 200-208

ProtHum:ref|NP_005339.1|
MATCHES:9/9 POS:201-209
heat shock 90kD protein 1, alpha [Homo sapiens]

Supports expression at the protein level

RRIKEIVKKH

HSP86 200-209

ProtHum:ref|NP_005339.1|
MATCHES:10/10 POS:201-210
heat shock 90kD protein 1, alpha [Homo sapiens]

Supports expression at the protein level

RRISGVDRY

EST

ProtHum:ref|NP_004532.1|
MATCHES:9/9 POS:52-60
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1 (7.5kD, MWFE); NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1 (7.5kD) [Homo sapiens]

Supports expression at the protein level

RRISGVDRYY

EST

ProtHum:ref|NP_004532.1|
MATCHES:10/10 POS:52-61
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1 (7.5kD, MWFE); NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1 (7.5kD) [Homo sapiens]

Supports expression at the protein level

RRLPIFSRL

TISB protein 325-333

ProtHum:ref|NP_008818.1|
MATCHES:9/9 POS:479-487
butyrate response factor 2 (EGF-response factor 2) [Homo sapiens]
ProtHum:ref|NP_004917.1|
MATCHES:9/9 POS:325-333
butyrate response factor 1 (EGF-response factor 1) [Homo sapiens]

Supports expression at the protein level

RRLRNHMAV

Cytochrome C oxidase subunit VI c 17-25

ProtHum:ref|NP_004365.1|
MATCHES:9/9 POS:17-25
cytochrome c oxidase subunit VIc [Homo sapiens]

Supports expression at the protein level

RRMGPPVGGHR

Ribonucleoprotein L 312-322

ProtHum:ref|NP_001524.1|
MATCHES:11/11 POS:312-322
heterogeneous nuclear ribonucleoprotein L [Homo sapiens]

Supports expression at the protein level

RRSKEITVR

RNA helicase p72 77-85

ProtHum:ref|NP_004387.1|
MATCHES:9/9 POS:77-85
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5; DEAD/H box-5; RNA helicase p68; p68 nuclear antigen; RNA-dependent ATPase [Homo sapiens]
ProtHum:ref|NP_006377.1|
MATCHES:8/9 POS:74-82
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 17 (72kD) [Homo sapiens]

Supports expression at the protein level

RRVEKHWRL

Initiation factor 2 gamma 444-452

ProtHum:ref|NP_001406.1|
MATCHES:9/9 POS:445-453
eukaryotic translation initiation factor 2, subunit 3 (gamma, 52kD); eukaryotic translation initiation factor 2G [Homo sapiens]

Supports expression at the protein level

RRVGEQVNL

Skeletal muscle C-protein (chicken)

ProtHum:ref|NP_002456.1|
MATCHES:8/9 POS:833-841
myosin-binding protein C, slow-type; skeletal muscle C-protein [Homo sapiens]
nr:gi|1706106|sp|P16419|MYPF_CHICK
MATCHES:9/9 POS:844-852
MYOSIN-BINDING PROTEIN C, FAST-TYPE (FAST MYBP-C) (C-PROTEIN, SKELETAL MUSCLE FAST-ISOFORM) pir||A35089 myosin-binding protein C - chicken gb|AAC59644.1| (U00922) myosin binding protein C [Gallus gallus]
nr:gi|212659|gb|AAA49068.1|
MATCHES:9/9 POS:704-712
(M31209) skeletal muscle C-protein [Gallus gallus]
nr:gi|7489611|pir||T03204
MATCHES:8/9 POS:418-426
hypothetical protein 483 - rice mitochondrion dbj|BAA06825.1| (D32052) ORF483 [Oryza sativa]

Ambiguous

RRVKEVVKK

HSP90 beta 195-203

ProtHum:ref|NP_031381.1|
MATCHES:9/9 POS:196-204
heat shock 90kD protein 1, beta; Heat-shock 90kD protein-1, beta [Homo sapiens]

Supports expression at the protein level

RRVLVQVSY

Met Adenosyltransferase 312-320

ProtHum:ref|NP_005902.1|
MATCHES:9/9 POS:312-320
methionine adenosyltransferase II, alpha [Homo sapiens]
ProtHum:ref|NP_000420.1|
MATCHES:9/9 POS:312-320
methionine adenosyltransferase I, alpha [Homo sapiens]

Supports expression at the protein level
Spans splice site

RRWLPAGDA

Elongation factor 2 341-349

ProtHum:ref|NP_001952.1|
MATCHES:9/9 POS:341-349
eukaryotic translation elongation factor 2 [Homo sapiens]

Supports expression at the protein level

RRYDRKQSGY

60S ribosomal protein L44 38-47

ProtHum:ref|NP_066357.1|
MATCHES:10/10 POS:39-48
ribosomal protein L44 [Homo sapiens]
ProtHum:ref|NP_000992.1|
MATCHES:10/10 POS:39-48
ribosomal protein L36a [Homo sapiens]

Supports expression at the protein level

RRYLENGKETL

HLA-B27 169-179

ProtHum:ref|NP_002108.1|
MATCHES:11/11 POS:193-203
major histocompatibility complex, class I, C [Homo sapiens]
ProtHum:ref|NP_002107.1|
MATCHES:11/11 POS:193-203
major histocompatibility complex, class I, A [Homo sapiens]
ProtHum:ref|NP_061823.1|
MATCHES:11/11 POS:190-200
major histocompatibility complex, class I, F [Homo sapiens]

Supports expression at the protein level

RRYQKSTEL

Histone H3.3 52-60

ProtHum:ref|NP_066298.1|
MATCHES:9/9 POS:53-61
H3 histone family, member I [Homo sapiens]
ProtHum:ref|NP_005315.1|
MATCHES:9/9 POS:53-61
H3 histone, family 3B (H3.3B) [Homo sapiens]
ProtHum:ref|NP_003528.1|
MATCHES:9/9 POS:53-61
H3 histone family, member L [Homo sapiens]

Supports expression at the protein level

RSLDDALKL

Dihydrofolate reductase 91-99

ProtHum:ref|NP_000782.1|
MATCHES:9/9 POS:92-100
dihydrofolate reductase [Homo sapiens]

Supports expression at the protein level

RTDGKVFQF

60S ribosomal protein L30 23-31

ProtHum:ref|NP_000977.1|
MATCHES:9/9 POS:23-31
ribosomal protein L24 [Homo sapiens]

Supports expression at the protein level

RTQNVLGEK

40S ribosomal protein S3 54-62

ProtHum:ref|NP_000996.1|
MATCHES:9/9 POS:54-62
ribosomal protein S3 [Homo sapiens]

Supports expression at the protein level

RVEQAVESMVK

Unknown

N/A

RVLPPNWKY

40S ribosomal protein S13 132-140

ProtHum:ref|NP_001008.1|
MATCHES:9/9 POS:133-141
ribosomal protein S13 [Homo sapiens]

Supports expression at the protein level

RVMAPRALL

HLA-Cw7 signal sequence 2-10

ProtHum:ref|NP_002108.1|
MATCHES:9/9 POS:2-10
major histocompatibility complex, class I, C [Homo sapiens]

Supports expression at the protein level
Found in the ucsc human draft: 6(-)

RVYIGRLSY

Splicing factor srp75 3-11

ProtHum:ref|NP_006266.1|
MATCHES:9/9 POS:3-11
splicing factor, arginine/serine-rich 6 [Homo sapiens]
ProtHum:ref|NP_005617.1|
MATCHES:9/9 POS:3-11
splicing factor, arginine/serine-rich 4 [Homo sapiens]

Supports expression at the protein level

RYMDAWNTVSR

Lamin B2/ppv1 gene

ProtHum:ref|NP_036590.1|
MATCHES:11/11 POS:72-82
translocase of inner mitochondrial membrane 13 (yeast) homolog B [Homo sapiens]
ProtHum:ref|NP_036589.1|
MATCHES:11/11 POS:72-82
translocase of inner mitochondrial membrane 13 (yeast) homolog A [Homo sapiens]

Supports expression at the protein level

RYRPGTVAL

Histone H3 40-48

ProtHum:ref|NP_066298.1|
MATCHES:9/9 POS:41-49
H3 histone family, member I [Homo sapiens]
ProtHum:ref|NP_005315.1|
MATCHES:9/9 POS:41-49
H3 histone, family 3B (H3.3B) [Homo sapiens]
ProtHum:ref|NP_003528.1|
MATCHES:9/9 POS:41-49
H3 histone family, member L [Homo sapiens]

Supports expression at the protein level

SEAIHTFQY

Unknown

ESTHum:gb|BG536422.1|BG536422
MATCHES:8/9 POS:775-801(-)
602564520F1 NIH_MGC_77 Homo sapiens cDNA clone IMAGE:4689076 5'

SEIDLILGY

Unknown

ChrHum:ref|NT_011896.4|HsY_12053
MATCHES:8/9 POS:2285063-2285089(+)
Homo sapiens chromosome Y working draft sequence segment
ChrHum:ref|NT_025306.3|HsX_25462
MATCHES:8/9 POS:1097483-1097509(+)
Homo sapiens chromosome X working draft sequence segment
nt:gb|AC010140.3|AC010140
MATCHES:8/9 POS:69681-69707(-)
Homo sapiens BAC clone RP11-218E11 from Y, complete sequence
nt:emb|AL158053.14|AL158053
MATCHES:8/9 POS:50110-50136(-)
Human DNA sequence from clone RP11-156J23 on chromosome Xq21.2-21.33, complete sequence [Homo sapiens]

SEIDTVAKY

Unknown

nr:gi|6323330|ref|NP_013402.1|
MATCHES:8/9 POS:314-322
gamma-glutamyltransferase homolog; Ecm38p [Saccharomyces cerevisiae] pir||S50383 gamma-glutamyltransferase homolog YLR299w - yeast (Saccharomyces cerevisiae) gb|AAB67344.1| (U17243) Similar to Gamma-Glutamyltransferase (GGT_HUMAN), involved in glutathione synthesis [Saccharomyces cerevisiae]
nr:gi|642915|gb|AAA99443.1|
MATCHES:8/9 POS:62-70
(L38457) trans-sialidase [Trypanosoma cruzi]
nr:gi|642913|gb|AAA99442.1|
MATCHES:8/9 POS:62-70
(L38456) trans-sialidase [Trypanosoma cruzi]

SESPIVVVL

Signal peptidase (rat) 45-54

ProtHum:ref|NP_055115.1|
MATCHES:9/9 POS:45-53
signal peptidase complex (18kD) [Homo sapiens]

Supports expression at the protein level

SFNCGGEFF

HIV-1 gp120 380-384

nr:gi|6469543|gb|AAF13329.1|
MATCHES:9/9 POS:362-370
(AF112551) envelope glycoprotein [Human immunodeficiency virus type 1]
nr:gi|11124715|emb|CAC15045.1|
MATCHES:9/9 POS:381-389
(AJ401037) envelope protein [Human immunodeficiency virus type 1]
nr:gi|8218033|emb|CAB92793.1|
MATCHES:9/9 POS:368-376
(AJ271445) ENV (gp160) [Human immunodeficiency virus type 1]

Human pathogen

SGVITLNTN

Unknown

ProtHum:ref|NP_000375.1|
MATCHES:8/9 POS:3345-3353
apolipoprotein B precursor; apoB-100; apoB-48 [Homo sapiens]

SHANSAVVL

beta adaptin 249-257

ProtHum:ref|NP_001118.1|
MATCHES:9/9 POS:249-257
adaptor-related protein complex 1, beta 1 subunit; Adaptin, beta (meningioma candidate); adaptin, beta 1 (beta prime); clathrin-associated/assembly/adaptor protein, large, beta 2 [Homo sapiens]
ProtHum:ref|NP_001273.1|
MATCHES:9/9 POS:249-257
adaptor-related protein complex 2, beta 1 subunit; adaptin, beta 2 (beta); clathrin-associated/assembly/adaptor protein, large, beta 1 [Homo sapiens]

Supports expression at the protein level

SHIGDAVV

Cyclin 152-159

ProtHum:ref|NP_002583.1|
MATCHES:8/8 POS:152-159
proliferating cell nuclear antigen [Homo sapiens]

Supports expression at the protein level

SHIGDAVVI

Cyclin 152-160

ProtHum:ref|NP_002583.1|
MATCHES:9/9 POS:152-160
proliferating cell nuclear antigen [Homo sapiens]

Supports expression at the protein level

SHIPQSSSY

Immunoglobulin transcription factor 2

ProtHum:ref|NP_003190.1|
MATCHES:9/9 POS:246-254
transcription factor 4, isoform b; Transcription factor-4 (immunoglobulin transcription factor-2) [Homo sapiens]

Supports expression at the protein level

SIRDGVRAY

Quinone reductase-like 1 gene (CRYZL1)

ProtHum:ref|NP_005102.1|
MATCHES:9/9 POS:125-133
crystallin, zeta (quinone reductase)-like 1; quinone reductase-like 1; human quinone oxidoreductase homolog-1 [Homo sapiens]

Supports expression at the protein level

SLAGGIIGV

hnRNP K 154-162

ProtHum:ref|NP_002131.1|
MATCHES:9/9 POS:154-162
heterogeneous nuclear ribonucleoprotein K [Homo sapiens]

Supports expression at the protein level

SLEPQRTQY

Unknown

ChrHum:ref|NT_010808.3|Hs17_10965
MATCHES:8/9 POS:1156222-1156245(-)
Homo sapiens chromosome 17 working draft sequence segment
ChrHum:ref|NT_019583.3|Hs14_19739
MATCHES:8/9 POS:1422893-1422916(-)
Homo sapiens chromosome 14 working draft sequence segment
nr:gi|1621277|emb|CAB02654.1|
MATCHES:8/9 POS:90-98
(Z81013) beta-1,4-endoxylanase [Thermobifida alba]

SLFKQVVTK

Unknown

ChrHum:ref|NT_009850.3|Hs13_10007
MATCHES:8/9 POS:1589338-1589364(-)
Homo sapiens chromosome 13 working draft sequence segment
ChrHum:ref|NT_025899.2|Hs16_26055
MATCHES:8/9 POS:292134-292157(-)
Homo sapiens chromosome 16 working draft sequence segment
ChrHum:ref|NT_025899.2|Hs16_26055
MATCHES:8/9 POS:81530-81553(-)
Homo sapiens chromosome 16 working draft sequence segment
nt:emb|AL359266.14|AL359266
MATCHES:8/9 POS:41513-41539(+)
Human DNA sequence from clone RP11-26P21 on chromosome 13, complete sequence [Homo sapiens]

SLFVSNHAY

Fructose-biphosphate aldolase 355-363

ProtHum:ref|NP_000025.1|
MATCHES:9/9 POS:356-364
aldolase A; fructose-bisphosphate aldolase; Aldolase A, fructose-bisphosphatase [Homo sapiens]

Supports expression at the protein level

SLLGLLVEV

Unknown

ChrHum:ref|NT_011793.3|HsX_11950
MATCHES:8/9 POS:1290014-1290040(-)
Homo sapiens chromosome X working draft sequence segment
ChrHum:ref|NT_007918.3|Hs7_8075
MATCHES:8/9 POS:412535-412561(+)
Homo sapiens chromosome 7 working draft sequence segment
ChrHum:ref|NT_004737.3|Hs1_4894
MATCHES:8/9 POS:143592-143618(+)
Homo sapiens chromosome 1 working draft sequence segment
nr:gi|11359721|pir||T46714
MATCHES:8/9 POS:458-465
probable crooked neck protein [imported] - Leishmania major emb|CAB58379.1| (AL121861) possible crooked neck protein [Leishmania major]
nr:gi|2145769|pir||S72902
MATCHES:8/9 POS:165-173
hypothetical protein B2168_C2_237 - Mycobacterium leprae gb|AAA17238.1| (U00018) B2168_C2_237 [Mycobacterium leprae]
nr:gi|13093989|emb|CAC31926.1|
MATCHES:8/9 POS:180-188
(AL583925) conserved membrane protein. [Mycobacterium leprae]

SLLPAIVEL

Protein phosphatase 2A 402-410

ProtHum:ref|NP_002707.1|
MATCHES:9/9 POS:415-423
protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform; Protein phosphatase 2, structural/regulatory subunit A, beta [Homo sapiens]
ProtHum:ref|NP_055040.1|
MATCHES:9/9 POS:403-411
protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform [Homo sapiens]

Supports expression at the protein level

SLPDFGISYV

EST (mouse)

ChrHum:ref|NT_025842.2|Hs11_25998
MATCHES:10/10 POS:734-763(+)
Homo sapiens chromosome 11 working draft sequence segment
ChrHum:ref|NT_008774.3|Hs10_8931
MATCHES:9/10 POS:89076-89105(+)
Homo sapiens chromosome 10 working draft sequence segment
nr:gi|13899323|ref|NP_113659.1|
MATCHES:10/10 POS:118-127
hypothetical protein MGC10966 [Homo sapiens] gb|AAH04347.1|AAH04347 (BC004347) Similar to hypothetical protein FLJ20116 [Homo sapiens]

Supports expression of a protein that is documented as hypothetical

SLSTFQQMW

beta actin 347-355

ProtHum:ref|NP_005150.1|
MATCHES:9/9 POS:350-358
actin, alpha, cardiac muscle precursor [Homo sapiens]
ProtHum:ref|NP_001604.1|
MATCHES:9/9 POS:350-358
alpha 2 actin; alpha-cardiac actin [Homo sapiens]
ProtHum:ref|NP_001091.1|
MATCHES:9/9 POS:350-358
alpha 1 actin precursor; alpha skeletal muscle actin [Homo sapiens]

Supports expression at the protein level

SLYASSPGGVY

Vimentin 50-60

ProtHum:ref|NP_003371.1|
MATCHES:11/11 POS:51-61
vimentin [Homo sapiens]

Supports expression at the protein level

SPKEKILY

Unknown

ChrHum:ref|NT_010140.3|Hs14_10297
MATCHES:8/8 POS:8689563-8689586(-)
Homo sapiens chromosome 14 working draft sequence segment
ChrHum:ref|NT_005795.3|Hs3_5952
MATCHES:7/8 POS:957864-957887(+)
Homo sapiens chromosome 3 working draft sequence segment
ChrHum:ref|NT_011669.3|HsX_11826
MATCHES:7/8 POS:83556-83579(+)
Homo sapiens chromosome X working draft sequence segment
nr:gi|14523167|gb|AAK64761.1|
MATCHES:7/8 POS:184-191
(AE007204) putative gluconolactonase precursor [Sinorhizobium meliloti]
nr:gi|14029842|gb|AAK52835.1|AF367845_1
MATCHES:7/8 POS:15-22
(AF367845) cytoplasmic polyadenylation element-binding protein isoform 2 [Aplysia californica]
nr:gi|14029840|gb|AAK52834.1|AF367844_1
MATCHES:7/8 POS:261-268
(AF367844) cytoplasmic polyadenylation element-binding protein isoform 1 [Aplysia californica]

SPKEKYEL

Unknown

ProtHum:ref|NP_004406.1|
MATCHES:7/8 POS:2024-2031
desmoplakin (DPI, DPII); Desmoplakin [Homo sapiens]
ProtHum:ref|NP_055443.1|
MATCHES:7/8 POS:160-167
gene predicted from cDNA with a complete coding sequence [Homo sapiens]

SPKLKYMQ

Unknown

ChrHum:ref|NT_006617.3|Hs5_6774
MATCHES:7/8 POS:1146724-1146747(-)
Homo sapiens chromosome 5 working draft sequence segment
ChrHum:ref|NT_010148.3|Hs14_10305
MATCHES:7/8 POS:2817508-2817528(-)
Homo sapiens chromosome 14 working draft sequence segment
ChrHum:ref|NT_007513.3|Hs6_7670
MATCHES:7/8 POS:451222-451242(+)
Homo sapiens chromosome 6 working draft sequence segment
nr:gi|13357917|ref|NP_078191.1|
MATCHES:7/8 POS:242-249
citrate-dependent iron transport, membrane-bound protein [Ureaplasma urealyticum] pir||E82902 citrate-dependent iron transport, membrane-bound protein UU357 [imported] - Ureaplasma urealyticum gb|AAF30766.1|AE002132_10 (AE002132) citrate-dependent iron transport, membrane-bound protein [Ureaplasma urealyticum]

SPRYIFTML

Topoisomerase II 801-809

ProtHum:ref|NP_001059.1|
MATCHES:9/9 POS:818-826
topoisomerase (DNA) II beta (180kD) [Homo sapiens]
ProtHum:ref|NP_001058.1|
MATCHES:9/9 POS:802-810
topoisomerase (DNA) II alpha (170kD) [Homo sapiens]

Supports expression at the protein level

SPSVDKARAEL

miHAg H-Y (human SMCY) 1041-1051

ProtHum:ref|NP_004644.1|
MATCHES:11/11 POS:950-960
SMC (mouse) homolog, Y chromosome; Selected mouse cDNA on Y, human homolog of; histocompatibility Y antigen [Homo sapiens]

Supports expression at the protein level

SQFGGGSQY

eIF3-p66 61-69

ProtHum:ref|NP_003744.1|
MATCHES:9/9 POS:61-69
eukaryotic translation initiation factor 3, subunit 7 (zeta, 66/67kD) [Homo sapiens]

Supports expression at the protein level

SRDKTIIM

GLBP 35-42

ProtHum:ref|NP_006089.1|
MATCHES:8/8 POS:35-42
guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1; protein homologous to chicken B complex protein, guanine nucleotide binding [Homo sapiens]
ProtHum:ref|NP_000421.1|
MATCHES:7/8 POS:211-218
platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit (45kD); lissencephaly 1 protein; Platelet-activating factor acetylhydrolase, isoform 1B, alpha subunit [Homo sapiens]
ProtHum:ref|NP_000421.1|
MATCHES:7/8 POS:315-322
platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit (45kD); lissencephaly 1 protein; Platelet-activating factor acetylhydrolase, isoform 1B, alpha subunit [Homo sapiens]

Supports expression at the protein level
Spans splice site

SRDKTIIMW

Guanine nucleotide binding protein 36-44

ProtHum:ref|NP_006089.1|
MATCHES:9/9 POS:35-43
guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1; protein homologous to chicken B complex protein, guanine nucleotide binding [Homo sapiens]
ProtHum:ref|NP_000421.1|
MATCHES:8/9 POS:211-219
platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit (45kD); lissencephaly 1 protein; Platelet-activating factor acetylhydrolase, isoform 1B, alpha subunit [Homo sapiens]
ProtHum:ref|NP_000421.1|
MATCHES:8/9 POS:315-323
platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit (45kD); lissencephaly 1 protein; Platelet-activating factor acetylhydrolase, isoform 1B, alpha subunit [Homo sapiens]

Supports expression at the protein level
Spans splice site

SRFPEALRL

26S proteasome regulatory SU S2 260-268

ProtHum:ref|NP_002799.1|
MATCHES:9/9 POS:203-211
proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 [Homo sapiens]

Supports expression at the protein level

SSEQTFMYY

Ornithin decarboxylase 309-317

ProtHum:ref|NP_002530.1|
MATCHES:9/9 POS:309-317
ornithine decarboxylase 1 [Homo sapiens]

Supports expression at the protein level

SSYTTTTTI

Stearoyl-CoA desaturase 12-20

ProtHum:ref|NP_005054.1|
MATCHES:9/9 POS:12-20
stearoyl-CoA desaturase (delta-9-desaturase) [Homo sapiens]

Supports expression at the protein level

STAPPAHGV

MUC1 (VNTR) 130-138

ProtHum:ref|NP_002447.1|
MATCHES:9/9 POS:130-138
mucin 1, transmembrane [Homo sapiens]
ProtHum:ref|NP_002447.1|
MATCHES:9/9 POS:150-158
mucin 1, transmembrane [Homo sapiens]
ProtHum:ref|NP_002447.1|
MATCHES:9/9 POS:190-198
mucin 1, transmembrane [Homo sapiens]

Supports expression at the protein level

STDHIPILY

Hexosephosphate aminotransferase 217-225

ProtHum:ref|NP_002047.1|
MATCHES:9/9 POS:218-226
glucosamine-fructose-6-phosphate aminotransferase [Homo sapiens]

Supports expression at the protein level

STEPPMLNY

Unknown

N/A

STEPVNILY

Unknown

ChrHum:ref|NT_009534.3|Hs12_9691
MATCHES:8/9 POS:1060729-1060755(-)
Homo sapiens chromosome 12 working draft sequence segment
ChrHum:ref|NT_024384.3|Hs12_24540
MATCHES:8/9 POS:248120-248143(-)
Homo sapiens chromosome 12 working draft sequence segment
ChrHum:ref|NT_025306.3|HsX_25462
MATCHES:8/9 POS:1629887-1629913(-)
Homo sapiens chromosome X working draft sequence segment
nt:gb|AC025160.29|AC025160
MATCHES:8/9 POS:20119-20145(+)
Homo sapiens 12 BAC RP11-526P6 (Roswell Park Cancer Institute Human BAC Library) complete sequence
nt:gb|AE000752.1|AE000752
MATCHES:8/9 POS:3505-3531(+)
Aquifex aeolicus section 84 of 109 of the complete genome
nt:emb|Z94722.1|HS60G11
MATCHES:8/9 POS:898-924(-)
Human DNA sequence from PAC 60G11 on chromosome X; contains STS

STLHLVLRL

Ubiquitin 65-73

ProtHum:ref|NP_061828.1|
MATCHES:9/9 POS:65-73
ubiquitin B [Homo sapiens]
ProtHum:ref|NP_061828.1|
MATCHES:9/9 POS:141-149
ubiquitin B [Homo sapiens]
ProtHum:ref|NP_061828.1|
MATCHES:9/9 POS:217-225
ubiquitin B [Homo sapiens]

Supports expression at the protein level

STLHLVRL

Ubiquitin 65-73

mRNAHum:gi|4759307|ref|NM_004624.1|
MATCHES:7/8 POS:1223-1246(+)
Homo sapiens vasoactive intestinal peptide receptor 1 (VIPR1), mRNA
nt:gb|AC025098.4|AC025098
MATCHES:8/8 POS:14290-14313(+)
Oryza sativa chromosome 10 clone OSJNBa0020E23, complete sequence
nt:gb|AC073166.7|AC073166
MATCHES:8/8 POS:107080-107103(-)
Oryza sativa chromosome 10 BAC OSJNBb0064P21 genomic sequence, complete sequence
nt:gb|AE002743.2|AE002743
MATCHES:8/8 POS:50808-50831(+)
Drosophila melanogaster genomic scaffold 142000013385604, complete sequence

A variant of the above peptide

STLQEQIGW

HIV-1 gag 241-249

nr:gi|9651244|gb|AAF91104.1|AF196657_1
MATCHES:9/9 POS:223-231
(AF196657) gag protein [Human immunodeficiency virus type 1]
nr:gi|7543963|emb|CAB87159.1|
MATCHES:9/9 POS:104-112
(AJ286512) p24 [Human immunodeficiency virus type 1]
nr:gi|7532694|emb|CAB87121.1|
MATCHES:9/9 POS:97-105
(AJ286539) p24 [Human immunodeficiency virus type 1]

Human pathogen

STNRQSGRQ

HBV pre-S protein 85-66

ChrHum:ref|NT_022818.3|Hs4_22974
MATCHES:8/9 POS:127629-127655(-)
Homo sapiens chromosome 4 working draft sequence segment
nr:gi|9885423|gb|AAG01444.1|
MATCHES:9/9 POS:85-93
(AF274499) pre-S1 protein [Hepatitis B virus]
nr:gi|9885421|gb|AAG01443.1|
MATCHES:9/9 POS:85-93
(AF274498) pre-S1 protein [Hepatitis B virus]
nr:gi|9885417|gb|AAG01441.1|
MATCHES:9/9 POS:85-93
(AF274496) pre-S1 protein [Hepatitis B virus]

Human pathogen

STYYGSFVTR

Initiation factor eIF3 p40 123-132

ProtHum:ref|NP_003747.1|
MATCHES:10/10 POS:122-131
eukaryotic translation initiation factor 3, subunit 3 (gamma, 40kD) [Homo sapiens]

Supports expression at the protein level
Only the terminal part of the protein that includes the peptide can be mapped to the human genome the begining of that protein which includes the peptide resides in a very low quality area (including gaps) of the human draft

SVLNLVIVK

40S ribosomal protein S6 107-115

ProtHum:ref|NP_001001.1|
MATCHES:9/9 POS:107-115
ribosomal protein S6 [Homo sapiens]

Supports expression at the protein level

SYLDSGIHF

beta catenin (mutated), proto-oncogene

ProtHum:ref|NP_001895.1|
MATCHES:8/9 POS:29-36
catenin (cadherin-associated protein), beta 1 (88kD) [Homo sapiens]

SYPTRIASL

Unknown

nr:gi|9838405|ref|NP_064018.1|
MATCHES:8/9 POS:31-39
orf409 [Beta vulgaris] ref|NP_064112.1| orf409 [Beta vulgaris] dbj|BAA99506.1| (AP000397) orf409 [Beta vulgaris]
nr:gi|7484654|pir||T14555
MATCHES:8/9 POS:31-39
DNA polymerase homolog dpo-r - beet mitochondrion emb|CAA84068.1| (Z34298) dpo-r [Beta vulgaris]
nr:gi|1762984|gb|AAB39606.1|
MATCHES:8/9 POS:194-202
(U67327) WD40-repeat type I transmembrane protein A72.5 [Mus musculus]

TAAQITQRKW

HLA-C 138-147

ProtHum:ref|NP_005505.1|
MATCHES:10/10 POS:162-171
major histocompatibility complex, class I, B [Homo sapiens]
ProtHum:ref|NP_002108.1|
MATCHES:9/10 POS:162-170
major histocompatibility complex, class I, C [Homo sapiens]

Supports expression at the protein level

TAMDVVYAL

Histone H4 82-90

ProtHum:ref|NP_068803.1|
MATCHES:9/9 POS:83-91
H4 histone family, member E [Homo sapiens]
ProtHum:ref|NP_003539.1|
MATCHES:9/9 POS:83-91
H4 histone, family 2 [Homo sapiens]
ProtHum:ref|NP_003537.1|
MATCHES:9/9 POS:83-91
H4 histone family, member K [Homo sapiens]

Supports expression at the protein level

TEFPKERHLRL

Unknown

N/A

TFDVAPSRL

Pm5 protein

ProtHum:ref|NP_055102.2|
MATCHES:9/9 POS:301-309
pM5 protein [Homo sapiens]

Supports expression at the protein level

TGYLNTVTV

GLBP 192-200

ProtHum:ref|NP_006089.1|
MATCHES:9/9 POS:192-200
guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1; protein homologous to chicken B complex protein, guanine nucleotide binding [Homo sapiens]

Supports expression at the protein level

THAVVIKKL

EIF-3 p110 subunit (translation

ProtHum:ref|NP_003743.1|
MATCHES:9/9 POS:325-333
eukaryotic translation initiation factor 3, subunit 8 (110kD) [Homo sapiens]

Supports expression at the protein level

THDELEDKL

Unknown

ESTHum:gb|BG822219.1|BG822219
MATCHES:8/9 POS:655-681(+)
602726377F1 NIH_MGC_15 Homo sapiens cDNA clone IMAGE:4865778 5'

THGPPVQL

Transducin-like enhancer protein 3

ProtHum:ref|NP_005069.1|
MATCHES:8/8 POS:137-144
transducin-like enhancer of split 3, homolog of Drosophila E(sp1); Transducin-like enhancer of split 3, homolog of Drosophila a E(spl); transducin-like enhancer of split 3, homolog of Drosophila E(spl) [Homo sapiens]
ProtHum:ref|NP_075384.1|
MATCHES:7/8 POS:157-163
hypothetical protein FLJ12949 [Homo sapiens]

Supports expression at the protein level

THNPQAPVL

Chp, R. norvegicus 131-139

ChrHum:ref|NT_010194.3|Hs15_10351
MATCHES:9/9 POS:6243719-6243745(-)
Homo sapiens chromosome 15 working draft sequence segment
nr:gi|3806122|gb|AAC69198.1|
MATCHES:9/9 POS:131-139
(AF097887) Chp [Rattus norvegicus]

Putative new gene which is homologous to the rat Chp protein
Supports Ensembl GenScan gene prediction

THTQPGVQL

Septin 2 70-78

ChrHum:ref|NT_011816.3|HsX_11973
MATCHES:9/9 POS:1214684-1214710(+)
Homo sapiens chromosome X working draft sequence segment
ChrHum:ref|NT_009307.3|Hs11_9464
MATCHES:8/9 POS:494501-494524(+)
Homo sapiens chromosome 11 working draft sequence segment
ChrHum:ref|NT_007189.3|Hs6_7346
MATCHES:8/9 POS:129016-129039(+)
Homo sapiens chromosome 6 working draft sequence segment
nr:gi|9910546|ref|NP_064326.1|
MATCHES:9/9 POS:73-81
septin 6 [Mus musculus] sp|Q9R1T4|SEP6_MOUSE SEPTIN 6 dbj|BAA82838.1| (AB023622) Septin6 [Mus musculus]
nr:gi|12849878|dbj|BAB28516.1|
MATCHES:9/9 POS:73-81
(AK012858) putative [Mus musculus]
nr:gi|2500770|sp|Q14141|SEP6_HUMAN
MATCHES:9/9 POS:70-78
SEPTIN 6 dbj|BAA09477.1| (D50918) The KIAA0128 gene is related to cdc10. [Homo sapiens]

Supports expression at the protein level

THYVAPRRL

Transcription activator SNF2L4 899-907

ProtHum:ref|NP_003063.1|
MATCHES:9/9 POS:899-907
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4; SNF2 (sucrose nonfermenting, yeast, homolog)-like 4; hSNF2b [Homo sapiens]
ProtHum:ref|NP_003061.1|
MATCHES:8/9 POS:869-877
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2; SWI/SNF related, matrix associated, actin dependent regulator of; SNF2 (sucrose nonfermenting, yeast, homolog)-like 2; Sth1p; hSNF2a [Homo sapiens]

Supports expression at the protein level

TIMPKDIQLARR

Histone 3.1/3.3 118-129

ProtHum:ref|NP_066298.1|
MATCHES:12/12 POS:119-130
H3 histone family, member I [Homo sapiens]
ProtHum:ref|NP_005315.1|
MATCHES:12/12 POS:119-130
H3 histone, family 3B (H3.3B) [Homo sapiens]
ProtHum:ref|NP_003528.1|
MATCHES:12/12 POS:119-130
H3 histone family, member L [Homo sapiens]

Supports expression at the protein level

TLIKIQHTL

Unknown

ChrHum:ref|NT_006547.3|Hs5_6704
MATCHES:8/9 POS:1334878-1334904(+)
Homo sapiens chromosome 5 working draft sequence segment
ChrHum:ref|NT_004511.3|Hs1_4668
MATCHES:8/9 POS:2153966-2153992(+)
Homo sapiens chromosome 1 working draft sequence segment
ChrHum:ref|NT_005638.3|Hs3_5795
MATCHES:8/9 POS:234542-234565(-)
Homo sapiens chromosome 3 working draft sequence segment
nt:gb|S78114.1|S78114
MATCHES:8/9 POS:2118-2144(-)
surfactant protein B [mice, DBA/2J, liver, Genomic/mRNA, 11664 nt]
nt:gb|AC004353.1|AC004353
MATCHES:8/9 POS:8192-8218(+)
Drosophila melanogaster DNA sequence (P1 DS03551 (D256)), complete sequence
nt:gb|AE003561.2|AE003561
MATCHES:8/9 POS:267449-267475(+)
Drosophila melanogaster genomic scaffold 142000013386050 section 7 of 54, complete sequence

TLWVDPYEV

B cell transloc. gene 1 protein 103-111

ProtHum:ref|NP_006754.1|
MATCHES:9/9 POS:101-109
BTG family, member 2; B-cell translocation gene 2 (pheochromacytoma cell-3); B-cell translocation gene 2 [Homo sapiens]
ProtHum:ref|NP_001722.1|
MATCHES:9/9 POS:103-111
B-cell translocation protein 1 [Homo sapiens]
ProtHum:ref|NP_006797.1|
MATCHES:8/9 POS:93-101
BTG family, member 3; abundant in neuroepithelium area; B-cell translocation gene [Homo sapiens]

Supports expression at the protein level

TPAGGGFPR

TISB protein 43-51

ProtHum:ref|NP_004917.1|
MATCHES:9/9 POS:43-51
butyrate response factor 1 (EGF-response factor 1) [Homo sapiens]

Supports expression at the protein level

TPYDINQML

HIV-2 gag p26 47-55

nr:gi|3204237|emb|CAA07917.1|
MATCHES:9/9 POS:81-89
(AJ008453) gag protein [Human immunodeficiency virus type 2]
nr:gi|94300|pir||S03070
MATCHES:9/9 POS:182-190
gag protein - human T-cell lymphotropic virus type 4 emb|CAA29692.1| (X06391) gag (AA 1-212) [Human T-cell lymphotropic virus type 4]
nr:gi|6649822|gb|AAF21585.1|
MATCHES:9/9 POS:88-96
(U93801) gag protein [Simian immunodeficiency virus]

Human pathogen

TRDELEWKL

Unknown

ProtHum:ref|NP_076970.1|
MATCHES:9/9 POS:190-198
hypothetical protein MGC3062 [Homo sapiens]

Supports expression of a protein that is documented as hypothetical

TRYPILAGH

Cytochrome P450 20-28

mRNAHum:gi|4503222|ref|NM_000106.1|
MATCHES:9/9 POS:1483-1509(-)
Homo sapiens cytochrome P450, subfamily IID (debrisoquine, sparteine, etc., -metabolizing), polypeptide 6 (CYP2D6), mRNA

Supports expression at the protein level

TSVPDHVVW

Leu-13 31-39

ProtHum:ref|NP_006426.1|
MATCHES:9/9 POS:51-59
interferon induced transmembrane protein 2 (1-8D); interferon-inducible [Homo sapiens]
ProtHum:ref|NP_066362.1|
MATCHES:9/9 POS:52-60
interferon induced transmembrane protein 3 (1-8U); interferon-inducible [Homo sapiens]
ProtHum:ref|NP_003632.1|
MATCHES:9/9 POS:31-39
interferon induced transmembrane protein 1 (9-27); interferon-induced protein 17 [Homo sapiens]

Supports expression at the protein level

TVFDAKRLIGR

HSP70B/HSC70 66-76

ProtHum:ref|NP_005336.2|
MATCHES:11/11 POS:66-76
heat shock 70kD protein 1A [Homo sapiens]
ProtHum:ref|NP_005337.1|
MATCHES:11/11 POS:66-76
heat shock 70kD protein 1B [Homo sapiens]
ProtHum:ref|NP_005518.1|
MATCHES:11/11 POS:68-78
heat shock 70kD protein-like 1; Heat-shock 70kD protein-like-1 [Homo sapiens]

Supports expression at the protein level

TYYGSFVTR

Initiation factor eIF3 p40 124-132

ProtHum:ref|NP_003747.1|
MATCHES:9/9 POS:123-131
eukaryotic translation initiation factor 3, subunit 3 (gamma, 40kD) [Homo sapiens]

Supports expression at the protein level
see peptide STYYGSFVTR|| Only the terminal part of the protein that includes the peptide can be mapped to the human genome the begining of that protein which includes the peptide resides in a very low quality area (including gaps)

VAPWNSLSL

Tissue inhibitor of metalloproteinase

ProtHum:ref|NP_003245.1|
MATCHES:9/9 POS:125-133
tissue inhibitor of metalloproteinase 1 precursor; Erythroid-potentiating activity (tissue inhibitor of metalloproteinases); erythroid potentiating activity [Homo sapiens]

Supports expression at the protein level

VAYEAPSL

Proteasome beta chain 144-151

ProtHum:ref|NP_002787.1|
MATCHES:8/8 POS:175-182
proteasome (prosome, macropain) subunit, beta type, 4; Proteasome subunit, beta type, 4 [Homo sapiens]

Supports expression at the protein level

VEDFQYLYY

Unknown

ChrHum:ref|NT_007465.3|Hs6_7622
MATCHES:8/9 POS:335379-335402(+)
Homo sapiens chromosome 6 working draft sequence segment
ChrHum:ref|NT_008502.3|Hs9_8659
MATCHES:8/9 POS:341954-341980(+)
Homo sapiens chromosome 9 working draft sequence segment
nt:emb|AL356959.9|AL356959
MATCHES:8/9 POS:30731-30754(-)
Human DNA sequence from clone RP3-383B8 on chromosome 6. Contains ESTs, STSs and GSSs, complete sequence [Homo sapiens]
nt:dbj|AP003361.2|AP003361
MATCHES:8/9 POS:81644-81670(-)
Staphylococcus aureus subsp. aureus Mu50 genomic DNA, complete sequence, section 4/9

VGYVDDTQF

HLA class I 25-33

ProtHum:ref|NP_002108.1|
MATCHES:9/9 POS:49-57
major histocompatibility complex, class I, C [Homo sapiens]
ProtHum:ref|NP_005507.1|
MATCHES:9/9 POS:46-54
major histocompatibility complex, class I, E [Homo sapiens]
ProtHum:ref|NP_005505.1|
MATCHES:9/9 POS:49-57
major histocompatibility complex, class I, B [Homo sapiens]

Supports expression at the protein level

VIPMFSAL

HIV-1 gag p24 168-175

ChrHum:ref|NT_026382.1|Hs10_26549
MATCHES:7/8 POS:55931-55954(+)
Homo sapiens chromosome 10 working draft sequence segment
ChrHum:ref|NT_005445.3|Hs2_5602
MATCHES:7/8 POS:2201042-2201065(-)
Homo sapiens chromosome 2 working draft sequence segment
ChrHum:ref|NT_025807.2|Hs9_25963
MATCHES:7/8 POS:1985567-1985590(-)
Homo sapiens chromosome 9 working draft sequence segment
nr:gi|8072305|gb|AAF71970.1|
MATCHES:8/8 POS:16-23
(AF260503) gag protein [Human immunodeficiency virus type 1]
nr:gi|8072293|gb|AAF71964.1|
MATCHES:8/8 POS:15-22
(AF260497) gag protein [Human immunodeficiency virus type 1]
nr:gi|8072285|gb|AAF71960.1|
MATCHES:8/8 POS:15-22
(AF260493) gag protein [Human immunodeficiency virus type 1]

Human pathogen

VLDLKIVAF

Unknown

nt:gb|AF037205.1|AF037205
MATCHES:8/9 POS:2020-2046(+)
Mus musculus RING zinc finger protein (Rzf) mRNA, complete cds

VLFRGGPRGSLAVA

SSR alpha signal sequence 12-25

ProtHum:ref|NP_003135.1|
MATCHES:14/14 POS:19-32
signal sequence receptor, alpha; TRAP alpha [Homo sapiens]

Supports expression at the protein level
Spans splice site
Putative SNP

VLKPGMVVTF

Elongation factor 1 alpha 271-280

ProtHum:ref|NP_001394.1|
MATCHES:10/10 POS:207-216
eukaryotic translation elongation factor 1 alpha 1-like 14 [Homo sapiens]
ProtHum:ref|NP_001393.1|
MATCHES:10/10 POS:271-280
eukaryotic translation elongation factor 1 alpha 1 [Homo sapiens]

Supports expression at the protein level

VLPKLYVKL

40S ribosomal protein S26 63-71

ProtHum:ref|NP_001020.1|
MATCHES:9/9 POS:63-71
ribosomal protein S26 [Homo sapiens]

Supports expression at the protein level

VPKLKVCAL

60S ribosomal protein L18 94-102

ProtHum:ref|NP_000970.1|
MATCHES:9/9 POS:95-103
ribosomal protein L18 [Homo sapiens]

Supports expression at the protein level

VPPPNFEM

MEF2C 136-143

ProtHum:ref|NP_002388.1|
MATCHES:8/8 POS:136-143
MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C) [Homo sapiens]

Supports expression at the protein level

VQGPVGTDF

Zinc finger transcription factor 296-304

ProtHum:ref|NP_003448.1|
MATCHES:9/9 POS:296-304
zinc finger protein 207 [Homo sapiens]

Supports expression at the protein level

VQIFGNKM

RBAP-2 432-439

ProtHum:ref|NP_075377.1|
MATCHES:8/8 POS:769-776
retinoblastoma-binding protein 1, isoform III [Homo sapiens]
ProtHum:ref|NP_002883.2|
MATCHES:8/8 POS:769-776
retinoblastoma-binding protein 1, isoform I [Homo sapiens]
ProtHum:ref|NP_075376.1|
MATCHES:8/8 POS:769-776
retinoblastoma-binding protein 1, isoform II [Homo sapiens]

Supports expression at the protein level

VRHDGGNVL

Unknown

ESTHum:gb|BE796632.1|BE796632
MATCHES:8/9 POS:761-784(+)
601592028F1 NIH_MGC_7 Homo sapiens cDNA clone IMAGE:3946039 5'

VRIGHLYIL

MAGE-A12 170-178

ProtHum:ref|NP_005358.1|
MATCHES:9/9 POS:170-178
melanoma antigen, family A, 12 [Homo sapiens]

Supports expression at the protein level

VSDIVGPDGLVY

Fibrillarin 177-188

ProtHum:ref|NP_001427.2|
MATCHES:12/12 POS:177-188
fibrillarin; 34-kD nucleolar scleroderma antigen [Homo sapiens]

Supports expression at the protein level
Spans splice site

VSFIEFVGW

EBV EBNA-4 279-287

nr:gi|9625617|ref|NP_039868.1|
MATCHES:9/9 POS:279-287
EBNA3B (EBNA4A) latent protein [Human herpesvirus 4] sp|P03203|EBN4_EBV EBNA-4 NUCLEAR PROTEIN (EBNA-3B) pir||QQBE24 nuclear antigen EBNA-3B - human herpesvirus 4 (strain B95-8) emb|CAA24858.1| (V01555) EBNA3B (EBNA4A) latent protein [Human herpesvirus 4]

Human pathogen

VSYGSIVTY

Complement receptor type 2 295-303

ProtHum:ref|NP_001868.1|
MATCHES:9/9 POS:295-303
complement component (3d/Epstein Barr virus) receptor 2 [Homo sapiens]

Supports expression at the protein level

VTDKSQEGSQF

HCG VII

ProtHum:ref|NP_004721.1|
MATCHES:11/11 POS:392-402
eukaryotic translation termination factor 1; polypeptide chain release factor 1; sup45 (yeast omnipotent suppressor 45) homolog-like 1 [Homo sapiens]

Supports expression at the protein level

VTNPHTDAW

GADD45 beta (growth arrest and

nr:gi|6166592|sp|O75293|G45B_HUMAN
MATCHES:9/9 POS:122-130
GROWTH ARREST AND DNA-DAMAGE-INDUCIBLE PROTEIN GADD45 BETA (NEGATIVE GROWTH-REGULATORY PROTEIN MYD118) (MYELOID DIFFERENTIATION PRIMARY RESPONSE PROTEIN MYD118) gb|AAC34572.1| (AC005624) MY18_HUMAN [Homo sapiens] gb|AAC83328.1| (AF078077) growth arrest and DNA-damage-inducible protein GADD45beta [Homo sapiens] gb|AAG48366.1|AF087853_1 (AF087853) growth arrest and DNA damage inducible protein beta [Homo sapiens]

Spans splice site might be an alternative spliced form of the gene:GADD45B

VTSPLTVEW

MHCII beta chain 209-217

ProtHum:ref|NP_072049.1|
MATCHES:9/9 POS:209-217
major histocompatibility complex, class II, DR beta 3 [Homo sapiens]
ProtHum:ref|NP_002116.1|
MATCHES:9/9 POS:209-217
major histocompatibility complex, class II, DR beta 5 [Homo sapiens]
ProtHum:ref|NP_002115.1|
MATCHES:9/9 POS:209-217
major histocompatibility complex, class II, DR beta 1 [Homo sapiens]

Supports expression at the protein level

VVAPITTGY

Calcyclin binding protein 63-71

ProtHum:ref|NP_055227.1|
MATCHES:9/9 POS:63-71
calcyclin binding protein [Homo sapiens]

Supports expression at the protein level

VVTGVANALAHRY

Hemoglobin gamma chain 132-144

nr:gi|122678|sp|P21380|HBB_RANTA
MATCHES:13/13 POS:132-144
HEMOGLOBIN BETA CHAIN
nr:gi|122545|sp|P02082|HBBF_CAPHI
MATCHES:13/13 POS:132-144
HEMOGLOBIN BETA FETAL CHAIN (HEMOGLOBIN GAMMA CHAIN) pir||HBGTF hemoglobin beta chain, fetal - goat gb|AAA30925.1| (M15388) gamma-globin [Capra hircus]
nr:gi|108442|pir||S13609
MATCHES:13/13 POS:132-144
hemoglobin beta chain - reindeer

2 Putative SNPs

VYIKHPVSL

Proteasome Su P31 131-139

ProtHum:ref|NP_002803.1|
MATCHES:9/9 POS:131-139
proteasome (prosome, macropain) 26S subunit, non-ATPase, 8 [Homo sapiens]

Supports expression at the protein level

WEFLQPILL

Unknown

ChrHum:ref|NT_009036.3|Hs11_9193
MATCHES:8/9 POS:105167-105193(+)
Homo sapiens chromosome 11 working draft sequence segment
nt:gb|AC024341.9|AC024341
MATCHES:8/9 POS:60128-60154(-)
Homo sapiens chromosome 11, clone RP11-336F14, complete sequence

WVKEKVVAL

NK-4 protein precursor 175-183

ProtHum:ref|NP_004212.2|
MATCHES:9/9 POS:175-183
natural killer cell transcript 4 [Homo sapiens]

Supports expression at the protein level

YAYDGKDYI

HLA-B5102 116-124

ProtHum:ref|NP_002118.1|
MATCHES:8/9 POS:140-148
HLA-G histocompatibility antigen, class I, G; HLA-G histocompatibility antigen, class I; major histocompatibility complex, class I, G [Homo sapiens]
ProtHum:ref|NP_005505.1|
MATCHES:8/9 POS:140-148
major histocompatibility complex, class I, B [Homo sapiens]
ProtHum:ref|NP_061823.1|
MATCHES:8/9 POS:137-145
major histocompatibility complex, class I, F [Homo sapiens]
ChrHum:ref|NT_007592.3|Hs6_7749
MATCHES:9/9 POS:3448761-3448787(+)
Homo sapiens chromosome 6 working draft sequence segment
ChrHum:ref|NT_007592.3|Hs6_7749
MATCHES:9/9 POS:4755026-4755052(+)
Homo sapiens chromosome 6 working draft sequence segment
ChrHum:ref|NT_007592.3|Hs6_7749
MATCHES:8/9 POS:5944525-5944551(-)
Homo sapiens chromosome 6 working draft sequence segment
nr:gi|14518211|gb|AAK64458.1|
MATCHES:9/9 POS:115-123
(AF384044) MHC class I antigen [Homo sapiens]
nr:gi|14029717|gb|AAK52802.1|
MATCHES:9/9 POS:115-123
(AF363680) MHC class I antigen [Homo sapiens]
nr:gi|12957118|emb|CAC29240.1|
MATCHES:9/9 POS:115-123
(AJ309573) MHC class I antigen [Homo sapiens]

Supports expression at the protein level

YAYDGKDYIAL

HLA-Cw0304 140-150

ProtHum:ref|NP_002118.1|
MATCHES:10/11 POS:140-150
HLA-G histocompatibility antigen, class I, G; HLA-G histocompatibility antigen, class I; major histocompatibility complex, class I, G [Homo sapiens]
ProtHum:ref|NP_005505.1|
MATCHES:10/11 POS:140-150
major histocompatibility complex, class I, B [Homo sapiens]
ProtHum:ref|NP_002107.1|
MATCHES:10/11 POS:141-150
major histocompatibility complex, class I, A [Homo sapiens]
ChrHum:ref|NT_007592.3|Hs6_7749
MATCHES:11/11 POS:3448761-3448793(+)
Homo sapiens chromosome 6 working draft sequence segment
ChrHum:ref|NT_007592.3|Hs6_7749
MATCHES:11/11 POS:4755026-4755058(+)
Homo sapiens chromosome 6 working draft sequence segment
ChrHum:ref|NT_007592.3|Hs6_7749
MATCHES:10/11 POS:5944519-5944551(-)
Homo sapiens chromosome 6 working draft sequence segment
nr:gi|8117810|gb|AAF72781.1|AF168400_1
MATCHES:11/11 POS:140-150
(AF168400) MHC class I antigen [Pan troglodytes]
nr:gi|7018308|emb|CAB75703.1|
MATCHES:11/11 POS:140-150
(AJ271340) human leucocyte antigen A [Homo sapiens]
nr:gi|6006500|emb|CAB56838.1|
MATCHES:11/11 POS:140-150
(AJ249241) human leucocyte antigen A [Homo sapiens]

Supports expression at the protein level

YEIHDGMNL

EST

ProtHum:ref|NP_077268.1|
MATCHES:9/9 POS:60-68
ubiquitin-like 5 [Homo sapiens]

Supports expression at the protein level
Spans splice site

YFDDTLEDF

Unknown

ESTHum:gb|AI373045.1|AI373045
MATCHES:8/9 POS:340-366(-)
qz55e10.x1 NCI_CGAP_Kid11 Homo sapiens cDNA clone IMAGE:2030826 3' similar to TR:O26186 O26186 O-LINKED GLCNAC TRANSFERASE. ;
ESTHum:gb|AA860983.1|AA860983
MATCHES:8/9 POS:346-372(-)
aj90d08.s1 Soares_parathyroid_tumor_NbHPA Homo sapiens cDNA clone IMAGE:1403727 3'
ESTHum:gb|BE501080.1|BE501080
MATCHES:8/9 POS:340-366(-)
7a36g02.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone IMAGE:3220850 3' similar to TR:O13499 O13499 TOM70 GENE. ;

YFDPANGKF

Elongation factor 2 265-273

ProtHum:ref|NP_001952.1|
MATCHES:9/9 POS:265-273
eukaryotic translation elongation factor 2 [Homo sapiens]

Supports expression at the protein level

YFDPANGKFSK

Elongation factor 2 265-275

ProtHum:ref|NP_001952.1|
MATCHES:11/11 POS:265-275
eukaryotic translation elongation factor 2 [Homo sapiens]

Supports expression at the protein level

YHAKDPNNL

26S proteasome regulatory SU S2 751-759

ProtHum:ref|NP_002799.1|
MATCHES:9/9 POS:695-703
proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 [Homo sapiens]

Supports expression at the protein level

YHEDIHTYL

Cyclin A 178-186

ProtHum:ref|NP_001228.1|
MATCHES:9/9 POS:178-186
cyclin A [Homo sapiens]

Supports expression at the protein level

YHGHGVSAF

EST (human)

mRNAHum:gi|13129025|ref|NM_024056.1|
MATCHES:9/9 POS:42-68(+)
Homo sapiens hypothetical protein MGC5576 (MGC5576), mRNA

Supports expression of a protein that is documented as hypothetical
alternative translation of the mRNA

YHSEVPVSL

Spectrin beta chain 2249-2257

ProtHum:ref|NP_003119.1|
MATCHES:9/9 POS:2249-2257
spectrin, beta, non-erythrocytic 1; Spectrin, beta, nonerythrocytic-1 (beta-fodrin) [Homo sapiens]
ProtHum:ref|NP_008877.1|
MATCHES:8/9 POS:2270-2278
spectrin, beta, non-erythrocytic 2 [Homo sapiens]

Supports expression at the protein level

YHTDTTVKF

Topoisomerase II 960.968

ProtHum:ref|NP_001058.1|
MATCHES:9/9 POS:960-968
topoisomerase (DNA) II alpha (170kD) [Homo sapiens]
ProtHum:ref|NP_001059.1|
MATCHES:9/9 POS:976-984
topoisomerase (DNA) II beta (180kD) [Homo sapiens]

Supports expression at the protein level

YLDDPDLKY

DNA methyl transferase 238-246

ProtHum:ref|NP_001370.1|
MATCHES:9/9 POS:359-367
DNA (cytosine-5-)-methyltransferase 1; DNA methyltransferase 1; DNA methyltransferase [Homo sapiens]

Supports expression at the protein level

YLGEFSITY

40S ribosomal protein S15 114-122

ProtHum:ref|NP_001009.1|
MATCHES:9/9 POS:115-123
ribosomal protein S15 [Homo sapiens]

Supports expression at the protein level

YLKVKGNVF

60S ribosomal protein L19 124-132

ProtHum:ref|NP_000972.1|
MATCHES:9/9 POS:124-132
ribosomal protein L19 [Homo sapiens]

Supports expression at the protein level

YLLPAIVHI

RNA helicase p72 146-154

ProtHum:ref|NP_004387.1|
MATCHES:9/9 POS:148-156
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5; DEAD/H box-5; RNA helicase p68; p68 nuclear antigen; RNA-dependent ATPase [Homo sapiens]
ProtHum:ref|NP_006377.1|
MATCHES:9/9 POS:146-154
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 17 (72kD) [Homo sapiens]

Supports expression at the protein level

YLYGQTTTY

DNA topoisomerase II 683-692

ProtHum:ref|NP_001058.1|
MATCHES:9/9 POS:684-692
topoisomerase (DNA) II alpha (170kD) [Homo sapiens]

Supports expression at the protein level

YMIDPSGVSY

Proteasome Su HC8 149-158

ProtHum:ref|NP_002779.1|
MATCHES:10/10 POS:150-159
proteasome (prosome, macropain) subunit, alpha type, 3 [Homo sapiens]

Supports expression at the protein level

YMNGTMSQV

Tyrosinase 351-359

ProtHum:ref|NP_000363.1|
MATCHES:9/9 POS:369-377
tyrosinase (oculocutaneous albinism IA); Tyrosinase [Homo sapiens]

Supports expression at the protein level

YPFKPPKV

Ubiquitin conjugating enzyme E2 60-27

ProtHum:ref|NP_006348.1|
MATCHES:8/8 POS:120-127
ubiquitin-conjugating enzyme E2E 3 (homologous to yeast UBC4/5) [Homo sapiens]
ProtHum:ref|NP_003331.1|
MATCHES:8/8 POS:60-67
ubiquitin-conjugating enzyme E2D 3 (homologous to yeast UBC4/5); UbcH5C [Homo sapiens]
ProtHum:ref|NP_003330.1|
MATCHES:8/8 POS:60-67
ubiquitin-conjugating enzyme E2D 2 (homologous to yeast UBC4/5); UbcH5B [Homo sapiens]

Supports expression at the protein level

YQEKGVRVL

ARP2 402-410

ProtHum:ref|NP_005713.1|
MATCHES:9/9 POS:378-386
ARP2 (actin-related protein 2, yeast) homolog [Homo sapiens]

Supports expression at the protein level

YQFTGIKKY

Unknown

ChrHum:ref|NT_025273.3|HsX_25429
MATCHES:9/9 POS:103571-103597(+)
Homo sapiens chromosome X working draft sequence segment
ChrHum:ref|NT_025273.3|HsX_25429
MATCHES:9/9 POS:187928-187954(+)
Homo sapiens chromosome X working draft sequence segment
ChrHum:ref|NT_008804.3|Hs10_8961
MATCHES:9/9 POS:1715609-1715635(-)
Homo sapiens chromosome 10 working draft sequence segment
nr:gi|14249376|ref|NP_116136.1|
MATCHES:9/9 POS:10-18
hypothetical protein MGC14697 [Homo sapiens] gb|AAH07087.1|AAH07087 (BC007087) Similar to upregulated during skeletal muscle growth 5 [Homo sapiens]
nr:gi|13128954|ref|NP_075700.1|
MATCHES:8/9 POS:10-18
upregulated during skeletal muscle growth 5 [Mus musculus] emb|CAC03620.1| (AJ290947) stretch regulated skeletal muscle protein [Mus musculus]
nr:gi|12842476|dbj|BAB25617.1|
MATCHES:8/9 POS:10-18
(AK008345) putative [Mus musculus] dbj|BAB25710.1| (AK008511) putative [Mus musculus]

Supports expression of a protein that is documented as hypothetical

YRGNVGVVL

dUTP pyrophosphatase 193-201

ProtHum:ref|NP_001939.1|
MATCHES:9/9 POS:105-113
dUTP pyrophosphatase [Homo sapiens]

Supports expression at the protein level

YRPGTVAL

Histone 3.1/3.3 18-25

ProtHum:ref|NP_066298.1|
MATCHES:8/8 POS:42-49
H3 histone family, member I [Homo sapiens]
ProtHum:ref|NP_005315.1|
MATCHES:8/8 POS:42-49
H3 histone, family 3B (H3.3B) [Homo sapiens]
ProtHum:ref|NP_003528.1|
MATCHES:8/8 POS:42-49
H3 histone family, member L [Homo sapiens]

Supports expression at the protein level

YRPRPRRY

GAGE-1 and GAGE-2 9-16

ProtHum:ref|NP_036328.1|
MATCHES:8/8 POS:9-16
G antigen 8 [Homo sapiens]
ProtHum:ref|NP_001463.1|
MATCHES:8/8 POS:9-16
G antigen 2 [Homo sapiens]
ProtHum:ref|NP_001459.1|
MATCHES:8/8 POS:9-16
G antigen 1 [Homo sapiens]

2 Putative SNPs

YTAVVPLVY

Immunoglobulin J chain 102-110

ChrHum:ref|NT_006281.3|Hs4_6438
MATCHES:9/9 POS:204510-204536(-)
Homo sapiens chromosome 4 working draft sequence segment
ChrHum:ref|NT_023145.3|Hs5_23301
MATCHES:8/9 POS:53177-53203(-)
Homo sapiens chromosome 5 working draft sequence segment
ChrHum:ref|NT_022456.3|Hs3_22612
MATCHES:8/9 POS:563393-563419(-)
Homo sapiens chromosome 3 working draft sequence segment
nr:gi|400044|sp|P01591|IGJ_HUMAN
MATCHES:9/9 POS:110-118
IMMUNOGLOBULIN J CHAIN gb|AAA58902.1| (M12759) Ig J-chain [Homo sapiens]
nr:gi|69716|pir||JIHU
MATCHES:9/9 POS:102-110
Ig J chain - human (tentative sequence)

Supports expression at the protein level

YTDYGGLIFNSY

Cytochrome C oxidase II 110-121

ChrHum:ref|NT_023716.3|Hs8_23872
MATCHES:12/12 POS:16387-16422(+)
Homo sapiens chromosome 8 working draft sequence segment
ChrHum:ref|NT_005322.3|Hs2_5479
MATCHES:12/12 POS:613226-613261(+)
Homo sapiens chromosome 2 working draft sequence segment
ChrHum:ref|NT_006721.3|Hs5_6878
MATCHES:12/12 POS:106492-106527(-)
Homo sapiens chromosome 5 working draft sequence segment
nr:gi|14010697|ref|NP_114337.1|
MATCHES:12/12 POS:110-121
cytochrome c oxidase subunit II [Macaca sylvanus] emb|CAC37980.1| (AJ309865) cytochrome oxidase II [Macaca sylvanus]
nr:gi|13273246|gb|AAK17847.1|
MATCHES:12/12 POS:110-121
(AF347012) cytochrome c oxidase subunit II [Homo sapiens] gb|AAK17860.1| (AF347013) cytochrome c oxidase subunit II [Homo sapiens]
nr:gi|13273190|gb|AAK17795.1|
MATCHES:12/12 POS:110-121
(AF347008) cytochrome c oxidase subunit II [Homo sapiens]

Supports expression at the protein level

YTIPPGHQV

Cytochrome P450 LI 399-407

ProtHum:ref|NP_000777.1|
MATCHES:9/9 POS:399-407
cytochrome P450, 51 (lanosterol 14-alpha-demethylase) [Homo sapiens]

Supports expression at the protein level

YTNPQFNVY

Unknown

N/A

YTPTISRER

Proteasome Su C7-I 147-155

ProtHum:ref|NP_002785.1|
MATCHES:9/9 POS:147-155
proteasome (prosome, macropain) subunit, beta type, 2; Proteasome subunit, beta type, 2 [Homo sapiens]

Supports expression at the protein level
Spans splice site

YTSDYFISY

Ets-1 154-162

ProtHum:ref|NP_005229.1|
MATCHES:9/9 POS:154-162
v-ets avian erythroblastosis virus E26 oncogene homolog 1; Avian erythroblastosis virus E26 (v-ets) oncogene homolog-1; v-ets avian erythroblastosis virus E2 oncogene homolog 1 [Homo sapiens]

Supports expression at the protein level
Spans splice site

YVIPHVHAF

Unknown

N/A

YVISVVFRL

Connexin 32 135-143

ProtHum:ref|NP_000157.1|
MATCHES:9/9 POS:135-143
gap junction protein, beta 1, 32kD (connexin 32, Charcot-Marie-Tooth neuropathy, X-linked); Gap junction protein, beta-1, 32kD (connexin 32) [Homo sapiens]

Supports expression at the protein level

YVNVNMGLK

HBV cAg 88-96

ChrHum:ref|NT_009984.3|Hs13_10141
MATCHES:8/9 POS:385915-385941(+)
Homo sapiens chromosome 13 working draft sequence segment
ChrHum:ref|NT_022860.2|Hs4_23016
MATCHES:8/9 POS:36105-36128(+)
Homo sapiens chromosome 4 working draft sequence segment
ChrHum:ref|NT_023860.3|Hs8_24016
MATCHES:8/9 POS:47808-47831(-)
Homo sapiens chromosome 8 working draft sequence segment
nr:gi|14290240|gb|AAK59315.1|AF384371_1
MATCHES:9/9 POS:88-96
(AF384371) precore/core protein [Hepatitis B virus] gb|AAK62975.1|AF384372_1 (AF384372) core protein [Hepatitis B virus]
nr:gi|12247006|gb|AAG49700.1|
MATCHES:9/9 POS:88-96
(AF223960) core protein [Hepatitis B virus]
nr:gi|12060440|dbj|BAB20610.1|
MATCHES:9/9 POS:88-96
(AB049610) core protein [Hepatitis B virus]

Human pathogen

YYEEQHPEL

NK/T-cell activation protein 76-84

ProtHum:ref|NP_004212.2|
MATCHES:9/9 POS:107-115
natural killer cell transcript 4 [Homo sapiens]

Supports expression at the protein level
Spans splice site